HHsearch alignment for GI: 254780709 and conserved domain: cd00983

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.

Probab=97.10  E-value=0.0029  Score=43.21  Aligned_cols=92  Identities=22%  Similarity=0.334  Sum_probs=64.4

Q ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHHH
Q ss_conf             1231135444442478999999985226742677434512456889999975303532---1223586612454228999
Q gi|254780709|r  112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF---VCSEIGSDAAALAYEAFKQ  188 (321)
Q Consensus       112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~---~~~~~~~dp~~v~~~a~~~  188 (321)
T Consensus        56 Rivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE----~a~d--~~~a~~lGVD~~~l~~~qp--~~~Eq~l~i~~~  127 (325)
T cd00983          56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE----HALD--PVYAKKLGVDLDNLLISQP--DTGEQALEIADS  127 (325)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HCCC--HHHHHHCCCCHHHEEEECC--CHHHHHHHHHHH
T ss_conf             0899988987779999999999987359839999625----4259--8999980998467589666--389999999999


Q ss_pred             HH-HHCCCEEEEECCCCCCCHHHH
Q ss_conf             96-514875998654333211577
Q gi|254780709|r  189 AQ-AKKVDVLIIDTAGRLHNNSIL  211 (321)
Q Consensus       189 a~-~~~~DvvliDTAGR~~~~~~l  211 (321)
T Consensus       128 li~s~~~dliViDSvaal~p~~E~  151 (325)
T cd00983         128 LVRSGAVDLIVVDSVAALVPKAEI  151 (325)
T ss_pred             HHCCCCCCEEEECCCCCCCCHHHH
T ss_conf             751588767998151123657887