HHsearch alignment for GI: 254780709 and conserved domain: cd03110
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.35 E-value=1.8e-05 Score=58.63 Aligned_cols=156 Identities=22% Similarity=0.231 Sum_probs=83.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCH-------------
Q ss_conf 311354444424789999999852267426774345124568899999753-035321223586612-------------
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-TSADFVCSEIGSDAA------------- 179 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~-~~v~~~~~~~~~dp~------------- 179 (321)
T Consensus 3 aV~SgKGGVGKTT~a~nLA~~l----~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (179)
T cd03110 3 AVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVT 78 (179)
T ss_pred EEEECCCCCHHHHHHHHHHHHC----CCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCCCHHHHHH
T ss_conf 9995899860999999999974----287199941899857777187656321223046533515066532351768899
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC--CHHHHHHHHHHHHH-C
Q ss_conf 45422899996514875998654333211577899998998763022234301123102335--22577899987643-5
Q gi|254780709|r 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT--GQNALRQVEMFHAV-A 256 (321)
Q Consensus 180 ~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~--gq~~~~~a~~F~~~-~ 256 (321)
T Consensus 79 ~~~~~~~~~~~~~~~D~viiD~Ppg~~--~~~~~al~------------~ad~~iiVttP~~~si~d~~r~i~l~~~~~~ 144 (179)
T cd03110 79 EVRKHAKEIAKAEGAELIIIDGPPGIG--CPVIASLT------------GADAALLVTEPTPSGLHDLERAVELVRHFGI 144 (179)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCC--HHHHHHHH------------CCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 999999998644379989981899975--78999997------------3994999819947899999999999998299
Q ss_pred CCCEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEE
Q ss_conf 8976999654578706-999999999769889997
Q gi|254780709|r 257 GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 257 ~~~g~I~TKlD~ta~~-G~~ls~~~~~~~Pi~fig 290 (321)
T Consensus 145 ~~-gvV~Nr~~~~~~~~~~i~~~~~~~~vp--~LG 176 (179)
T cd03110 145 PV-GVVINKYDLNDEIAEEIEDYCEEEGIP--ILG 176 (179)
T ss_pred CE-EEEEECCCCCCCCHHHHHHHHHHHCCC--EEE
T ss_conf 78-999968878876348999999980999--898