HHsearch alignment for GI: 254780709 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.85 E-value=0.00042 Score=49.10 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=55.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHHCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf 4123113544444247899999998522674267743451245688999-9975303532-1223586612454228999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADF-VCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~-~~a~~~~v~~-~~~~~~~dp~~v~~~a~~~ 188 (321)
T Consensus 19 G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~~qi~~~~~~~~~~~i~v~~~~~~~~~~~~i~~~~~ 98 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETET 98 (218)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 87999989999849999999999986369869999665567699999987536665305146267876889999999997
Q ss_pred HHHHCCCEEEEECCC
Q ss_conf 965148759986543
Q gi|254780709|r 189 AQAKKVDVLIIDTAG 203 (321)
Q Consensus 189 a~~~~~DvvliDTAG 203 (321)
T Consensus 99 ~~~~~~~lvViDSi~ 113 (218)
T cd01394 99 FADEKVDLVVVDSAT 113 (218)
T ss_pred HHHCCCCEEEEECCH
T ss_conf 641477299991404