>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

Probab=97.16 E-value=0.004 Score=42.25 Aligned_cols=143 Identities=17% Similarity=0.256 Sum_probs=76.0 Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHHHH Q ss_conf 311354444424789999999852267426774345124568899999753035321223586612-4542289999651 Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAK 192 (321) Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~-~v~~~a~~~a~~~ 192 (321) T Consensus 3 VAiiG~pNvGKSTLlN~l~------~~~~~V~--~~--pg----------------TT----~~~~~g~i----~--~~~ 46 (170) T cd01898 3 VGLVGLPNAGKSTLLSAIS------NAKPKIA--DY--PF----------------TT----LVPNLGVV----R--VDD 46 (170) T ss_pred EEEECCCCCCHHHHHHHHH------CCCCEEE--CC--CC----------------CC----CCCEEEEE----E--ECC T ss_conf 8998999998999999996------7876032--56--66----------------52----37447799----9--369 Q ss_pred CCCEEEEECCCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---------CCE Q ss_conf 487599865433---32115778999989987630222343011231023352257789998764358---------976 Q gi|254780709|r 193 KVDVLIIDTAGR---LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG---------TTG 260 (321) Q Consensus 193 ~~DvvliDTAGR---~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~---------~~g 260 (321) T Consensus 47 ~~~i~~~DtpGi~~~~~~~~~l~~~~---l~~i~-----~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~i 118 (170) T cd01898 47 GRSFVVADIPGLIEGASEGKGLGHRF---LRHIE-----RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRI 118 (170) T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHH---HHCCC-----CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCE T ss_conf 85699964886444554662248999---86133-----45617999989987898999999999999827444038650 Q ss_pred EEEECCCCCCCH--HHHHHH--HHHHCCCEEEEEC--CCCCCCCCC Q ss_conf 999654578706--999999--9997698899975--898132555 Q gi|254780709|r 261 LIMTKMDGTARG--GGLIPI--VVTHKIPVYFLGV--GEGINDLEP 300 (321) Q Consensus 261 ~I~TKlD~ta~~--G~~ls~--~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321) T Consensus 119 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 164 (170) T cd01898 119 VVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLR 164 (170) T ss_pred EEEEHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH T ss_conf 6776202428356389999999856999589997547979999999

HHsearch alignment for GI: 254780709 and conserved domain: cd01898