HHsearch alignment for GI: 254780709 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.55  E-value=0.00048  Score=48.68  Aligned_cols=52  Identities=21%  Similarity=0.121  Sum_probs=43.6

Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             31135444442478999999985226742677434512456889999975303532
Q gi|254780709|r  114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF  169 (321)
Q Consensus       114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~  169 (321)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~----~~~l~~~~~~~g~d~   53 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES----PEELIENAESLGWDL   53 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC----HHHHHHHHHHCCCCH
T ss_conf             1587689999999999999999876997899995079----999999999839985