HHsearch alignment for GI: 254780709 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.02 E-value=0.0004 Score=49.28 Aligned_cols=147 Identities=21% Similarity=0.314 Sum_probs=78.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
T Consensus 43 ~VaivG~PNvGKSTLlN~L~g------~~~~v~--------------------~~~~tT----~d~~~---~~i~--~~~ 87 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTG------ADVYAE--------------------DQLFAT----LDPTT---RRLR--LPD 87 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHC------CCCEEE--------------------CCCCCC----CCCEE---EEEE--ECC
T ss_conf 799988999989999999948------996341--------------------567764----57636---6899--569
Q ss_pred CCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH--HHHHHHHHHHHHCCCC----EEEEEC
Q ss_conf 48759986543-3321157789999899876302223430112310233522--5778999876435897----699965
Q gi|254780709|r 193 KVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ--NALRQVEMFHAVAGTT----GLIMTK 265 (321)
Q Consensus 193 ~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq--~~~~~a~~F~~~~~~~----g~I~TK 265 (321)
T Consensus 88 ~~~i~l~DT~G~i~~~p~~lie~~~~tle~i~-----~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NK 162 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVA-----EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNK 162 (204)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH-----HCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 97799983686446783789999999999997-----3989999997998536677999999999806555760788867
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf 45787069999999997698899975--898132555
Q gi|254780709|r 266 MDGTARGGGLIPIVVTHKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 266 lD~ta~~G~~ls~~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
T Consensus 163 iDl~~~~-~~~~~~~~~~~~~i~ISA~~g~Gid~L~~ 198 (204)
T cd01878 163 IDLLDDE-ELEERLEAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred CCCCCCH-HHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 0479957-58999970899879998868949999999