HHsearch alignment for GI: 254780709 and conserved domain: cd01879
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.92 E-value=0.002 Score=44.29 Aligned_cols=143 Identities=21% Similarity=0.200 Sum_probs=74.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 13544444247899999998522674267743451245688999997530353212235866124542289999651487
Q gi|254780709|r 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 (321)
Q Consensus 116 ~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~D 195 (321)
T Consensus 1 ivG~pNvGKSTL~N~L~g------~~~~-vs-------------------~~pgtT----rd~~~~~------~~~~~~~ 44 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG------ARQK-VG-------------------NWPGVT----VEKKEGR------FKLGGKE 44 (158)
T ss_pred CCCCCCCCHHHHHHHHHC------CCCE-EC-------------------CCCCCE----EEEEEEE------EEECCEE
T ss_conf 979898889999999959------9864-61-------------------789827----6347889------9629937
Q ss_pred EEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHH
Q ss_conf 59986543-332115778999989987630222343011231023352257789998764-3589769996545787069
Q gi|254780709|r 196 VLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTARGG 273 (321)
Q Consensus 196 vvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~-~~~~~g~I~TKlD~ta~~G 273 (321)
T Consensus 45 ~~lvDtpGi~~~~~~~-~~e--~i~~~~--~~~~~~d~vl~vvD~~~~~~~l~~~~~l~~~~~p-~ivV~NK~D~~~~~~ 118 (158)
T cd01879 45 IEIVDLPGTYSLSPYS-EDE--KVARDF--LLGEKPDLIVNVVDATNLERNLYLTLQLLELGLP-VVVALNMIDEAEKRG 118 (158)
T ss_pred EEEEECCCCCCCCCCC-HHH--HHHHHH--HHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC-EEEEEEHHHHHHHCC
T ss_conf 9999798741256413-567--899999--9851787179997774067768999999865998-899940277655225
Q ss_pred HH---HHHHHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf 99---9999997698899975--898132555
Q gi|254780709|r 274 GL---IPIVVTHKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 274 ~~---ls~~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
T Consensus 119 ~~~~~~~l~~~~~~~ii~iSA~~g~Gi~~L~~ 150 (158)
T cd01879 119 IKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 46679999987199489998778979999999