HHsearch alignment for GI: 254780709 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.45 E-value=0.098 Score=32.48 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=52.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCCCHHHHHHH--HHHHHHHCCCCCCCCCCC---CCHHHHHH
Q ss_conf 4123113544444247899999998-52267426774345124568899--999753035321223586---61245422
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQL--KIWADRTSADFVCSEIGS---DAAALAYE 184 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~-~~~g~kV~lva~DtfR~aA~eQL--~~~a~~~~v~~~~~~~~~---dp~~v~~~ 184 (321)
T Consensus 194 g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs----~eql~~R~la~~s~i~~~~i~~g~l~~~~~~~~~~ 269 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS----AEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLN 269 (421)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 86899985467874599999999999866983899925799----99999999998548977666528999899999999
Q ss_pred HHHHHHHHCCCEEEEECCCCC
Q ss_conf 899996514875998654333
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTAGRL 205 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTAGR~ 205 (321)
T Consensus 270 a~~~--l~~~~l~i~d~~~~t 288 (421)
T TIGR03600 270 AVDR--LSEKDLYIDDTGGLT 288 (421)
T ss_pred HHHH--HHCCCEEEECCCCCC
T ss_conf 9998--616878996699887