HHsearch alignment for GI: 254780709 and conserved domain: cd03110

>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.35  E-value=1.8e-05  Score=58.63  Aligned_cols=156  Identities=22%  Similarity=0.231  Sum_probs=83.9

Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCH-------------
Q ss_conf             311354444424789999999852267426774345124568899999753-035321223586612-------------
Q gi|254780709|r  114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-TSADFVCSEIGSDAA-------------  179 (321)
Q Consensus       114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~-~~v~~~~~~~~~dp~-------------  179 (321)
T Consensus         3 aV~SgKGGVGKTT~a~nLA~~l----~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   78 (179)
T cd03110           3 AVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVT   78 (179)
T ss_pred             EEEECCCCCHHHHHHHHHHHHC----CCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCCCHHHHHH
T ss_conf             9995899860999999999974----287199941899857777187656321223046533515066532351768899


Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC--CHHHHHHHHHHHHH-C
Q ss_conf             45422899996514875998654333211577899998998763022234301123102335--22577899987643-5
Q gi|254780709|r  180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT--GQNALRQVEMFHAV-A  256 (321)
Q Consensus       180 ~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~--gq~~~~~a~~F~~~-~  256 (321)
T Consensus        79 ~~~~~~~~~~~~~~~D~viiD~Ppg~~--~~~~~al~------------~ad~~iiVttP~~~si~d~~r~i~l~~~~~~  144 (179)
T cd03110          79 EVRKHAKEIAKAEGAELIIIDGPPGIG--CPVIASLT------------GADAALLVTEPTPSGLHDLERAVELVRHFGI  144 (179)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCC--HHHHHHHH------------CCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             999999998644379989981899975--78999997------------3994999819947899999999999998299


Q ss_pred             CCCEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEE
Q ss_conf             8976999654578706-999999999769889997
Q gi|254780709|r  257 GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLG  290 (321)
Q Consensus       257 ~~~g~I~TKlD~ta~~-G~~ls~~~~~~~Pi~fig  290 (321)
T Consensus       145 ~~-gvV~Nr~~~~~~~~~~i~~~~~~~~vp--~LG  176 (179)
T cd03110         145 PV-GVVINKYDLNDEIAEEIEDYCEEEGIP--ILG  176 (179)
T ss_pred             CE-EEEEECCCCCCCCHHHHHHHHHHHCCC--EEE
T ss_conf             78-999968878876348999999980999--898