HHsearch alignment for GI: 254780709 and conserved domain: TIGR03598
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.86 E-value=0.053 Score=34.37 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=71.9
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 01366741231135444442478999999985226742677434512456889999975303532122358661245422
Q gi|254780709|r 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 (321)
Q Consensus 105 ~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~ 184 (321)
T Consensus 13 ~p~~~~p-~IaivGrpNvGKSTL~N~L~----g~-k~~a~v-s~~--pGtT--------r-~i~~~~------------- 61 (179)
T TIGR03598 13 LPPDDGP-EIAFAGRSNVGKSSLINALT----NR-KKLART-SKT--PGRT--------Q-LINFFE------------- 61 (179)
T ss_pred CCCCCCC-EEEEECCCCCCHHHHHHHHH----CC-CCEEEE-CCC--CCEE--------E-ECCEEE-------------
T ss_conf 9998897-89998699988899999986----89-855897-089--9736--------6-023201-------------
Q ss_pred HHHHHHHHCCCEEEEECCCC-----CCCHHHHHHH-HHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHC
Q ss_conf 89999651487599865433-----3211577899-998998763022234301123102335225--778999876435
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTAGR-----LHNNSILMAG-IGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVA 256 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTAGR-----~~~~~~lm~E-L~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~ 256 (321)
T Consensus 62 -------~~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~villiDa~~gl~~~D~~i~~~l~~~~ 129 (179)
T TIGR03598 62 -------VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRGRE-----NLKGVVLLMDIRHPLKELDLEMLEWLDERG 129 (179)
T ss_pred -------ECCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHH-----HHHCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf -------04736999777602112788889999999999999988-----643028987437799899999999999759
Q ss_pred CCCEEEEECCCCCCCHHH---HHHHHHHH-----CCCEEEEEC--CCCCC
Q ss_conf 897699965457870699---99999997-----698899975--89813
Q gi|254780709|r 257 GTTGLIMTKMDGTARGGG---LIPIVVTH-----KIPVYFLGV--GEGIN 296 (321)
Q Consensus 257 ~~~g~I~TKlD~ta~~G~---~ls~~~~~-----~~Pi~fig~--Ge~i~ 296 (321)
T Consensus 130 kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ISA~~g~GID 179 (179)
T TIGR03598 130 IPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQLFSSLKKTGIE 179 (179)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 98899997813069899999999999997336688948999799983879