HHsearch alignment for GI: 254780709 and conserved domain: cd01881
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.85 E-value=0.022 Score=37.04 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=53.4
Q ss_pred CCCEEEEECCC---CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHH-HHH---------
Q ss_conf 48759986543---3321157789999899876302223430112310233522-----57789998-764---------
Q gi|254780709|r 193 KVDVLIIDTAG---RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEM-FHA--------- 254 (321)
Q Consensus 193 ~~DvvliDTAG---R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~-F~~--------- 254 (321)
T Consensus 43 ~~~i~~~DtpGi~~~~~~~~~~~~~~l---~~~~-----~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~ 114 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFL---AHIR-----RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETI 114 (176)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHH---HHHH-----CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 966999957875457337878999999---8741-----08899999989876554544589999999999997115665
Q ss_pred -----HCCCCEEEEECCCCCCCHHHHH----HHHHHHCCCEEEEEC--CCCCCCCC
Q ss_conf -----3589769996545787069999----999997698899975--89813255
Q gi|254780709|r 255 -----VAGTTGLIMTKMDGTARGGGLI----PIVVTHKIPVYFLGV--GEGINDLE 299 (321)
Q Consensus 255 -----~~~~~g~I~TKlD~ta~~G~~l----s~~~~~~~Pi~fig~--Ge~i~Dl~ 299 (321)
T Consensus 115 ~~~~~~kp-~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iSA~~~~gi~~L~ 169 (176)
T cd01881 115 LGLLTAKP-VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELI 169 (176)
T ss_pred HHHHCCCC-EEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 55432697-19999686034700315999999974689958999777887999999