HHsearch alignment for GI: 254780709 and conserved domain: cd03112

>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.43  E-value=0.0013  Score=45.76  Aligned_cols=146  Identities=19%  Similarity=0.257  Sum_probs=78.5

Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC-------CCCHHHHHHH
Q ss_conf             231135444442478999999985226742677434512456889999975303532122358-------6612454228
Q gi|254780709|r  113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-------SDAAALAYEA  185 (321)
Q Consensus       113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~-------~dp~~v~~~a  185 (321)
T Consensus         2 v~iitGFLGaGKTTll~~lL~~--~~~~~~avIvNEfG~~~-ID~~ll--~~~~~~v~el~~GCiCCs~~~dl~~~l~~l   76 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE--QHGRKIAVIENEFGEVG-IDNQLV--VDTDEEIIEMNNGCICCTVRGDLIRALLDL   76 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHHC--CCCCCEEEEEECCCCCC-CCHHHH--HCCCCEEEEECCCEEEEECCCHHHHHHHHH
T ss_conf             0899848889999999999847--88997799970765546-316676--378824999338714652251589999999


Q ss_pred             HHHHH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCCCEEE
Q ss_conf             99996--51487599865433321157789999899876302223430112310233522577899-9876435897699
Q gi|254780709|r  186 FKQAQ--AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLI  262 (321)
Q Consensus       186 ~~~a~--~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~~~~g~I  262 (321)
T Consensus        77 ~~~~~~~~~~~d~iiIE~SGla~-P~~i~~~~~~-~~~l~--~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD~iv  152 (158)
T cd03112          77 LERLDAGKIAFDRIVIETTGLAD-PGPVAQTFFM-DEELA--ERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRIL  152 (158)
T ss_pred             HHHHHCCCCCCCEEEEECCCCCC-CHHHHHHHHC-CHHHH--CEEECCCEEEEECHHHHHHHHHCCHHHHHHHHHCCEEE
T ss_conf             99765157887889996368788-2899998860-71432--10743876999818987764324469999999689999


Q ss_pred             EECCC
Q ss_conf             96545
Q gi|254780709|r  263 MTKMD  267 (321)
Q Consensus       263 ~TKlD  267 (321)
T Consensus       153 lnK~D  157 (158)
T cd03112         153 LNKTD  157 (158)
T ss_pred             EECCC
T ss_conf             96677