HHsearch alignment for GI: 254780709 and conserved domain: cd04151
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=96.22 E-value=0.01 Score=39.39 Aligned_cols=131 Identities=19% Similarity=0.265 Sum_probs=65.7
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
T Consensus 2 il~lG~~~~GKTsll~~~~----~-~~~~-----~-----------------~~pTig----~~~~~i--------~~~~ 42 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQ----L-GEVV-----T-----------------TIPTIG----FNVETV--------TYKN 42 (158)
T ss_pred EEEECCCCCCHHHHHHHHH----C-CCCC-----C-----------------CCCCCC----CCEEEE--------EECC
T ss_conf 9999999998999999997----0-9967-----7-----------------578488----246999--------9898
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHC--------CCCEEEEE
Q ss_conf 87599865433321157789999899876302223430112310233522577899-9876435--------89769996
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVA--------GTTGLIMT 264 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~--------~~~g~I~T 264 (321)
T Consensus 43 ~~~~iwD~~G~e~~r~-~~----------~~y~~-~~~~ii~VvD~sd~-~~~~~~~~~l~~~l~~~~~~~~pi-liv~N 108 (158)
T cd04151 43 LKFQVWDLGGQTSIRP-YW----------RCYYS-NTDAIIYVVDSTDR-DRLGTAKEELHAMLEEEELKGAVL-LVFAN 108 (158)
T ss_pred EEEEEEECCCCCCCCH-HH----------HHHCC-CCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHHHCCCCE-EEEEE
T ss_conf 8999996798624462-78----------87466-78899999745787-899999999999983465369819-99997
Q ss_pred CCCCCCCH-----HHHHHHHHHHCCCEEEEE----CCCCCCC
Q ss_conf 54578706-----999999999769889997----5898132
Q gi|254780709|r 265 KMDGTARG-----GGLIPIVVTHKIPVYFLG----VGEGIND 297 (321)
Q Consensus 265 KlD~ta~~-----G~~ls~~~~~~~Pi~fig----~Ge~i~D 297 (321)
T Consensus 109 K~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~tSA~tG~gV~e 150 (158)
T cd04151 109 KQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 667765779999999985987416996899967878939999