HHsearch alignment for GI: 254780709 and conserved domain: TIGR03348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.93 E-value=3.8e-05 Score=56.45 Aligned_cols=133 Identities=25% Similarity=0.292 Sum_probs=69.9
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
T Consensus 113 WYlviG~~gsGKTt~l-------~~Sgl~fPl~----------~~~~~~~~-~g---~ggt~~cd----wwf------t~ 161 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLL-------QNSGLKFPLA----------ERLGAAAL-RG---VGGTRNCD----WWF------TD 161 (1169)
T ss_pred EEEEECCCCCCHHHHH-------HHCCCCCCCC----------CCCCHHHC-CC---CCCCCCCC----EEE------EC
T ss_conf 5899789998668999-------8379988774----------10011221-58---89985557----165------27
Q ss_pred CCCEEEEECCCCCCCHHHH----HHHHHHHHHHHHCCCCCCCC-EEEEECCC--CCCHHH--H-HH-------HHHHHHH
Q ss_conf 4875998654333211577----89999899876302223430-11231023--352257--7-89-------9987643
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPH-SVLQVLDA--TTGQNA--L-RQ-------VEMFHAV 255 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~l----m~EL~ki~~v~~~~~~~~p~-~~~lVlda--~~gq~~--~-~~-------a~~F~~~ 255 (321)
T Consensus 162 --~AVliDtaGry~~Q~~~~~~d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~ 239 (1169)
T TIGR03348 162 --EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ 239 (1169)
T ss_pred --CEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf --879994797602688864001899999999998648989987689997899974789999999999999999999998
Q ss_pred CCCC---EEEEECCCCCCCHHHHHHH
Q ss_conf 5897---6999654578706999999
Q gi|254780709|r 256 AGTT---GLIMTKMDGTARGGGLIPI 278 (321)
Q Consensus 256 ~~~~---g~I~TKlD~ta~~G~~ls~ 278 (321)
T Consensus 240 lg~~~PVYv~~TK~Dll~GF~eff~~ 265 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLLAGFEEFFAD 265 (1169)
T ss_pred HCCCCCEEEEEECHHHHHCHHHHHHH
T ss_conf 29987759986640123069999985