HHsearch alignment for GI: 254780709 and conserved domain: cd02117

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=98.69  E-value=1.2e-06  Score=66.94  Aligned_cols=162  Identities=17%  Similarity=0.205  Sum_probs=95.3

Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-----------H-HHHHHHH--HHH-----------CC
Q ss_conf             231135444442478999999985226742677434512456-----------8-8999997--530-----------35
Q gi|254780709|r  113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA-----------I-DQLKIWA--DRT-----------SA  167 (321)
Q Consensus       113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA-----------~-eQL~~~a--~~~-----------~v  167 (321)
T Consensus         2 ~iaiyGKGGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~gv   81 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGGV   81 (212)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCE
T ss_conf             59998898356877899999999986996999903899873303119977871999987527866445667899668870


Q ss_pred             CCCCCCCCCCCHHH------HHHHHHHH-----HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             32122358661245------42289999-----65148759986543332115778999989987630222343011231
Q gi|254780709|r  168 DFVCSEIGSDAAAL------AYEAFKQA-----QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV  236 (321)
Q Consensus       168 ~~~~~~~~~dp~~v------~~~a~~~a-----~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lV  236 (321)
T Consensus        82 ~~ve--aggp~~g~~~ag~~i~~~~~ll~~~~~~~~~~D~IliD~lGdvv~~gf~~-pi---~-------~~~Ad~vlIv  148 (212)
T cd02117          82 KCVE--SGGPEPGVGCAGRGVITAVNLLEKEGFAEDDLDVVLYDVLGDVVCGGFAM-PI---R-------EGKADEIYIV  148 (212)
T ss_pred             EEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCC-CC---C-------CCCCCEEEEE
T ss_conf             8998--89977676545411788999999741002579999996588540356334-32---1-------1668889998


Q ss_pred             CCCC----CC-HHHHHHHHHHHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             0233----52-2577899987643--58976999654578706999999999769889
Q gi|254780709|r  237 LDAT----TG-QNALRQVEMFHAV--AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY  287 (321)
Q Consensus       237 lda~----~g-q~~~~~a~~F~~~--~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~  287 (321)
T Consensus       149 tt~E~~Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~~~~~~i~~f~~~~g~~vl  206 (212)
T cd02117         149 TSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVI  206 (212)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf             0693578898899999999997367981489998467888649999999998399189