HHsearch alignment for GI: 254780709 and conserved domain: PRK13889
>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=95.78 E-value=0.14 Score=31.34 Aligned_cols=107 Identities=23% Similarity=0.225 Sum_probs=68.3
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 67412311354444424789999999852267426774345124568899999753035321223586612454228999
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~ 188 (321)
T Consensus 360 ~~~~iavVvG~AGtGKStmL~aAReawEa~GyrV~GaALs---GkAAegLe~---~sGI~SrT------lA-----s~e~ 422 (992)
T PRK13889 360 DGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALS---GIAAENLEG---GSGIASRT------IA-----SLEH 422 (992)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC---HHHHHHHHH---CCCCCCHH------HH-----HHHH
T ss_conf 7897589983388878899999999999779889811500---689997653---47943167------99-----9999
Q ss_pred HH------HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 96------514875998654333211577899998998763022234301123102335
Q gi|254780709|r 189 AQ------AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 (321)
Q Consensus 189 a~------~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~ 241 (321)
T Consensus 423 ~w~~g~~~L~~~dVlVVDEAGM--VgSRqMarll~~Ae~A-------GAKVVLVGD~~Q 472 (992)
T PRK13889 423 GWGQGRDLLTARDVLVIDEAGM--VGTRQLERVLSHAADA-------GAKVVLVGDPQQ 472 (992)
T ss_pred HHHCCCCCCCCCCEEEEECCCC--CCHHHHHHHHHHHHHC-------CCEEEEECCHHH
T ss_conf 8746733478985899967655--7749999999999984-------998999488777