HHsearch alignment for GI: 254780709 and conserved domain: cd02035
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=98.73 E-value=3.1e-07 Score=71.11 Aligned_cols=144 Identities=19% Similarity=0.255 Sum_probs=75.6
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC---------HHHH------HH-HHHHHHHHCCCCC------
Q ss_conf 231135444442478999999985226742677434512---------4568------89-9999753035321------
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR---------SAAI------DQ-LKIWADRTSADFV------ 170 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR---------~aA~------eQ-L~~~a~~~~v~~~------ 170 (321)
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~~L~~~~~~~~~e~~~~~~~~~v~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98997899661999999999999968994999958987665323479865135888766679999875016665333110
Q ss_pred ------CCCCCCCCH----HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE--EEEECC
Q ss_conf ------223586612----45422899996514875998654333211577899998998763022234301--123102
Q gi|254780709|r 171 ------CSEIGSDAA----ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS--VLQVLD 238 (321)
Q Consensus 171 ------~~~~~~dp~----~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~--~~lVld 238 (321)
T Consensus 81 ~~~~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpPTGhtlrlL~~~~------L~-----d~~~t~~~lVt~ 149 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVREL------LT-----DPERTSFRLVTL 149 (217)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH------HC-----CCCCCEEEEEEC
T ss_conf 0114567776159978999999999999854899889982898556999867887------24-----888767999957
Q ss_pred C--CCCHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 3--352257789998764-3589769996545
Q gi|254780709|r 239 A--TTGQNALRQVEMFHA-VAGTTGLIMTKMD 267 (321)
Q Consensus 239 a--~~gq~~~~~a~~F~~-~~~~~g~I~TKlD 267 (321)
T Consensus 150 Pe~~~~~et~r~~~~L~~~gi~v~~vVvN~v~ 181 (217)
T cd02035 150 PEKLPLYETERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 76217999999999999779988989895882