HHsearch alignment for GI: 254780709 and conserved domain: cd01879

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.92  E-value=0.002  Score=44.29  Aligned_cols=143  Identities=21%  Similarity=0.200  Sum_probs=74.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             13544444247899999998522674267743451245688999997530353212235866124542289999651487
Q gi|254780709|r  116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD  195 (321)
Q Consensus       116 ~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~D  195 (321)
T Consensus         1 ivG~pNvGKSTL~N~L~g------~~~~-vs-------------------~~pgtT----rd~~~~~------~~~~~~~   44 (158)
T cd01879           1 LVGNPNVGKTTLFNALTG------ARQK-VG-------------------NWPGVT----VEKKEGR------FKLGGKE   44 (158)
T ss_pred             CCCCCCCCHHHHHHHHHC------CCCE-EC-------------------CCCCCE----EEEEEEE------EEECCEE
T ss_conf             979898889999999959------9864-61-------------------789827----6347889------9629937


Q ss_pred             EEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHH
Q ss_conf             59986543-332115778999989987630222343011231023352257789998764-3589769996545787069
Q gi|254780709|r  196 VLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTARGG  273 (321)
Q Consensus       196 vvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~-~~~~~g~I~TKlD~ta~~G  273 (321)
T Consensus        45 ~~lvDtpGi~~~~~~~-~~e--~i~~~~--~~~~~~d~vl~vvD~~~~~~~l~~~~~l~~~~~p-~ivV~NK~D~~~~~~  118 (158)
T cd01879          45 IEIVDLPGTYSLSPYS-EDE--KVARDF--LLGEKPDLIVNVVDATNLERNLYLTLQLLELGLP-VVVALNMIDEAEKRG  118 (158)
T ss_pred             EEEEECCCCCCCCCCC-HHH--HHHHHH--HHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC-EEEEEEHHHHHHHCC
T ss_conf             9999798741256413-567--899999--9851787179997774067768999999865998-899940277655225


Q ss_pred             HH---HHHHHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf             99---9999997698899975--898132555
Q gi|254780709|r  274 GL---IPIVVTHKIPVYFLGV--GEGINDLEP  300 (321)
Q Consensus       274 ~~---ls~~~~~~~Pi~fig~--Ge~i~Dl~~  300 (321)
T Consensus       119 ~~~~~~~l~~~~~~~ii~iSA~~g~Gi~~L~~  150 (158)
T cd01879         119 IKIDLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             CHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf             46679999987199489998778979999999