HHsearch alignment for GI: 254780709 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.48 E-value=0.0047 Score=41.74 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCC-CCCCCHHHHHH
Q ss_conf 6674-1231135444442478999999985226742677434512456889999975303532-1223-58661245422
Q gi|254780709|r 108 SHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSE-IGSDAAALAYE 184 (321)
Q Consensus 108 ~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~-~~~dp~~v~~~ 184 (321)
T Consensus 592 ~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~--liR~DM---SEy~E~hsvsrLiGaPPGYVGy~eGG----~LTe 662 (852)
T TIGR03345 592 PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQN--LITINM---SEFQEAHTVSRLKGSPPGYVGYGEGG----VLTE 662 (852)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC--EEEECC---HHHCCHHHHHHHCCCCCCCCCCCCCC----HHHH
T ss_conf 99985689987899877899999999997198611--478422---43210436878638999766748777----2109
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCHHHH
Q ss_conf 8999965148759986543332115-77899998998763022-23430112310233522577
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTAGRLHNNS-ILMAGIGKMIRVLKRLD-PHAPHSVLQVLDATTGQNAL 246 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTAGR~~~~~-~lm~EL~ki~~v~~~~~-~~~p~~~~lVlda~~gq~~~ 246 (321)
T Consensus 663 ~V---rr~PysVvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtIIImTSN~Gs~~i 723 (852)
T TIGR03345 663 AV---RRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLI 723 (852)
T ss_pred HH---HHCCCEEEEECHHHHCCHHHHHHHHHHHCCCEEECCCCCEEECEEEEEEECCCHHHHHH
T ss_conf 88---80998688861130028899999998724677757999988452129997572447999