HHsearch alignment for GI: 254780709 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.49 E-value=0.0047 Score=41.73 Aligned_cols=148 Identities=21% Similarity=0.181 Sum_probs=79.5
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3113544444247899999998522--67426774345124568899999753035321223586612454228999965
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~--g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
T Consensus 2 v~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~---~~E~~r------giTi-------~~~~~~------~~~ 59 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVL---KEERER------GITI-------KSGVAT------FEW 59 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCC---HHHHHC------CCEE-------EEEEEE------EEE
T ss_conf 899917998999999999976472356862588850577---788863------8413-------222799------998
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 1487599865433321157789999899876302223430112310233522-----57789998764358976999654
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEMFHAVAGTTGLIMTKM 266 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~F~~~~~~~g~I~TKl 266 (321)
T Consensus 60 ~~~~i~~iDTPG--h--~~f~~~~~---~~l~-----~aD~ailvVda~~G~~~qt~~~~~~~~~~~--~p-~iv~iNKi 124 (189)
T cd00881 60 PDRRVNFIDTPG--H--EDFSSEVI---RGLS-----VSDGAILVVDANEGVQPQTREHLRIAREGG--LP-IIVAINKI 124 (189)
T ss_pred CCEEEEEEECCC--C--HHHHHHHH---HHHH-----HCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CC-EEEEEECC
T ss_conf 998999996998--1--88999999---9986-----468569999879899878999999999769--98-79999897
Q ss_pred CCCC--CHH-HHHHHHHH-----------------HCCCEEEEEC--CCCCCCC
Q ss_conf 5787--069-99999999-----------------7698899975--8981325
Q gi|254780709|r 267 DGTA--RGG-GLIPIVVT-----------------HKIPVYFLGV--GEGINDL 298 (321)
Q Consensus 267 D~ta--~~G-~~ls~~~~-----------------~~~Pi~fig~--Ge~i~Dl 298 (321)
T Consensus 125 D~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~~piv~iSA~~G~gv~~L 178 (189)
T cd00881 125 DRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHH
T ss_conf 187756299999999999875321023211012588775999888678697999