HHsearch alignment for GI: 254780709 and conserved domain: TIGR02173
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.08 E-value=0.00091 Score=46.74 Aligned_cols=72 Identities=22% Similarity=0.304 Sum_probs=46.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCCH---HHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235-86612---454228999
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAA---ALAYEAFKQ 188 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~-~~dp~---~v~~~a~~~ 188 (321)
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Lsl~~-----iSaG--------~iRelA~~~Gldl~E~~~aee~~eIDk~iD~~~~E~ 68 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKL-----ISAG--------DIRELAEKMGLDLAESKYAEENPEIDKKIDRRIREI 68 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCE-----ECCC--------HHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 788735896864789999998639831-----2020--------078898642988777344305863116753788554
Q ss_pred HHHHCCCEEE
Q ss_conf 9651487599
Q gi|254780709|r 189 AQAKKVDVLI 198 (321)
Q Consensus 189 a~~~~~Dvvl 198 (321)
T Consensus 69 A~~~-~nvvl 77 (173)
T TIGR02173 69 AEKE-KNVVL 77 (173)
T ss_pred HCCC-CCEEE
T ss_conf 3048-96688