HHsearch alignment for GI: 254780709 and conserved domain: cd01881

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.85  E-value=0.022  Score=37.04  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=53.4

Q ss_pred             CCCEEEEECCC---CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHH-HHH---------
Q ss_conf             48759986543---3321157789999899876302223430112310233522-----57789998-764---------
Q gi|254780709|r  193 KVDVLIIDTAG---RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEM-FHA---------  254 (321)
Q Consensus       193 ~~DvvliDTAG---R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~-F~~---------  254 (321)
T Consensus        43 ~~~i~~~DtpGi~~~~~~~~~~~~~~l---~~~~-----~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~  114 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFL---AHIR-----RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETI  114 (176)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHH---HHHH-----CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf             966999957875457337878999999---8741-----08899999989876554544589999999999997115665


Q ss_pred             -----HCCCCEEEEECCCCCCCHHHHH----HHHHHHCCCEEEEEC--CCCCCCCC
Q ss_conf             -----3589769996545787069999----999997698899975--89813255
Q gi|254780709|r  255 -----VAGTTGLIMTKMDGTARGGGLI----PIVVTHKIPVYFLGV--GEGINDLE  299 (321)
Q Consensus       255 -----~~~~~g~I~TKlD~ta~~G~~l----s~~~~~~~Pi~fig~--Ge~i~Dl~  299 (321)
T Consensus       115 ~~~~~~kp-~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iSA~~~~gi~~L~  169 (176)
T cd01881         115 LGLLTAKP-VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELI  169 (176)
T ss_pred             HHHHCCCC-EEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf             55432697-19999686034700315999999974689958999777887999999