>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.

Probab=97.76 E-value=0.0025 Score=43.63 Aligned_cols=205 Identities=19% Similarity=0.297 Sum_probs=131.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------HHCCCCCHHH Q ss_conf 99999999999999999998605677899--9--99999999997388989999999999987-------5127899899 Q gi|254780709|r 15 RKLTKGFASTSLKLKEGITDIISSRRLDD--G--VREELEDLLIRSDIGVAVAQKIVEELLTK-------RYAKDVSVQR 83 (321) Q Consensus 15 ~kLk~gL~kt~~~L~~~l~~l~~~~~lde--~--~leeLee~LL~ADVg~~va~~Iie~ik~~-------~~~~~i~~~~ 83 (321) T Consensus 3 ~~Ld~~m~~Dr~~lRRrL~~l~k~~~~d~~~aPh~L~~~~~~----------~~~a~~~V~~R~~~~P~i~YPd~LPvS~ 72 (1320) T TIGR01967 3 EDLDHVMLRDRHRLRRRLHKLRKEKDQDRKEAPHALAKLREK----------IDAACDKVEAREQAVPEIRYPDNLPVSA 72 (1320) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCCCEEECCCCCCHHH T ss_conf 468889887577888888874388776564555999999999----------9999999999997098430878887111 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH Q ss_conf 99999998785201001210001366741231135444442478999999985226742677434512456889999975 Q gi|254780709|r 84 VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 (321) Q Consensus 84 i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~ 163 (321) T Consensus 73 kRedI~~AI~~--------------n--QVviiAGETGSGKTTQLPKICLELGr-G~~GlIGHTQPRRlAAR~VA~R~Ae 135 (1320) T TIGR01967 73 KREDIAKAIAE--------------N--QVVIIAGETGSGKTTQLPKICLELGR-GSRGLIGHTQPRRLAARSVAERVAE 135 (1320) T ss_pred HHHHHHHHHHH--------------C--CEEEEECCCCCCCCCCCHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 18999999984--------------8--98999724487620232167775427-8765412471468899999999999 Q ss_pred HHCCCC---------CCCCC-CCCCHHHHHHHHHHHH------HHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 303532---------12235-8661245422899996------5148759986543-33211577899998998763022 Q gi|254780709|r 164 RTSADF---------VCSEI-GSDAAALAYEAFKQAQ------AKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLD 226 (321) Q Consensus 164 ~~~v~~---------~~~~~-~~dp~~v~~~a~~~a~------~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~ 226 (321) T Consensus 136 ELgtplGe~VGYkVRF~D~v~~~t~VKLmTDGiLLAE~Q~DRfL~~YDTIIIDEAHERSLNIDFLLGYLK~l-------L 208 (1320) T TIGR01967 136 ELGTPLGELVGYKVRFEDQVSSNTLVKLMTDGILLAETQQDRFLERYDTIIIDEAHERSLNIDFLLGYLKQL-------L 208 (1320) T ss_pred HHCCCCCCCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHH-------C T ss_conf 838898861320366314268854363032235899852002221067336511231123388999888763-------2 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 23430112310233522577899987643 Q gi|254780709|r 227 PHAPHSVLQVLDATTGQNALRQVEMFHAV 255 (321) Q Consensus 227 ~~~p~~~~lVlda~~gq~~~~~a~~F~~~ 255 (321) T Consensus 209 ~rRPDLKiIITSATI--D~ERFs~HFn~A 235 (1320) T TIGR01967 209 PRRPDLKIIITSATI--DPERFSRHFNNA 235 (1320) T ss_pred CCCCCCCEEEECCCC--CHHHHHHHHCCC T ss_conf 668865257400235--744687862278

HHsearch alignment for GI: 254780709 and conserved domain: TIGR01967