HHsearch alignment for GI: 254780709 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.55 E-value=0.00048 Score=48.68 Aligned_cols=52 Identities=21% Similarity=0.121 Sum_probs=43.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 31135444442478999999985226742677434512456889999975303532
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~ 169 (321)
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~----~~~l~~~~~~~g~d~ 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES----PEELIENAESLGWDL 53 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC----HHHHHHHHHHCCCCH
T ss_conf 1587689999999999999999876997899995079----999999999839985