HHsearch alignment for GI: 254780709 and conserved domain: cd04160

>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.11  E-value=0.0015  Score=45.28  Aligned_cols=139  Identities=17%  Similarity=0.279  Sum_probs=67.8

Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             311354444424789999999852-2674267743451245688999997530353212235866124542289999651
Q gi|254780709|r  114 ILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK  192 (321)
Q Consensus       114 il~vG~nG~GKTTT~aKLA~~~~~-~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~  192 (321)
T Consensus         2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~-----~~~-----------~~Tvg~~~~---------~--------i~~~   48 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPP-----SKI-----------TPTVGLNIG---------T--------IEVG   48 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCC-----CCC-----------CCCCCEEEE---------E--------EEEC
T ss_conf             999999998888999988750367677765-----540-----------353132689---------9--------9989


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHHHC---CCCE----EEEE
Q ss_conf             48759986543332115778999989987630222343011231023352257789-99876435---8976----9996
Q gi|254780709|r  193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVA---GTTG----LIMT  264 (321)
Q Consensus       193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~-a~~F~~~~---~~~g----~I~T  264 (321)
T Consensus        49 ~~~l~iwD~~Gq-----e~~~~l~------~~y~~-~a~~ii~VvD~sd~-~~~~~~~~~l~~~~~~~~~~~~pili~~N  115 (167)
T cd04160          49 NARLKFWDLGGQ-----ESLRSLW------DKYYA-ECHAIIYVIDSTDR-ERFEESKSALEKVLRNEALEGVPLLILAN  115 (167)
T ss_pred             CEEEEEEECCCC-----HHHHHHH------HHHCC-CCCEEEEEEECCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             999999968987-----8887899------87428-98789999866867-88999999999975110248962999970


Q ss_pred             CCCCCCC-H----HHHHHHHHH--HCCCEEEEE----CCCCCCCC
Q ss_conf             5457870-6----999999999--769889997----58981325
Q gi|254780709|r  265 KMDGTAR-G----GGLIPIVVT--HKIPVYFLG----VGEGINDL  298 (321)
Q Consensus       265 KlD~ta~-~----G~~ls~~~~--~~~Pi~fig----~Ge~i~Dl  298 (321)
T Consensus       116 K~Dl~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~SAktG~Gv~e~  160 (167)
T cd04160         116 KQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG  160 (167)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
T ss_conf             667665778999999999999985469989999887829498999