HHsearch alignment for GI: 254780709 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.13 E-value=0.00056 Score=48.22 Aligned_cols=147 Identities=14% Similarity=0.205 Sum_probs=77.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
T Consensus 80 ~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~tiEdP------vE~~~~~~~Q~~v~---~~~g~~----~~~~lr~~L 146 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDP------VEYQIPGINQVQVN---EKAGLT----FARGLRAIL 146 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECC------CCCCCCCCCEEEEC---CCCCCC----HHHHHHHHH
T ss_conf 98899978999977999999998643688508998676------31456887357616---666878----999999985
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 51487599865433321157789999899876302223430112310233522577899987643589769996545787
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta 270 (321)
T Consensus 147 R~dPDvi~igEiR----D~eta~~------a~~aa~--tGhlV~tTlHa---~~a~~~i~RL~~-lgv~~~~l~------ 204 (264)
T cd01129 147 RQDPDIIMVGEIR----DAETAEI------AVQAAL--TGHLVLSTLHT---NDAPGAITRLLD-MGIESYLLS------ 204 (264)
T ss_pred CCCCCEEEECCCC----CHHHHHH------HHHHHH--HCCEEEEEECC---CCHHHHHHHHHH-CCCCHHHHH------
T ss_conf 5699988746889----9999999------999997--09969999703---999999999998-299989999------
Q ss_pred CHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 069999999997698899975898
Q gi|254780709|r 271 RGGGLIPIVVTHKIPVYFLGVGEG 294 (321)
Q Consensus 271 ~~G~~ls~~~~~~~Pi~fig~Ge~ 294 (321)
T Consensus 205 --~~l~~vi~QRLvr~LCp~Ck~~ 226 (264)
T cd01129 205 --SALIGVIAQRLVRKLCPHCKEK 226 (264)
T ss_pred --HHHHHHHHHHHHHHCCHHHCCC
T ss_conf --9999999864232218745897