HHsearch alignment for GI: 254780709 and conserved domain: cd03116
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.34 E-value=0.0002 Score=51.38 Aligned_cols=71 Identities=27% Similarity=0.428 Sum_probs=48.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l~~~G~~V~~iKH~~H~-------------f~~----D~~GkDS-------~r-~~ 55 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHD-------------FDI----DTPGKDS-------YR-HR 55 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-------------CCC----CCCCCHH-------HH-HH
T ss_conf 92999996799999999999999999779859899734767-------------777----7898441-------77-67
Q ss_pred HHCCCEEEEECCCCCC
Q ss_conf 5148759986543332
Q gi|254780709|r 191 AKKVDVLIIDTAGRLH 206 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~ 206 (321)
T Consensus 56 ~AGA~~v~v~s~~~~~ 71 (159)
T cd03116 56 EAGAEEVLVSSPRRWA 71 (159)
T ss_pred HCCCCEEEEECCCEEE
T ss_conf 5297379997567188