HHsearch alignment for GI: 254780709 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.30 E-value=0.0046 Score=41.81 Aligned_cols=123 Identities=21% Similarity=0.240 Sum_probs=69.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHH-HHHH---HCCCC-E-EEEECCCCCHHHH--HHHHHHHHHHCCC---CCCCCCCCCCH
Q ss_conf 4123113544444247899999-9985---22674-2-6774345124568--8999997530353---21223586612
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLS-KKMS---DAGLK-V-MLAAGDTFRSAAI--DQLKIWADRTSAD---FVCSEIGSDAA 179 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA-~~~~---~~g~k-V-~lva~DtfR~aA~--eQL~~~a~~~~v~---~~~~~~~~dp~ 179 (321)
T Consensus 242 ~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~ 321 (753)
T TIGR01447 242 SNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDLIAALPS 321 (753)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCH
T ss_conf 87689987988977899999999999989864997404788668447999999999988632234236658798548720
Q ss_pred HHHHHHHHHHH--------------H--HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC---CCCCEEEEECCCC
Q ss_conf 45422899996--------------5--148759986543332115778999989987630222---3430112310233
Q gi|254780709|r 180 ALAYEAFKQAQ--------------A--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP---HAPHSVLQVLDAT 240 (321)
Q Consensus 180 ~v~~~a~~~a~--------------~--~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~---~~p~~~~lVlda~ 240 (321)
T Consensus 322 ~~--~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaS--MVdl~lm~kL~---~A~~~~~k~~KLy~~~LIllGD~n 394 (753)
T TIGR01447 322 EA--TTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLL---KALPPNTKDKKLYADRLILLGDKN 394 (753)
T ss_pred HH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCH--HCCHHHHHHHH---HHCCCCCCCCCHHHCCCCEECCCC
T ss_conf 45--688886166147876776777788985527870600--22679999999---722630013201010200122678