HHsearch alignment for GI: 254780709 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=97.77 E-value=0.00014 Score=52.51 Aligned_cols=96 Identities=23% Similarity=0.307 Sum_probs=57.9
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 67412311354444424789999999852267426774345124568899999753035321223586612454228999
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~ 188 (321)
T Consensus 34 ri~HAYLF~GpRGtGKTS~A------------------------------RIfAKaLNC~-~~~~~PCn~C~~C-~~i~- 80 (363)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIA------------------------------RIFAKALNCQ-GPDGEPCNECESC-KEIN- 80 (363)
T ss_pred CCCCEEEECCCCCCCHHHHH------------------------------HHHHHHHCCC-CCCCCCCCCCCHH-HHHH-
T ss_conf 96623450285997635589------------------------------9999986588-7877877775022-7765-
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHH-------------------------HHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 965148759986543332115778999989-------------------------98763022234301123102335
Q gi|254780709|r 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKM-------------------------IRVLKRLDPHAPHSVLQVLDATT 241 (321)
Q Consensus 189 a~~~~~DvvliDTAGR~~~~~~lm~EL~ki-------------------------~~v~~~~~~~~p~~~~lVlda~~ 241 (321)
T Consensus 81 -~g~~~DviEiDAASN--~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FIl-ATT 154 (363)
T TIGR02397 81 -SGSSLDVIEIDAASN--NGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL-ATT 154 (363)
T ss_pred -CCCCCCEEEECCCCC--CCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE-ECC
T ss_conf -289866688648656--87889999987303687554433588732302865689998765227987628887-348