HHsearch alignment for GI: 254780709 and conserved domain: cd03112
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.43 E-value=0.0013 Score=45.76 Aligned_cols=146 Identities=19% Similarity=0.257 Sum_probs=78.5
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC-------CCCHHHHHHH
Q ss_conf 231135444442478999999985226742677434512456889999975303532122358-------6612454228
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-------SDAAALAYEA 185 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~-------~dp~~v~~~a 185 (321)
T Consensus 2 v~iitGFLGaGKTTll~~lL~~--~~~~~~avIvNEfG~~~-ID~~ll--~~~~~~v~el~~GCiCCs~~~dl~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE--QHGRKIAVIENEFGEVG-IDNQLV--VDTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHHC--CCCCCEEEEEECCCCCC-CCHHHH--HCCCCEEEEECCCEEEEECCCHHHHHHHHH
T ss_conf 0899848889999999999847--88997799970765546-316676--378824999338714652251589999999
Q ss_pred HHHHH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCCCEEE
Q ss_conf 99996--51487599865433321157789999899876302223430112310233522577899-9876435897699
Q gi|254780709|r 186 FKQAQ--AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLI 262 (321)
Q Consensus 186 ~~~a~--~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~~~~g~I 262 (321)
T Consensus 77 ~~~~~~~~~~~d~iiIE~SGla~-P~~i~~~~~~-~~~l~--~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD~iv 152 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLAD-PGPVAQTFFM-DEELA--ERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRIL 152 (158)
T ss_pred HHHHHCCCCCCCEEEEECCCCCC-CHHHHHHHHC-CHHHH--CEEECCCEEEEECHHHHHHHHHCCHHHHHHHHHCCEEE
T ss_conf 99765157887889996368788-2899998860-71432--10743876999818987764324469999999689999
Q ss_pred EECCC
Q ss_conf 96545
Q gi|254780709|r 263 MTKMD 267 (321)
Q Consensus 263 ~TKlD 267 (321)
T Consensus 153 lnK~D 157 (158)
T cd03112 153 LNKTD 157 (158)
T ss_pred EECCC
T ss_conf 96677