HHsearch alignment for GI: 254780709 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.82 E-value=0.2 Score=30.38 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=38.2
Q ss_pred EECCCCCCCCHHHHHHH-HHHHHHHC--CCC-EEEEECCCCCHHHH---HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 31135444442478999-99998522--674-26774345124568---8999997530353212235866124542289
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGK-LSKKMSDA--GLK-VMLAAGDTFRSAAI---DQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 114 il~vG~nG~GKTTT~aK-LA~~~~~~--g~k-V~lva~DtfR~aA~---eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
T Consensus 39 vi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PT-rELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~---~-~ 113 (203)
T cd00268 39 VIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT-RELALQIAEVARKLGKHTNLKVVVIYGGTSIDK---Q-I 113 (203)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHH---H-H
T ss_conf 8997579972228888699999861667689669999687-999999999999850579838999838988799---9-9
Q ss_pred HHHHHHCCCEEEEECCCCCC
Q ss_conf 99965148759986543332
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLH 206 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~ 206 (321)
T Consensus 114 ~~-l~~~~~-IlI~TPgrl~ 131 (203)
T cd00268 114 RK-LKRGPH-IVVATPGRLL 131 (203)
T ss_pred HH-HHCCCE-EEEECCHHHH
T ss_conf 99-853875-9996818999