HHsearch alignment for GI: 254780709 and conserved domain: TIGR03598

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.86  E-value=0.053  Score=34.37  Aligned_cols=149  Identities=18%  Similarity=0.214  Sum_probs=71.9

Q ss_pred             CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             01366741231135444442478999999985226742677434512456889999975303532122358661245422
Q gi|254780709|r  105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE  184 (321)
Q Consensus       105 ~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~  184 (321)
T Consensus        13 ~p~~~~p-~IaivGrpNvGKSTL~N~L~----g~-k~~a~v-s~~--pGtT--------r-~i~~~~-------------   61 (179)
T TIGR03598        13 LPPDDGP-EIAFAGRSNVGKSSLINALT----NR-KKLART-SKT--PGRT--------Q-LINFFE-------------   61 (179)
T ss_pred             CCCCCCC-EEEEECCCCCCHHHHHHHHH----CC-CCEEEE-CCC--CCEE--------E-ECCEEE-------------
T ss_conf             9998897-89998699988899999986----89-855897-089--9736--------6-023201-------------


Q ss_pred             HHHHHHHHCCCEEEEECCCC-----CCCHHHHHHH-HHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHC
Q ss_conf             89999651487599865433-----3211577899-998998763022234301123102335225--778999876435
Q gi|254780709|r  185 AFKQAQAKKVDVLIIDTAGR-----LHNNSILMAG-IGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVA  256 (321)
Q Consensus       185 a~~~a~~~~~DvvliDTAGR-----~~~~~~lm~E-L~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~  256 (321)
T Consensus        62 -------~~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~villiDa~~gl~~~D~~i~~~l~~~~  129 (179)
T TIGR03598        62 -------VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRGRE-----NLKGVVLLMDIRHPLKELDLEMLEWLDERG  129 (179)
T ss_pred             -------ECCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHH-----HHHCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             -------04736999777602112788889999999999999988-----643028987437799899999999999759


Q ss_pred             CCCEEEEECCCCCCCHHH---HHHHHHHH-----CCCEEEEEC--CCCCC
Q ss_conf             897699965457870699---99999997-----698899975--89813
Q gi|254780709|r  257 GTTGLIMTKMDGTARGGG---LIPIVVTH-----KIPVYFLGV--GEGIN  296 (321)
Q Consensus       257 ~~~g~I~TKlD~ta~~G~---~ls~~~~~-----~~Pi~fig~--Ge~i~  296 (321)
T Consensus       130 kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ISA~~g~GID  179 (179)
T TIGR03598       130 IPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQLFSSLKKTGIE  179 (179)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf             98899997813069899999999999997336688948999799983879