Query gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 321
No_of_seqs 173 out of 3692
Neff 6.6
Searched_HMMs 39220
Date Sun May 29 20:26:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780709.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00064 ftsY signal recognit 100.0 0 0 734.6 26.6 272 40-311 1-284 (284)
2 TIGR00959 ffh signal recogniti 100.0 0 0 733.1 26.6 289 21-316 1-307 (439)
3 PRK10416 cell division protein 100.0 0 0 717.2 34.2 309 6-315 190-499 (499)
4 COG0552 FtsY Signal recognitio 100.0 0 0 690.2 30.2 310 3-312 23-340 (340)
5 PRK10867 signal recognition pa 100.0 0 0 664.7 30.7 290 21-317 2-301 (453)
6 PRK00771 signal recognition pa 100.0 0 0 647.5 30.3 285 20-317 2-295 (433)
7 COG0541 Ffh Signal recognition 100.0 0 0 645.3 31.2 290 21-317 2-300 (451)
8 TIGR01425 SRP54_euk signal rec 100.0 0 0 594.1 22.1 292 21-318 2-322 (453)
9 KOG0780 consensus 100.0 0 0 555.8 25.1 290 22-318 4-302 (483)
10 PRK06731 flhF flagellar biosyn 100.0 0 0 512.5 27.9 254 44-312 13-268 (270)
11 PRK12726 flagellar biosynthesi 100.0 0 0 482.3 24.3 241 53-314 159-401 (407)
12 PRK12723 flagellar biosynthesi 100.0 0 0 445.5 28.4 265 39-318 104-377 (388)
13 pfam00448 SRP54 SRP54-type pro 100.0 0 0 455.5 20.1 196 111-312 1-196 (196)
14 KOG0781 consensus 100.0 0 0 450.6 23.7 284 22-311 274-586 (587)
15 PRK12724 flagellar biosynthesi 100.0 0 0 441.5 24.8 265 43-318 154-422 (432)
16 PRK05703 flhF flagellar biosyn 100.0 0 0 421.0 29.3 286 11-318 118-408 (412)
17 PRK06995 flhF flagellar biosyn 100.0 0 0 408.5 28.6 286 11-316 82-372 (404)
18 cd03115 SRP The signal recogni 100.0 0 0 401.9 17.6 173 112-290 1-173 (173)
19 PRK11889 flhF flagellar biosyn 100.0 0 0 390.0 24.6 250 47-312 181-434 (436)
20 COG1419 FlhF Flagellar GTP-bin 100.0 0 0 384.3 25.5 218 85-318 180-401 (407)
21 PRK12727 flagellar biosynthesi 100.0 0 0 369.3 26.2 274 14-310 260-537 (557)
22 TIGR03499 FlhF flagellar biosy 100.0 3.5E-31 8.9E-36 239.2 18.2 175 14-203 106-282 (282)
23 PRK09841 cryptic autophosphory 98.9 4.7E-08 1.2E-12 76.9 13.3 149 108-269 528-706 (726)
24 cd00550 ArsA_ATPase Oxyanion-t 98.9 5.8E-08 1.5E-12 76.2 11.9 38 112-149 1-38 (254)
25 cd03114 ArgK-like The function 98.8 6.3E-08 1.6E-12 76.0 10.3 137 113-267 1-148 (148)
26 PHA02518 ParA-like protein; Pr 98.8 2.6E-07 6.7E-12 71.6 13.3 145 120-288 10-166 (211)
27 PRK11519 tyrosine kinase; Prov 98.8 3.7E-07 9.3E-12 70.6 13.4 149 108-269 523-701 (720)
28 pfam02374 ArsA_ATPase Anion-tr 98.8 2.7E-07 6.9E-12 71.5 12.6 38 112-149 2-39 (304)
29 pfam02881 SRP54_N SRP54-type p 98.8 5.4E-08 1.4E-12 76.4 9.0 76 17-92 1-77 (77)
30 cd02035 ArsA ArsA ATPase funct 98.7 3.1E-07 7.8E-12 71.1 11.7 144 113-267 1-181 (217)
31 pfam07015 VirC1 VirC1 protein. 98.7 6.6E-08 1.7E-12 75.8 8.2 159 113-295 3-180 (231)
32 cd02117 NifH_like This family 98.7 1.2E-06 3.1E-11 66.9 13.8 162 113-287 2-206 (212)
33 PRK13849 putative crown gall t 98.7 1.1E-07 2.7E-12 74.4 8.1 160 113-295 3-180 (231)
34 PRK09435 arginine/ornithine tr 98.7 2.1E-06 5.5E-11 65.2 14.7 173 108-299 46-245 (325)
35 pfam01656 CbiA CobQ/CobB/MinD/ 98.7 9.8E-07 2.5E-11 67.6 12.7 157 116-287 4-198 (212)
36 COG0378 HypB Ni2+-binding GTPa 98.6 1.1E-07 2.9E-12 74.2 6.9 172 107-301 8-195 (202)
37 pfam00142 Fer4_NifH 4Fe-4S iro 98.6 9.7E-07 2.5E-11 67.6 11.4 164 113-290 2-206 (269)
38 pfam03308 ArgK ArgK protein. T 98.6 7.4E-06 1.9E-10 61.4 15.2 172 108-301 26-224 (267)
39 smart00382 AAA ATPases associa 98.6 5.5E-07 1.4E-11 69.4 9.3 97 111-213 2-98 (148)
40 TIGR03371 cellulose_yhjQ cellu 98.5 3.6E-06 9.1E-11 63.7 12.4 159 113-286 3-200 (246)
41 TIGR03018 pepcterm_TyrKin exop 98.5 7.4E-06 1.9E-10 61.4 13.9 141 108-263 32-206 (207)
42 TIGR03029 EpsG chain length de 98.5 3.4E-06 8.7E-11 63.8 12.0 143 110-265 102-274 (274)
43 pfam09140 MipZ ATPase MipZ. Mi 98.5 6.3E-07 1.6E-11 68.9 8.0 85 121-206 11-111 (261)
44 cd02040 NifH NifH gene encodes 98.5 5.3E-06 1.3E-10 62.4 12.7 165 112-290 2-207 (270)
45 COG1703 ArgK Putative periplas 98.5 8.8E-06 2.2E-10 60.9 13.5 147 106-274 46-204 (323)
46 cd02032 Bchl_like This family 98.5 1.5E-05 3.9E-10 59.2 14.5 156 113-288 2-201 (267)
47 cd02036 MinD Bacterial cell di 98.4 3E-06 7.8E-11 64.1 10.0 140 114-287 2-147 (179)
48 PRK10818 cell division inhibit 98.4 5.5E-06 1.4E-10 62.3 10.4 151 113-277 4-195 (270)
49 TIGR01007 eps_fam capsular exo 98.4 5.9E-06 1.5E-10 62.1 10.4 145 111-269 19-196 (207)
50 pfam02492 cobW CobW/HypB/UreG, 98.4 4.6E-06 1.2E-10 62.9 9.7 143 113-270 2-151 (174)
51 PRK13768 GTPase; Provisional 98.4 4.5E-06 1.1E-10 62.9 9.6 170 111-299 2-239 (253)
52 cd03110 Fer4_NifH_child This p 98.3 1.8E-05 4.7E-10 58.6 12.3 156 114-290 3-176 (179)
53 cd02037 MRP-like MRP (Multiple 98.3 7.7E-06 2E-10 61.3 10.4 143 114-290 3-163 (169)
54 PRK13231 nitrogenase reductase 98.3 2E-05 5E-10 58.4 12.2 158 113-287 4-199 (264)
55 COG0003 ArsA Predicted ATPase 98.3 1.8E-06 4.6E-11 65.8 6.8 39 111-149 2-40 (322)
56 TIGR01420 pilT_fam twitching m 98.3 2.5E-07 6.4E-12 71.7 2.4 196 26-252 45-244 (350)
57 PRK11131 ATP-dependent RNA hel 98.3 0.00041 1.1E-08 49.2 18.5 132 113-254 91-239 (1295)
58 PRK13235 nifH nitrogenase redu 98.3 2.1E-05 5.5E-10 58.2 11.8 166 113-289 3-209 (274)
59 cd02042 ParA ParA and ParB of 98.3 1.4E-06 3.6E-11 66.5 5.2 47 120-209 9-55 (104)
60 cd02038 FleN-like FleN is a me 98.3 3.3E-05 8.4E-10 56.9 12.0 124 116-291 5-137 (139)
61 PRK13233 nifH nitrogenase redu 98.3 6E-05 1.5E-09 55.0 13.3 165 111-287 2-208 (275)
62 CHL00072 chlL photochlorophyll 98.2 0.00018 4.6E-09 51.7 15.5 182 113-314 2-247 (271)
63 PRK09361 radB DNA repair and r 98.2 1.5E-05 3.8E-10 59.3 10.0 92 111-203 23-117 (224)
64 PRK00090 bioD dithiobiotin syn 98.2 0.00016 4E-09 52.1 15.1 174 113-300 1-206 (223)
65 PRK13232 nifH nitrogenase redu 98.2 3.2E-05 8.1E-10 57.0 11.3 161 113-286 3-204 (273)
66 COG1192 Soj ATPases involved i 98.2 7.1E-06 1.8E-10 61.6 7.2 42 111-152 2-45 (259)
67 KOG0924 consensus 98.2 1.9E-05 4.8E-10 58.6 9.4 155 112-278 372-553 (1042)
68 pfam06564 YhjQ YhjQ protein. T 98.2 3.6E-05 9.1E-10 56.6 10.7 149 113-281 3-189 (244)
69 PRK13185 chlL protochlorophyll 98.2 0.00015 3.9E-09 52.1 13.9 186 112-315 3-249 (269)
70 PRK13705 plasmid-partitioning 98.2 4.2E-06 1.1E-10 63.2 5.6 43 108-150 103-147 (388)
71 PRK11670 putative ATPase; Prov 98.2 9.1E-05 2.3E-09 53.8 12.4 163 111-291 107-312 (369)
72 COG1643 HrpA HrpA-like helicas 98.1 4.3E-05 1.1E-09 56.0 10.5 134 112-254 66-216 (845)
73 TIGR00750 lao LAO/AO transport 98.1 1.9E-05 4.7E-10 58.6 8.5 143 108-269 35-195 (333)
74 CHL00175 minD septum-site dete 98.1 7.7E-05 2E-09 54.3 11.5 163 112-290 14-212 (279)
75 cd01983 Fer4_NifH The Fer4_Nif 98.1 3.9E-06 1E-10 63.3 4.7 50 113-210 1-50 (99)
76 pfam00009 GTP_EFTU Elongation 98.1 5.2E-05 1.3E-09 55.5 10.3 155 112-300 4-177 (185)
77 pfam03029 ATP_bind_1 Conserved 98.1 1.9E-05 4.8E-10 58.5 8.0 137 116-270 1-168 (234)
78 PRK01077 cobyrinic acid a,c-di 98.1 0.00012 3.1E-09 52.9 11.8 163 113-299 5-185 (451)
79 cd04163 Era Era subfamily. Er 98.1 0.00016 4.1E-09 52.1 12.4 147 113-300 5-162 (168)
80 PRK09401 reverse gyrase; Revie 98.1 1.7E-05 4.4E-10 58.8 7.5 57 113-169 95-152 (1176)
81 PRK13230 nitrogenase reductase 98.1 6.5E-05 1.6E-09 54.8 10.4 38 113-150 3-40 (292)
82 PHA02519 plasmid partition pro 98.1 9.2E-06 2.4E-10 60.7 5.8 42 108-149 103-146 (387)
83 COG1341 Predicted GTPase or GT 98.0 3.9E-05 1E-09 56.3 8.8 120 108-239 70-210 (398)
84 PRK03003 engA GTP-binding prot 98.0 0.00026 6.5E-09 50.6 12.7 171 86-299 188-374 (474)
85 PRK10463 hydrogenase nickel in 98.0 5.9E-05 1.5E-09 55.1 9.3 167 109-298 102-280 (290)
86 cd01878 HflX HflX subfamily. 98.0 0.0004 1E-08 49.3 13.5 147 113-300 43-198 (204)
87 KOG0922 consensus 98.0 7.9E-05 2E-09 54.2 9.7 159 112-282 67-252 (674)
88 KOG1805 consensus 98.0 3.7E-05 9.4E-10 56.5 7.4 52 114-168 688-739 (1100)
89 COG3640 CooC CO dehydrogenase 98.0 0.00014 3.5E-09 52.5 10.3 170 113-311 2-229 (255)
90 TIGR03348 VI_IcmF type VI secr 97.9 3.8E-05 9.6E-10 56.5 6.9 133 113-278 113-265 (1169)
91 PRK06067 flagellar accessory p 97.9 5.9E-05 1.5E-09 55.1 7.6 94 110-203 31-137 (241)
92 pfam06745 KaiC KaiC. This fami 97.9 0.00052 1.3E-08 48.5 12.5 56 110-169 18-74 (231)
93 pfam06414 Zeta_toxin Zeta toxi 97.9 7.3E-05 1.9E-09 54.4 8.0 103 107-216 8-113 (191)
94 COG0455 flhG Antiactivator of 97.9 0.00055 1.4E-08 48.3 12.3 164 111-291 2-204 (262)
95 COG0467 RAD55 RecA-superfamily 97.9 0.00017 4.3E-09 51.9 9.7 147 111-267 23-194 (260)
96 cd00009 AAA The AAA+ (ATPases 97.9 9.5E-05 2.4E-09 53.6 8.4 79 110-205 18-96 (151)
97 cd01394 radB RadB. The archaea 97.9 0.00042 1.1E-08 49.1 11.2 93 111-203 19-113 (218)
98 PRK12374 putative dithiobiotin 97.8 0.0028 7.1E-08 43.3 15.3 180 114-309 5-214 (231)
99 COG0489 Mrp ATPases involved i 97.8 0.00044 1.1E-08 49.0 11.2 51 110-160 56-107 (265)
100 PRK06526 transposase; Provisio 97.8 0.00019 4.9E-09 51.5 9.3 153 45-227 34-190 (254)
101 cd01120 RecA-like_NTPases RecA 97.8 0.00017 4.5E-09 51.8 8.9 95 113-207 1-99 (165)
102 PRK13236 nitrogenase reductase 97.8 0.0013 3.3E-08 45.7 13.1 168 109-288 4-212 (295)
103 PRK09183 transposase/IS protei 97.8 0.00029 7.5E-09 50.2 9.8 154 45-227 37-194 (258)
104 COG2805 PilT Tfp pilus assembl 97.8 0.00016 4.1E-09 52.0 8.4 94 112-224 126-219 (353)
105 PRK04220 2-phosphoglycerate ki 97.8 0.00018 4.5E-09 51.7 8.7 237 48-318 21-300 (306)
106 pfam03796 DnaB_C DnaB-like hel 97.8 0.00047 1.2E-08 48.8 10.8 90 111-204 19-112 (186)
107 PRK05291 trmE tRNA modificatio 97.8 0.00025 6.5E-09 50.6 9.3 162 87-302 195-362 (445)
108 PRK09302 circadian clock prote 97.8 0.00019 5E-09 51.5 8.5 90 110-203 265-366 (501)
109 PRK13234 nifH nitrogenase redu 97.8 0.0025 6.4E-08 43.6 14.0 164 111-289 4-211 (293)
110 TIGR02397 dnaX_nterm DNA polym 97.8 0.00014 3.5E-09 52.5 7.5 96 109-241 34-154 (363)
111 PRK08533 flagellar accessory p 97.8 0.00037 9.6E-09 49.5 9.7 95 110-204 23-128 (230)
112 TIGR01967 DEAH_box_HrpA ATP-de 97.8 0.0025 6.5E-08 43.6 13.9 205 15-255 3-235 (1320)
113 cd01122 GP4d_helicase GP4d_hel 97.8 0.00055 1.4E-08 48.3 10.5 58 111-170 30-88 (271)
114 TIGR03346 chaperone_ClpB ATP-d 97.8 0.0031 7.9E-08 43.0 14.3 129 107-246 590-722 (852)
115 cd01895 EngA2 EngA2 subfamily. 97.7 0.00061 1.5E-08 48.0 10.4 151 111-300 2-168 (174)
116 cd01131 PilT Pilus retraction 97.7 0.0001 2.7E-09 53.4 6.4 79 112-200 2-81 (198)
117 cd02034 CooC The accessory pro 97.7 0.00011 2.8E-09 53.2 6.4 80 114-202 2-95 (116)
118 PRK11664 ATP-dependent RNA hel 97.7 0.00047 1.2E-08 48.8 9.6 131 113-257 22-169 (812)
119 TIGR03574 selen_PSTK L-seryl-t 97.7 5.9E-05 1.5E-09 55.1 4.9 92 113-221 1-92 (249)
120 cd04164 trmE TrmE (MnmE, ThdF, 97.7 0.00091 2.3E-08 46.7 11.0 144 114-300 4-150 (157)
121 PRK07133 DNA polymerase III su 97.7 0.00017 4.4E-09 51.8 7.1 116 109-243 38-158 (718)
122 COG1110 Reverse gyrase [DNA re 97.7 0.00019 4.9E-09 51.5 7.2 177 113-291 99-344 (1187)
123 TIGR01054 rgy reverse gyrase; 97.7 0.00011 2.8E-09 53.2 5.8 90 113-203 101-195 (1843)
124 PRK10875 recD exonuclease V su 97.7 0.00077 2E-08 47.2 10.2 114 112-239 163-296 (607)
125 cd02028 UMPK_like Uridine mono 97.7 4.8E-05 1.2E-09 55.7 4.0 40 113-152 1-40 (179)
126 COG1618 Predicted nucleotide k 97.7 5.6E-05 1.4E-09 55.2 4.2 102 111-214 5-121 (179)
127 COG4240 Predicted kinase [Gene 97.7 0.00078 2E-08 47.2 10.0 57 107-163 46-103 (300)
128 PRK00784 cobyric acid synthase 97.7 0.0024 6E-08 43.8 12.5 179 113-299 5-232 (492)
129 PRK04328 hypothetical protein; 97.7 0.0015 3.8E-08 45.3 11.4 56 110-169 23-78 (250)
130 PRK05541 adenylylsulfate kinas 97.6 5.3E-05 1.4E-09 55.4 3.8 46 107-152 3-48 (176)
131 COG2804 PulE Type II secretory 97.6 8E-05 2.1E-09 54.1 4.6 77 111-201 258-335 (500)
132 pfam01591 6PF2K 6-phosphofruct 97.6 0.0088 2.2E-07 39.9 15.0 180 107-313 9-219 (223)
133 PRK06647 DNA polymerase III su 97.6 0.00084 2.1E-08 47.0 9.7 120 109-244 36-161 (560)
134 TIGR03015 pepcterm_ATPase puta 97.6 0.00063 1.6E-08 47.9 8.9 143 110-269 42-195 (269)
135 PRK00093 engA GTP-binding prot 97.6 0.0019 5E-08 44.4 11.4 171 86-300 152-338 (438)
136 PRK05896 DNA polymerase III su 97.6 0.0012 3E-08 46.0 10.3 121 108-245 35-162 (613)
137 PRK07270 DNA polymerase III su 97.6 0.0081 2.1E-07 40.1 14.4 106 109-244 35-160 (557)
138 PRK08181 transposase; Validate 97.6 0.00079 2E-08 47.2 9.0 152 46-227 42-198 (269)
139 cd00984 DnaB_C DnaB helicase C 97.6 0.0016 4E-08 45.1 10.4 91 111-204 13-106 (242)
140 cd01124 KaiC KaiC is a circadi 97.6 0.00048 1.2E-08 48.7 7.7 52 114-169 2-53 (187)
141 PRK11537 putative GTP-binding 97.5 0.0089 2.3E-07 39.8 13.9 174 112-294 5-190 (317)
142 COG3523 IcmF Type VI protein s 97.5 0.00061 1.5E-08 48.0 7.9 123 114-271 128-271 (1188)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 97.5 0.00095 2.4E-08 46.6 8.9 142 113-300 2-159 (168)
144 PRK10787 DNA-binding ATP-depen 97.5 0.012 3.1E-07 38.9 17.7 168 44-215 249-485 (784)
145 TIGR01968 minD_bact septum sit 97.5 8.8E-05 2.3E-09 53.9 3.4 45 117-168 8-52 (272)
146 pfam01583 APS_kinase Adenylyls 97.5 0.00011 2.7E-09 53.3 3.7 43 110-152 1-43 (157)
147 cd00881 GTP_translation_factor 97.5 0.0047 1.2E-07 41.7 12.1 148 114-298 2-178 (189)
148 PRK06674 DNA polymerase III su 97.5 0.0039 9.8E-08 42.3 11.7 28 109-136 36-63 (563)
149 PRK13896 cobyrinic acid a,c-di 97.5 0.0041 1E-07 42.2 11.8 171 114-313 4-187 (432)
150 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0047 1.2E-07 41.7 12.0 127 108-246 592-723 (852)
151 pfam08433 KTI12 Chromatin asso 97.5 0.00022 5.6E-09 51.1 5.0 74 114-201 2-76 (266)
152 PRK08451 DNA polymerase III su 97.5 0.00091 2.3E-08 46.8 8.1 118 108-242 33-156 (523)
153 PRK06696 uridine kinase; Valid 97.4 0.00016 4.1E-09 52.0 4.0 47 108-154 23-69 (227)
154 pfam03266 DUF265 Protein of un 97.4 0.00036 9.1E-09 49.6 5.8 116 114-238 2-133 (168)
155 smart00487 DEXDc DEAD-like hel 97.4 0.003 7.7E-08 43.1 10.6 132 112-253 25-182 (201)
156 cd04165 GTPBP1_like GTPBP1-lik 97.4 0.0013 3.4E-08 45.6 8.7 134 114-272 2-154 (224)
157 cd03112 CobW_like The function 97.4 0.0013 3.2E-08 45.8 8.6 146 113-267 2-157 (158)
158 pfam00154 RecA recA bacterial 97.4 0.0025 6.4E-08 43.6 10.1 95 112-214 53-151 (322)
159 KOG1532 consensus 97.4 0.00049 1.3E-08 48.6 6.4 43 107-149 15-57 (366)
160 CHL00095 clpC Clp protease ATP 97.4 0.0035 8.8E-08 42.7 10.7 128 107-246 534-666 (823)
161 PRK04301 radA DNA repair and r 97.4 0.012 3E-07 38.9 13.4 144 55-203 45-209 (318)
162 PRK03846 adenylylsulfate kinas 97.4 0.00015 3.9E-09 52.2 3.7 46 108-153 21-66 (198)
163 PRK07940 DNA polymerase III su 97.4 0.004 1E-07 42.2 10.9 162 80-256 9-174 (395)
164 cd00880 Era_like Era (E. coli 97.4 0.004 1E-07 42.2 10.9 145 116-300 1-157 (163)
165 cd01894 EngA1 EngA1 subfamily. 97.4 0.0037 9.5E-08 42.4 10.7 145 115-299 1-150 (157)
166 PRK05342 clpX ATP-dependent pr 97.4 0.0012 3.1E-08 45.9 8.2 69 111-200 109-181 (411)
167 KOG0923 consensus 97.4 0.00076 1.9E-08 47.3 7.1 187 111-319 280-506 (902)
168 PRK07003 DNA polymerase III su 97.4 0.0098 2.5E-07 39.5 12.8 27 110-136 37-63 (816)
169 PRK12402 replication factor C 97.4 0.00044 1.1E-08 49.0 5.9 98 109-210 35-142 (337)
170 TIGR02928 TIGR02928 orc1/cdc6 97.4 0.0039 1E-07 42.3 10.7 112 82-205 23-148 (383)
171 TIGR00073 hypB hydrogenase acc 97.4 0.00045 1.2E-08 48.9 5.8 144 108-274 31-182 (225)
172 PRK10436 hypothetical protein; 97.4 0.00021 5.4E-09 51.2 4.1 79 110-202 214-293 (461)
173 PRK10751 molybdopterin-guanine 97.4 0.00011 2.9E-09 53.1 2.7 37 113-149 4-40 (170)
174 TIGR02533 type_II_gspE general 97.4 0.00015 3.7E-09 52.3 3.2 74 111-200 245-321 (495)
175 PRK00093 engA GTP-binding prot 97.4 0.0099 2.5E-07 39.5 12.5 146 113-299 3-155 (438)
176 COG0542 clpA ATP-binding subun 97.4 0.0071 1.8E-07 40.5 11.7 143 80-248 495-650 (786)
177 TIGR00763 lon ATP-dependent pr 97.4 0.0076 1.9E-07 40.3 11.8 78 108-200 446-524 (941)
178 pfam00437 GSPII_E Type II/IV s 97.4 6.9E-05 1.8E-09 54.6 1.4 34 112-145 140-173 (283)
179 PRK05480 uridine kinase; Provi 97.3 0.00024 6.1E-09 50.8 4.1 41 108-150 3-43 (209)
180 cd03116 MobB Molybdenum is an 97.3 0.0002 5.1E-09 51.4 3.6 71 111-206 1-71 (159)
181 pfam01695 IstB IstB-like ATP b 97.3 0.0029 7.4E-08 43.2 9.4 96 111-230 47-142 (178)
182 cd01891 TypA_BipA TypA (tyrosi 97.3 0.017 4.4E-07 37.8 13.1 152 113-301 4-176 (194)
183 PRK06645 DNA polymerase III su 97.3 0.0012 3E-08 46.0 7.1 119 109-242 41-167 (507)
184 PRK04195 replication factor C 97.3 0.0061 1.6E-07 40.9 10.7 84 112-219 41-127 (403)
185 PRK13869 plasmid-partitioning 97.3 0.00022 5.7E-09 51.0 3.3 43 109-151 119-162 (405)
186 PRK06872 DNA polymerase III su 97.3 0.012 3E-07 39.0 12.2 28 109-136 36-63 (696)
187 PRK00313 lpxK tetraacyldisacch 97.3 0.0021 5.3E-08 44.3 8.3 78 117-202 59-153 (332)
188 PRK11448 hsdR type I restricti 97.3 0.00027 6.9E-09 50.5 3.7 135 112-254 437-606 (1126)
189 PRK12337 2-phosphoglycerate ki 97.3 0.0021 5.5E-08 44.1 8.3 100 49-152 192-299 (492)
190 TIGR03594 GTPase_EngA ribosome 97.3 0.0097 2.5E-07 39.5 11.6 175 85-300 148-337 (429)
191 PRK11034 clpA ATP-dependent Cl 97.3 0.0021 5.4E-08 44.2 8.2 80 108-208 484-572 (758)
192 PRK09112 DNA polymerase III su 97.3 0.0017 4.5E-08 44.8 7.7 132 108-250 42-189 (352)
193 PRK00889 adenylylsulfate kinas 97.3 0.00031 8E-09 50.0 3.9 45 109-153 2-46 (175)
194 TIGR03453 partition_RepA plasm 97.3 0.00025 6.3E-09 50.7 3.3 43 108-150 101-144 (387)
195 PRK08691 DNA polymerase III su 97.3 0.02 5.1E-07 37.3 13.1 27 110-136 37-63 (704)
196 KOG2878 consensus 97.2 0.0014 3.6E-08 45.4 7.0 85 106-190 26-115 (282)
197 COG2074 2-phosphoglycerate kin 97.2 0.0021 5.3E-08 44.2 7.9 99 49-151 20-125 (299)
198 PRK10865 protein disaggregatio 97.2 0.0013 3.3E-08 45.7 6.8 130 107-248 593-727 (857)
199 PRK07952 DNA replication prote 97.2 0.0024 6E-08 43.8 8.1 93 110-224 95-187 (242)
200 PRK05648 DNA polymerase III su 97.2 0.0019 4.7E-08 44.6 7.5 27 110-136 37-63 (705)
201 PRK06835 DNA replication prote 97.2 0.0041 1E-07 42.2 9.3 85 112-215 184-268 (330)
202 PRK08233 hypothetical protein; 97.2 0.002 5E-08 44.4 7.6 84 109-202 1-86 (182)
203 PRK05563 DNA polymerase III su 97.2 0.0074 1.9E-07 40.4 10.5 28 109-136 36-63 (541)
204 PRK00454 engB GTPase EngB; Rev 97.2 0.025 6.3E-07 36.7 13.1 152 105-302 19-191 (196)
205 KOG0925 consensus 97.2 0.0017 4.3E-08 44.9 7.1 177 112-299 63-270 (699)
206 PRK09270 frcK putative fructos 97.2 0.00049 1.2E-08 48.7 4.3 43 108-150 31-75 (230)
207 PRK03003 engA GTP-binding prot 97.2 0.0095 2.4E-07 39.6 10.9 152 107-299 34-191 (474)
208 cd03109 DTBS Dethiobiotin synt 97.2 0.016 4E-07 38.1 12.0 116 119-287 7-130 (134)
209 cd01876 YihA_EngB The YihA (En 97.2 0.008 2.1E-07 40.1 10.5 148 114-301 2-165 (170)
210 cd01121 Sms Sms (bacterial rad 97.2 0.0037 9.3E-08 42.5 8.7 88 111-206 82-171 (372)
211 PRK08770 DNA polymerase III su 97.2 0.003 7.7E-08 43.1 8.3 28 109-136 36-63 (663)
212 cd02027 APSK Adenosine 5'-phos 97.2 0.00034 8.6E-09 49.8 3.4 40 113-152 1-40 (149)
213 COG0470 HolB ATPase involved i 97.2 0.0035 9E-08 42.6 8.6 114 109-251 22-158 (325)
214 PRK12323 DNA polymerase III su 97.2 0.023 6E-07 36.9 12.8 28 109-136 36-63 (721)
215 pfam02606 LpxK Tetraacyldisacc 97.2 0.0034 8.7E-08 42.7 8.5 78 117-202 43-136 (318)
216 PRK13695 putative NTPase; Prov 97.2 0.00067 1.7E-08 47.7 4.7 101 111-223 3-127 (174)
217 cd01898 Obg Obg subfamily. Th 97.2 0.004 1E-07 42.3 8.7 143 114-300 3-164 (170)
218 PRK00440 rfc replication facto 97.2 0.0034 8.8E-08 42.7 8.3 29 109-138 36-64 (318)
219 cd02023 UMPK Uridine monophosp 97.2 0.00046 1.2E-08 48.8 3.8 36 113-150 1-36 (198)
220 pfam08423 Rad51 Rad51. Rad51 i 97.1 0.0074 1.9E-07 40.4 9.9 127 57-203 6-148 (261)
221 PRK00652 lpxK tetraacyldisacch 97.1 0.0036 9.2E-08 42.5 8.3 78 117-202 57-150 (334)
222 TIGR02639 ClpA ATP-dependent C 97.1 0.00045 1.1E-08 48.9 3.6 132 3-135 371-551 (774)
223 cd01129 PulE-GspE PulE/GspE Th 97.1 0.00056 1.4E-08 48.2 4.0 147 111-294 80-226 (264)
224 PRK09111 DNA polymerase III su 97.1 0.0035 9E-08 42.6 8.1 119 109-242 43-170 (600)
225 PRK08853 DNA polymerase III su 97.1 0.02 5E-07 37.4 11.9 27 110-136 37-63 (717)
226 COG0466 Lon ATP-dependent Lon 97.1 0.032 8.3E-07 35.9 14.9 197 15-215 216-487 (782)
227 cd04160 Arfrp1 Arfrp1 subfamil 97.1 0.0015 3.8E-08 45.3 6.1 139 114-298 2-160 (167)
228 COG1072 CoaA Panthothenate kin 97.1 0.0025 6.3E-08 43.7 7.2 47 106-152 77-125 (283)
229 PRK07471 DNA polymerase III su 97.1 0.0034 8.6E-08 42.8 7.8 134 108-251 36-188 (363)
230 cd00983 recA RecA is a bacter 97.1 0.0029 7.4E-08 43.2 7.5 92 112-211 56-151 (325)
231 PRK07994 DNA polymerase III su 97.1 0.027 6.9E-07 36.4 12.4 27 110-136 37-63 (643)
232 cd04170 EF-G_bact Elongation f 97.1 0.0018 4.7E-08 44.6 6.3 142 114-288 2-150 (268)
233 pfam02421 FeoB_N Ferrous iron 97.1 0.0032 8.1E-08 43.0 7.5 147 113-300 1-153 (188)
234 PRK06305 DNA polymerase III su 97.1 0.00086 2.2E-08 46.9 4.6 118 109-241 37-159 (462)
235 TIGR02173 cyt_kin_arch cytidyl 97.1 0.00091 2.3E-08 46.7 4.7 72 113-198 2-77 (173)
236 cd03216 ABC_Carb_Monos_I This 97.1 0.0029 7.4E-08 43.2 7.3 102 110-222 25-128 (163)
237 COG0563 Adk Adenylate kinase a 97.1 0.0021 5.3E-08 44.2 6.5 93 113-213 2-97 (178)
238 cd04155 Arl3 Arl3 subfamily. 97.1 0.0013 3.2E-08 45.7 5.3 138 108-297 11-165 (173)
239 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.1 0.005 1.3E-07 41.5 8.4 138 108-297 12-166 (174)
240 cd02021 GntK Gluconate kinase 97.1 0.0019 4.9E-08 44.5 6.2 81 113-204 1-83 (150)
241 pfam05970 DUF889 PIF1 helicase 97.0 0.0041 1E-07 42.2 7.8 117 118-239 1-121 (418)
242 PRK01906 tetraacyldisaccharide 97.0 0.0054 1.4E-07 41.3 8.3 84 117-201 64-175 (339)
243 COG0523 Putative GTPases (G3E 97.0 0.0048 1.2E-07 41.7 7.9 168 113-294 3-187 (323)
244 cd04171 SelB SelB subfamily. 97.0 0.0021 5.2E-08 44.3 6.0 143 113-300 2-159 (164)
245 pfam03205 MobB Molybdopterin g 97.0 0.00089 2.3E-08 46.8 4.1 37 113-149 2-39 (122)
246 cd01393 recA_like RecA is a b 97.0 0.011 2.7E-07 39.2 9.6 92 112-203 20-124 (226)
247 CHL00181 cbbX CbbX; Provisiona 97.0 0.0062 1.6E-07 40.9 8.4 29 112-140 60-88 (287)
248 PRK11823 DNA repair protein Ra 97.0 0.0071 1.8E-07 40.5 8.6 86 111-205 90-177 (454)
249 PRK07667 uridine kinase; Provi 97.0 0.0011 2.8E-08 46.1 4.5 42 109-150 12-53 (190)
250 pfam10662 PduV-EutP Ethanolami 97.0 0.0098 2.5E-07 39.5 9.3 127 114-300 4-139 (143)
251 cd02025 PanK Pantothenate kina 97.0 0.0015 3.9E-08 45.2 5.2 38 113-150 1-40 (220)
252 PRK07764 DNA polymerase III su 97.0 0.017 4.5E-07 37.7 10.5 118 109-242 35-159 (775)
253 smart00178 SAR Sar1p-like memb 97.0 0.0066 1.7E-07 40.7 8.4 134 108-315 14-147 (184)
254 PRK09302 circadian clock prote 97.0 0.041 1E-06 35.1 12.4 109 110-223 23-157 (501)
255 TIGR03594 GTPase_EngA ribosome 96.9 0.016 4E-07 38.1 10.1 146 113-299 1-152 (429)
256 PTZ00301 uridine kinase; Provi 96.9 0.0012 3E-08 45.9 4.3 42 110-151 2-45 (210)
257 cd04169 RF3 RF3 subfamily. Pe 96.9 0.0023 5.8E-08 44.0 5.7 141 111-286 2-155 (267)
258 PRK08116 hypothetical protein; 96.9 0.0068 1.7E-07 40.6 8.2 92 113-225 110-201 (262)
259 cd01879 FeoB Ferrous iron tran 96.9 0.002 5.2E-08 44.3 5.4 143 116-300 1-150 (158)
260 COG2403 Predicted GTPase [Gene 96.9 0.01 2.6E-07 39.4 8.9 137 108-272 124-284 (449)
261 cd01883 EF1_alpha Eukaryotic e 96.9 0.0028 7.3E-08 43.3 6.1 125 114-269 2-150 (219)
262 PRK10037 cell division protein 96.9 0.0012 3E-08 46.0 4.1 151 112-282 2-190 (250)
263 COG1797 CobB Cobyrinic acid a, 96.9 0.014 3.5E-07 38.5 9.5 164 114-300 3-184 (451)
264 COG1066 Sms Predicted ATP-depe 96.9 0.018 4.5E-07 37.7 10.0 90 111-209 93-184 (456)
265 PRK08769 DNA polymerase III su 96.9 0.0037 9.3E-08 42.5 6.4 127 108-250 23-161 (319)
266 pfam00485 PRK Phosphoribulokin 96.9 0.00066 1.7E-08 47.7 2.6 36 113-148 1-36 (196)
267 PRK05564 DNA polymerase III su 96.9 0.0041 1E-07 42.2 6.6 114 108-250 23-141 (313)
268 COG1763 MobB Molybdopterin-gua 96.9 0.0012 2.9E-08 46.0 3.8 153 111-310 2-159 (161)
269 PRK00411 cdc6 cell division co 96.9 0.0098 2.5E-07 39.5 8.6 105 109-217 53-164 (394)
270 PTZ00141 elongation factor 1 a 96.9 0.02 5.1E-07 37.3 10.1 135 108-270 3-159 (443)
271 PRK12377 putative replication 96.9 0.006 1.5E-07 41.0 7.4 94 107-223 97-190 (248)
272 COG0486 ThdF Predicted GTPase 96.9 0.0017 4.3E-08 44.9 4.6 174 87-308 196-377 (454)
273 cd00879 Sar1 Sar1 subfamily. 96.9 0.0028 7E-08 43.4 5.7 98 107-255 15-112 (190)
274 cd04105 SR_beta Signal recogni 96.9 0.0049 1.3E-07 41.6 6.9 98 113-256 2-100 (203)
275 cd04154 Arl2 Arl2 subfamily. 96.9 0.0053 1.3E-07 41.4 7.1 139 108-298 11-166 (173)
276 TIGR03598 GTPase_YsxC ribosome 96.9 0.053 1.4E-06 34.4 14.4 149 105-296 13-179 (179)
277 PRK09354 recA recombinase A; P 96.9 0.0062 1.6E-07 40.9 7.4 92 112-211 61-156 (350)
278 cd01881 Obg_like The Obg-like 96.9 0.022 5.6E-07 37.0 10.2 98 193-299 43-169 (176)
279 PRK09518 bifunctional cytidyla 96.8 0.055 1.4E-06 34.3 12.3 146 113-299 281-432 (714)
280 KOG1051 consensus 96.8 0.024 6E-07 36.8 10.3 121 109-246 589-715 (898)
281 COG2894 MinD Septum formation 96.8 0.0012 3.2E-08 45.8 3.6 180 113-314 5-249 (272)
282 PRK09518 bifunctional cytidyla 96.8 0.035 8.9E-07 35.6 10.9 154 109-301 450-617 (714)
283 KOG2004 consensus 96.8 0.058 1.5E-06 34.1 12.9 100 107-206 434-565 (906)
284 pfam00025 Arf ADP-ribosylation 96.8 0.0028 7.1E-08 43.4 5.2 139 108-298 11-166 (174)
285 cd03238 ABC_UvrA The excision 96.8 0.0063 1.6E-07 40.9 7.0 53 111-163 21-73 (176)
286 cd03111 CpaE_like This protein 96.8 0.01 2.6E-07 39.3 8.1 38 113-150 1-40 (106)
287 cd04168 TetM_like Tet(M)-like 96.8 0.0075 1.9E-07 40.3 7.3 142 114-293 2-155 (237)
288 pfam04851 ResIII Type III rest 96.8 0.0047 1.2E-07 41.8 6.2 59 114-208 21-79 (103)
289 TIGR00176 mobB molybdopterin-g 96.7 0.0013 3.4E-08 45.6 3.3 119 113-271 1-123 (165)
290 cd04150 Arf1_5_like Arf1-Arf5- 96.7 0.0035 8.8E-08 42.7 5.4 134 113-297 2-151 (159)
291 TIGR02903 spore_lon_C ATP-depe 96.7 0.013 3.4E-07 38.5 8.4 82 111-205 176-278 (616)
292 pfam09439 SRPRB Signal recogni 96.7 0.0063 1.6E-07 40.9 6.7 98 113-256 5-103 (181)
293 PRK00698 tmk thymidylate kinas 96.7 0.0054 1.4E-07 41.3 6.3 47 113-162 5-53 (204)
294 KOG0926 consensus 96.7 0.014 3.6E-07 38.4 8.3 129 113-242 273-425 (1172)
295 cd01890 LepA LepA subfamily. 96.7 0.0052 1.3E-07 41.5 6.0 154 114-299 3-169 (179)
296 TIGR00101 ureG urease accessor 96.7 0.027 6.8E-07 36.5 9.5 159 114-291 4-178 (199)
297 PRK13643 cbiO cobalt transport 96.7 0.0026 6.6E-08 43.6 4.3 56 112-167 33-88 (288)
298 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.015 3.9E-07 38.1 8.2 135 112-285 39-178 (226)
299 cd01886 EF-G Elongation factor 96.6 0.0077 2E-07 40.2 6.6 139 114-289 2-151 (270)
300 cd04149 Arf6 Arf6 subfamily. 96.6 0.011 2.8E-07 39.2 7.3 137 108-296 6-159 (168)
301 TIGR00345 arsA arsenite-activa 96.6 0.0019 4.8E-08 44.5 3.4 35 115-149 1-37 (330)
302 TIGR01188 drrA daunorubicin re 96.6 0.001 2.6E-08 46.4 2.0 45 110-154 20-64 (343)
303 cd00046 DEXDc DEAD-like helica 96.6 0.017 4.4E-07 37.8 8.3 51 114-166 3-55 (144)
304 cd00878 Arf_Arl Arf (ADP-ribos 96.6 0.015 3.9E-07 38.1 7.9 133 114-298 2-151 (158)
305 PRK05917 DNA polymerase III su 96.6 0.016 4E-07 38.1 7.9 128 108-258 16-151 (290)
306 PRK12317 elongation factor 1-a 96.6 0.01 2.6E-07 39.4 6.9 134 108-269 3-153 (426)
307 PRK13646 cbiO cobalt transport 96.6 0.0036 9.2E-08 42.6 4.5 57 111-167 33-89 (286)
308 PTZ00133 ADP-ribosylation fact 96.6 0.0081 2.1E-07 40.1 6.3 139 108-298 14-169 (182)
309 cd04158 ARD1 ARD1 subfamily. 96.6 0.0086 2.2E-07 39.9 6.4 147 114-316 2-166 (169)
310 pfam05621 TniB Bacterial TniB 96.6 0.016 4E-07 38.0 7.8 110 106-222 56-179 (302)
311 PRK05595 replicative DNA helic 96.6 0.085 2.2E-06 32.9 19.1 118 111-228 201-349 (444)
312 PRK13766 Hef nuclease; Provisi 96.6 0.083 2.1E-06 33.0 11.4 21 271-291 646-666 (764)
313 PRK01184 hypothetical protein; 96.6 0.021 5.3E-07 37.2 8.3 104 112-241 2-113 (183)
314 cd01428 ADK Adenylate kinase ( 96.5 0.007 1.8E-07 40.5 5.8 95 114-215 2-98 (194)
315 PRK08058 DNA polymerase III su 96.5 0.013 3.4E-07 38.5 7.3 130 108-250 25-158 (329)
316 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.045 1.2E-06 34.8 10.0 53 111-166 19-78 (235)
317 PRK00089 era GTP-binding prote 96.5 0.03 7.7E-07 36.1 9.1 152 108-299 5-165 (296)
318 pfam00071 Ras Ras family. Incl 96.5 0.024 6.1E-07 36.8 8.5 138 114-298 2-152 (162)
319 cd01897 NOG NOG1 is a nucleola 96.5 0.079 2E-06 33.1 11.1 147 113-299 2-160 (168)
320 COG1111 MPH1 ERCC4-like helica 96.5 0.073 1.9E-06 33.4 10.9 160 114-290 32-214 (542)
321 COG0572 Udk Uridine kinase [Nu 96.5 0.0027 6.9E-08 43.4 3.6 63 109-173 6-94 (218)
322 PRK05439 pantothenate kinase; 96.5 0.018 4.5E-07 37.7 7.7 46 106-151 81-128 (312)
323 pfam01637 Arch_ATPase Archaeal 96.5 0.054 1.4E-06 34.3 10.2 109 109-219 18-138 (223)
324 PRK13641 cbiO cobalt transport 96.5 0.0033 8.3E-08 42.9 3.9 58 111-168 33-90 (286)
325 pfam00004 AAA ATPase family as 96.5 0.0072 1.8E-07 40.4 5.6 32 114-148 1-32 (131)
326 cd01884 EF_Tu EF-Tu subfamily. 96.5 0.0061 1.5E-07 41.0 5.2 152 114-300 5-176 (195)
327 PRK04040 adenylate kinase; Pro 96.5 0.0074 1.9E-07 40.4 5.6 171 111-312 2-185 (189)
328 cd02033 BchX Chlorophyllide re 96.5 0.0038 9.7E-08 42.4 4.1 161 107-288 27-236 (329)
329 PRK05537 bifunctional sulfate 96.5 0.0099 2.5E-07 39.5 6.2 47 108-154 389-436 (568)
330 cd04162 Arl9_Arfrp2_like Arl9/ 96.5 0.022 5.6E-07 37.0 7.9 126 114-317 2-130 (164)
331 TIGR03600 phage_DnaB phage rep 96.5 0.098 2.5E-06 32.5 12.2 89 111-205 194-288 (421)
332 PRK06761 hypothetical protein; 96.4 0.0048 1.2E-07 41.7 4.5 41 113-153 4-51 (281)
333 PRK07413 hypothetical protein; 96.4 0.053 1.3E-06 34.4 9.8 175 57-238 139-344 (382)
334 TIGR01085 murE UDP-N-acetylmur 96.4 0.0046 1.2E-07 41.8 4.4 79 113-202 87-167 (494)
335 COG0468 RecA RecA/RadA recombi 96.4 0.022 5.6E-07 37.1 7.8 156 111-290 60-229 (279)
336 COG3598 RepA RecA-family ATPas 96.4 0.026 6.6E-07 36.5 8.2 90 113-202 90-203 (402)
337 PRK02362 ski2-like helicase; P 96.4 0.029 7.3E-07 36.2 8.4 123 114-250 42-189 (736)
338 cd01130 VirB11-like_ATPase Typ 96.4 0.003 7.7E-08 43.1 3.4 78 113-200 27-107 (186)
339 PRK05506 bifunctional sulfate 96.4 0.0036 9.2E-08 42.6 3.7 57 108-164 440-507 (613)
340 PRK11248 tauB taurine transpor 96.4 0.026 6.6E-07 36.5 8.0 38 111-148 27-64 (255)
341 COG0529 CysC Adenylylsulfate k 96.4 0.0042 1.1E-07 42.1 4.0 47 108-154 20-66 (197)
342 PRK05632 phosphate acetyltrans 96.4 0.11 2.7E-06 32.2 15.0 31 114-144 4-35 (702)
343 PRK13644 cbiO cobalt transport 96.4 0.0052 1.3E-07 41.5 4.3 54 111-167 28-81 (274)
344 PRK13342 recombination factor 96.4 0.011 2.9E-07 39.1 6.1 28 109-136 35-62 (417)
345 TIGR01448 recD_rel helicase, R 96.4 0.019 4.8E-07 37.5 7.1 173 111-305 365-560 (769)
346 cd01867 Rab8_Rab10_Rab13_like 96.3 0.053 1.4E-06 34.4 9.4 140 112-298 4-156 (167)
347 COG0132 BioD Dethiobiotin synt 96.3 0.11 2.9E-06 32.1 12.7 163 114-287 5-198 (223)
348 PRK13650 cbiO cobalt transport 96.3 0.0063 1.6E-07 40.8 4.6 164 111-296 30-217 (276)
349 COG1484 DnaC DNA replication p 96.3 0.038 9.8E-07 35.3 8.6 81 110-210 104-184 (254)
350 PRK13640 cbiO cobalt transport 96.3 0.0058 1.5E-07 41.1 4.4 61 111-173 34-94 (283)
351 COG2874 FlaH Predicted ATPases 96.3 0.02 5.1E-07 37.3 7.1 176 111-304 28-222 (235)
352 PRK07132 DNA polymerase III su 96.3 0.019 4.8E-07 37.5 6.9 121 108-254 17-144 (303)
353 PRK06762 hypothetical protein; 96.3 0.01 2.6E-07 39.4 5.6 90 111-217 2-91 (166)
354 PRK05201 hslU ATP-dependent pr 96.3 0.011 2.8E-07 39.2 5.7 27 109-135 48-74 (442)
355 TIGR01447 recD exodeoxyribonuc 96.3 0.0046 1.2E-07 41.8 3.7 123 111-240 242-394 (753)
356 PRK13633 cobalt transporter AT 96.3 0.013 3.2E-07 38.7 6.0 74 111-188 37-110 (281)
357 PTZ00035 Rad51; Provisional 96.3 0.12 3.1E-06 31.9 13.4 88 112-202 131-234 (350)
358 PRK13649 cbiO cobalt transport 96.3 0.0055 1.4E-07 41.3 4.1 58 111-168 33-90 (280)
359 cd03299 ABC_ModC_like Archeal 96.3 0.024 6.1E-07 36.8 7.3 182 111-315 25-234 (235)
360 COG1220 HslU ATP-dependent pro 96.3 0.012 3.1E-07 38.8 5.8 82 63-148 6-95 (444)
361 PRK08699 DNA polymerase III su 96.3 0.016 4E-07 38.1 6.3 130 108-249 18-160 (325)
362 smart00177 ARF ARF-like small 96.3 0.0051 1.3E-07 41.5 3.8 139 107-297 9-164 (175)
363 cd04123 Rab21 Rab21 subfamily. 96.3 0.033 8.5E-07 35.8 8.0 139 113-298 2-153 (162)
364 CHL00071 tufA elongation facto 96.3 0.0081 2.1E-07 40.1 4.8 130 108-270 8-142 (409)
365 pfam07724 AAA_2 AAA domain (Cd 96.3 0.018 4.6E-07 37.7 6.5 86 112-208 4-90 (168)
366 COG0125 Tmk Thymidylate kinase 96.2 0.014 3.5E-07 38.5 5.9 51 111-162 3-53 (208)
367 PRK13651 cobalt transporter AT 96.2 0.0095 2.4E-07 39.6 5.0 58 111-168 33-106 (304)
368 cd04151 Arl1 Arl1 subfamily. 96.2 0.01 2.6E-07 39.4 5.1 131 114-297 2-150 (158)
369 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.021 5.2E-07 37.3 6.7 102 111-222 25-126 (157)
370 PRK12735 elongation factor Tu; 96.2 0.023 5.8E-07 36.9 6.9 130 108-270 8-142 (396)
371 KOG2825 consensus 96.2 0.0041 1.1E-07 42.1 3.1 41 109-149 16-57 (323)
372 COG1160 Predicted GTPases [Gen 96.2 0.13 3.4E-06 31.5 10.8 170 85-299 153-343 (444)
373 COG4586 ABC-type uncharacteriz 96.2 0.0027 6.9E-08 43.4 2.1 41 111-151 50-90 (325)
374 PRK05707 DNA polymerase III su 96.2 0.038 9.7E-07 35.4 7.9 131 108-251 19-155 (328)
375 PRK13634 cbiO cobalt transport 96.2 0.0062 1.6E-07 40.9 3.9 58 111-168 20-77 (276)
376 cd03267 ABC_NatA_like Similar 96.2 0.0032 8.2E-08 42.9 2.4 66 84-149 19-85 (236)
377 cd03222 ABC_RNaseL_inhibitor T 96.2 0.0076 1.9E-07 40.3 4.3 92 110-220 24-115 (177)
378 COG4152 ABC-type uncharacteriz 96.2 0.018 4.7E-07 37.6 6.2 103 112-214 29-171 (300)
379 PRK00279 adk adenylate kinase; 96.2 0.016 4.2E-07 37.9 6.0 93 114-215 3-99 (215)
380 PTZ00088 adenylate kinase 1; P 96.2 0.0027 6.8E-08 43.5 1.9 40 114-157 3-42 (225)
381 PRK13647 cbiO cobalt transport 96.2 0.0057 1.4E-07 41.2 3.6 41 111-151 31-71 (273)
382 pfam03215 Rad17 Rad17 cell cyc 96.2 0.01 2.6E-07 39.4 4.8 107 85-201 28-169 (490)
383 PRK13409 putative ATPase RIL; 96.1 0.011 2.8E-07 39.1 5.0 28 112-139 366-394 (590)
384 pfam00270 DEAD DEAD/DEAH box h 96.1 0.057 1.5E-06 34.1 8.6 51 114-165 17-69 (167)
385 PRK13537 lipooligosaccharide t 96.1 0.0069 1.8E-07 40.6 3.9 100 110-209 30-172 (304)
386 PRK07429 phosphoribulokinase; 96.1 0.0078 2E-07 40.2 4.1 110 107-218 4-164 (331)
387 cd03214 ABC_Iron-Siderophores_ 96.1 0.024 6E-07 36.8 6.6 41 111-151 25-65 (180)
388 cd00154 Rab Rab family. Rab G 96.1 0.08 2E-06 33.1 9.3 139 113-298 2-153 (159)
389 TIGR00606 rad50 rad50; InterPr 96.1 0.002 5.1E-08 44.3 1.0 20 115-134 32-51 (1328)
390 PTZ00336 elongation factor 1-a 96.1 0.033 8.3E-07 35.8 7.2 132 108-268 3-157 (449)
391 PRK05636 replicative DNA helic 96.1 0.052 1.3E-06 34.4 8.2 39 110-148 266-305 (507)
392 TIGR00450 thdF tRNA modificati 96.1 0.07 1.8E-06 33.5 8.9 179 46-269 161-346 (473)
393 TIGR00958 3a01208 antigen pept 96.1 0.0043 1.1E-07 42.0 2.7 37 112-148 560-596 (770)
394 COG5008 PilU Tfp pilus assembl 96.1 0.13 3.2E-06 31.7 10.2 142 111-273 127-283 (375)
395 TIGR02538 type_IV_pilB type IV 96.1 0.0026 6.7E-08 43.5 1.5 75 109-200 323-402 (577)
396 PRK11545 gntK gluconate kinase 96.1 0.0062 1.6E-07 40.9 3.4 42 108-154 5-46 (177)
397 PRK13642 cbiO cobalt transport 96.1 0.0047 1.2E-07 41.7 2.8 165 111-296 33-220 (277)
398 PRK00741 prfC peptide chain re 96.1 0.0074 1.9E-07 40.4 3.8 137 110-285 9-162 (526)
399 KOG1533 consensus 96.1 0.0058 1.5E-07 41.1 3.2 113 111-224 2-126 (290)
400 COG3854 SpoIIIAA ncharacterize 96.1 0.016 4E-07 38.1 5.4 83 114-205 140-230 (308)
401 PRK02496 adk adenylate kinase; 96.1 0.019 4.9E-07 37.4 5.9 95 114-215 4-100 (185)
402 COG4555 NatA ABC-type Na+ tran 96.0 0.0059 1.5E-07 41.1 3.2 95 110-215 27-121 (245)
403 PRK00091 miaA tRNA delta(2)-is 96.0 0.0062 1.6E-07 40.9 3.3 35 110-149 3-37 (304)
404 pfam04548 AIG1 AIG1 family. Ar 96.0 0.017 4.3E-07 37.9 5.5 118 114-268 3-128 (200)
405 PRK11000 maltose/maltodextrin 96.0 0.041 1E-06 35.1 7.5 26 111-136 29-54 (369)
406 PRK03992 proteasome-activating 96.0 0.067 1.7E-06 33.7 8.5 136 82-250 138-288 (390)
407 cd03257 ABC_NikE_OppD_transpor 96.0 0.013 3.3E-07 38.7 4.8 57 110-167 30-86 (228)
408 cd01672 TMPK Thymidine monopho 96.0 0.0086 2.2E-07 39.9 3.9 35 113-147 2-36 (200)
409 COG2812 DnaX DNA polymerase II 96.0 0.0037 9.5E-08 42.5 2.0 117 109-242 36-158 (515)
410 PRK13632 cbiO cobalt transport 96.0 0.0078 2E-07 40.2 3.7 53 111-167 36-88 (273)
411 cd04166 CysN_ATPS CysN_ATPS su 96.0 0.1 2.6E-06 32.4 9.3 153 114-295 2-182 (208)
412 COG1100 GTPase SAR1 and relate 96.0 0.02 5E-07 37.4 5.6 114 112-271 6-126 (219)
413 cd04161 Arl2l1_Arl13_like Arl2 96.0 0.038 9.8E-07 35.4 7.1 110 114-294 2-111 (167)
414 TIGR00390 hslU heat shock prot 96.0 0.015 3.7E-07 38.3 4.9 67 64-135 4-71 (463)
415 cd03244 ABCC_MRP_domain2 Domai 96.0 0.11 2.7E-06 32.2 9.3 39 112-150 31-69 (221)
416 PRK10851 sulfate/thiosulfate t 96.0 0.059 1.5E-06 34.0 8.0 34 111-144 28-61 (352)
417 cd03265 ABC_DrrA DrrA is the A 95.9 0.0085 2.2E-07 39.9 3.7 39 111-149 26-64 (220)
418 PRK09825 idnK D-gluconate kina 95.9 0.055 1.4E-06 34.3 7.8 39 111-154 3-41 (176)
419 PRK13652 cbiO cobalt transport 95.9 0.006 1.5E-07 41.0 2.8 41 111-151 30-70 (277)
420 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.9 0.03 7.8E-07 36.1 6.4 57 111-167 30-86 (218)
421 PRK13808 adenylate kinase; Pro 95.9 0.13 3.2E-06 31.7 9.6 143 114-311 3-152 (297)
422 PRK01172 ski2-like helicase; P 95.9 0.11 2.9E-06 32.0 9.3 123 114-250 40-187 (674)
423 PRK11247 ssuB aliphatic sulfon 95.9 0.056 1.4E-06 34.2 7.7 34 111-144 38-71 (257)
424 pfam00406 ADK Adenylate kinase 95.9 0.018 4.6E-07 37.7 5.2 93 116-215 1-95 (186)
425 TIGR02237 recomb_radB DNA repa 95.9 0.04 1E-06 35.3 6.9 88 113-203 14-113 (223)
426 pfam00931 NB-ARC NB-ARC domain 95.9 0.1 2.6E-06 32.4 8.9 89 109-203 17-110 (285)
427 cd03218 ABC_YhbG The ABC trans 95.9 0.0051 1.3E-07 41.5 2.3 48 111-158 26-73 (232)
428 cd01863 Rab18 Rab18 subfamily. 95.9 0.041 1.1E-06 35.1 6.9 139 113-298 2-153 (161)
429 cd04167 Snu114p Snu114p subfam 95.9 0.083 2.1E-06 33.0 8.4 124 113-268 2-135 (213)
430 cd04159 Arl10_like Arl10-like 95.8 0.012 3E-07 38.9 4.0 134 114-298 2-152 (159)
431 cd01882 BMS1 Bms1. Bms1 is an 95.8 0.015 3.7E-07 38.3 4.5 33 107-139 35-67 (225)
432 TIGR00382 clpX ATP-dependent C 95.8 0.0049 1.3E-07 41.6 2.1 66 112-220 153-231 (452)
433 cd00268 DEADc DEAD-box helicas 95.8 0.2 5E-06 30.4 10.4 86 114-206 39-131 (203)
434 pfam00625 Guanylate_kin Guanyl 95.8 0.019 4.8E-07 37.5 4.9 87 112-203 2-103 (182)
435 KOG0734 consensus 95.8 0.13 3.4E-06 31.5 9.2 161 86-285 310-488 (752)
436 PRK13889 conjugal transfer rel 95.8 0.14 3.6E-06 31.3 9.3 107 109-241 360-472 (992)
437 cd04128 Spg1 Spg1p. Spg1p (se 95.8 0.13 3.4E-06 31.6 9.2 149 113-312 2-167 (182)
438 PRK06090 DNA polymerase III su 95.8 0.062 1.6E-06 33.9 7.5 121 108-242 22-148 (319)
439 PRK08694 consensus 95.7 0.13 3.2E-06 31.7 8.9 115 112-226 219-366 (468)
440 cd03266 ABC_NatA_sodium_export 95.7 0.013 3.3E-07 38.7 3.8 41 111-151 31-71 (218)
441 cd03240 ABC_Rad50 The catalyti 95.7 0.0074 1.9E-07 40.4 2.6 33 101-135 14-46 (204)
442 pfam05729 NACHT NACHT domain. 95.7 0.0086 2.2E-07 39.9 2.9 26 112-137 1-26 (165)
443 PRK05858 hypothetical protein; 95.7 0.22 5.6E-06 30.0 10.9 118 80-199 136-270 (543)
444 PRK00139 murE UDP-N-acetylmura 95.7 0.034 8.7E-07 35.7 5.8 97 114-217 100-214 (481)
445 cd03296 ABC_CysA_sulfate_impor 95.7 0.074 1.9E-06 33.4 7.5 178 111-312 28-238 (239)
446 PRK13645 cbiO cobalt transport 95.6 0.017 4.2E-07 37.9 4.1 57 111-167 37-94 (289)
447 TIGR03575 selen_PSTK_euk L-ser 95.6 0.014 3.7E-07 38.3 3.8 42 114-155 2-44 (340)
448 PRK12422 chromosomal replicati 95.6 0.068 1.7E-06 33.6 7.2 87 112-221 142-230 (455)
449 PRK13635 cbiO cobalt transport 95.6 0.012 2.9E-07 39.0 3.3 38 112-149 34-71 (279)
450 PRK07560 elongation factor EF- 95.6 0.083 2.1E-06 33.0 7.7 52 257-312 577-642 (730)
451 COG1102 Cmk Cytidylate kinase 95.6 0.01 2.6E-07 39.4 3.0 79 113-206 2-83 (179)
452 PRK08939 primosomal protein Dn 95.6 0.012 3E-07 38.9 3.3 143 112-291 158-301 (306)
453 COG1131 CcmA ABC-type multidru 95.6 0.0062 1.6E-07 40.9 1.9 40 112-151 32-71 (293)
454 cd03269 ABC_putative_ATPase Th 95.6 0.0098 2.5E-07 39.5 2.9 35 110-144 25-59 (210)
455 PRK06921 hypothetical protein; 95.6 0.13 3.2E-06 31.7 8.6 69 111-202 116-185 (265)
456 PRK10895 putative ABC transpor 95.6 0.009 2.3E-07 39.8 2.7 39 111-149 29-67 (241)
457 pfam09848 DUF2075 Uncharacteri 95.6 0.043 1.1E-06 35.0 6.1 90 112-208 2-94 (348)
458 PRK07399 DNA polymerase III su 95.6 0.039 1E-06 35.3 5.9 31 108-138 23-53 (314)
459 cd03245 ABCC_bacteriocin_expor 95.6 0.12 3E-06 31.9 8.4 34 111-144 30-63 (220)
460 COG1120 FepC ABC-type cobalami 95.6 0.0084 2.1E-07 40.0 2.5 42 111-152 28-69 (258)
461 TIGR03522 GldA_ABC_ATP gliding 95.6 0.0078 2E-07 40.2 2.3 34 111-144 28-61 (301)
462 COG1160 Predicted GTPases [Gen 95.6 0.24 6.1E-06 29.8 10.9 148 112-299 4-157 (444)
463 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.6 0.11 2.7E-06 32.2 8.0 140 112-298 3-155 (166)
464 PRK13636 cbiO cobalt transport 95.6 0.018 4.5E-07 37.7 4.1 35 111-145 32-66 (285)
465 pfam00265 TK Thymidine kinase. 95.6 0.046 1.2E-06 34.8 6.2 82 113-203 3-86 (175)
466 COG1084 Predicted GTPase [Gene 95.6 0.24 6.2E-06 29.7 14.5 240 19-297 49-325 (346)
467 cd04127 Rab27A Rab27a subfamil 95.6 0.057 1.5E-06 34.1 6.6 146 113-299 6-169 (180)
468 PRK07993 DNA polymerase III su 95.6 0.079 2E-06 33.1 7.4 130 108-250 21-156 (334)
469 cd03235 ABC_Metallic_Cations A 95.6 0.0071 1.8E-07 40.5 2.0 34 111-144 25-58 (213)
470 COG1663 LpxK Tetraacyldisaccha 95.5 0.027 6.9E-07 36.4 4.9 84 111-202 46-150 (336)
471 PRK13637 cbiO cobalt transport 95.5 0.018 4.5E-07 37.7 4.0 55 111-167 33-87 (287)
472 cd03301 ABC_MalK_N The N-termi 95.5 0.082 2.1E-06 33.0 7.3 35 111-145 26-60 (213)
473 cd02024 NRK1 Nicotinamide ribo 95.5 0.011 2.7E-07 39.3 2.8 36 113-152 1-36 (187)
474 PRK00049 elongation factor Tu; 95.5 0.076 1.9E-06 33.3 7.1 129 109-270 9-143 (397)
475 cd01128 rho_factor Transcripti 95.5 0.13 3.3E-06 31.7 8.2 89 112-204 17-114 (249)
476 CHL00195 ycf46 Ycf46; Provisio 95.5 0.071 1.8E-06 33.5 6.9 28 109-136 257-284 (491)
477 pfam00205 TPP_enzyme_M Thiamin 95.5 0.053 1.3E-06 34.4 6.2 49 129-177 2-50 (138)
478 cd04113 Rab4 Rab4 subfamily. 95.4 0.17 4.3E-06 30.8 8.7 138 113-298 2-153 (161)
479 PRK13639 cbiO cobalt transport 95.4 0.017 4.3E-07 37.8 3.6 55 111-167 28-82 (275)
480 cd03268 ABC_BcrA_bacitracin_re 95.4 0.011 2.7E-07 39.2 2.6 41 111-151 26-66 (208)
481 PRK13540 cytochrome c biogenes 95.4 0.0083 2.1E-07 40.0 2.0 38 111-148 27-64 (200)
482 COG1159 Era GTPase [General fu 95.4 0.27 6.9E-06 29.4 10.1 148 111-298 6-163 (298)
483 PRK11432 fbpC ferric transport 95.4 0.083 2.1E-06 33.0 7.1 27 111-137 32-58 (351)
484 cd03264 ABC_drug_resistance_li 95.4 0.0075 1.9E-07 40.3 1.7 41 111-151 25-65 (211)
485 PRK00300 gmk guanylate kinase; 95.4 0.034 8.7E-07 35.7 5.0 88 109-204 5-110 (208)
486 PRK06964 DNA polymerase III su 95.4 0.074 1.9E-06 33.3 6.7 130 108-251 18-181 (342)
487 cd03228 ABCC_MRP_Like The MRP 95.4 0.094 2.4E-06 32.6 7.2 39 111-149 28-66 (171)
488 COG1474 CDC6 Cdc6-related prot 95.4 0.13 3.3E-06 31.7 7.9 94 109-209 40-139 (366)
489 PRK13545 tagH teichoic acids e 95.4 0.069 1.8E-06 33.5 6.5 92 111-203 50-171 (549)
490 COG1061 SSL2 DNA or RNA helica 95.4 0.053 1.3E-06 34.4 5.9 93 111-209 55-162 (442)
491 PRK06871 DNA polymerase III su 95.4 0.051 1.3E-06 34.5 5.8 129 108-249 20-153 (324)
492 PRK06904 replicative DNA helic 95.4 0.28 7.2E-06 29.3 13.0 117 111-227 221-371 (472)
493 PRK05986 cob(I)yrinic acid a,c 95.4 0.016 4.1E-07 38.0 3.2 122 111-246 23-158 (190)
494 KOG0920 consensus 95.4 0.12 2.9E-06 32.0 7.6 133 111-257 188-339 (924)
495 PRK09165 replicative DNA helic 95.3 0.29 7.3E-06 29.2 10.1 117 111-227 205-368 (484)
496 cd03298 ABC_ThiQ_thiamine_tran 95.3 0.11 2.9E-06 32.1 7.5 39 111-149 24-62 (211)
497 PRK00149 dnaA chromosomal repl 95.3 0.094 2.4E-06 32.6 7.1 88 112-222 146-237 (447)
498 KOG2749 consensus 95.3 0.023 5.9E-07 36.9 4.0 169 108-290 101-298 (415)
499 PRK08840 replicative DNA helic 95.3 0.25 6.4E-06 29.6 9.3 39 110-148 216-255 (464)
500 COG0410 LivF ABC-type branched 95.3 0.009 2.3E-07 39.8 1.9 45 110-154 28-72 (237)
No 1
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=100.00 E-value=0 Score=734.58 Aligned_cols=272 Identities=46% Similarity=0.734 Sum_probs=256.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHCCCCCCCC---------CCCCCC
Q ss_conf 78999999999999973889899999999999875127899899-99999998785201001210---------001366
Q gi|254780709|r 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPF---------NWDFSH 109 (321)
Q Consensus 40 ~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~-i~~~l~~~L~~~L~~~~~~~---------~~~~~~ 109 (321)
+++|+++||||+.||+||||++++++|++.++++...++++..+ +...+++.|.+.+.+...+. ..+..+
T Consensus 1 k~de~~~EELE~~Ll~~Dv~~~~v~~i~~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (284)
T TIGR00064 1 KDDEDFFEELEEILLESDVGLEVVEKIIEELKKELVGKKVKDEEKLKEILKEALKEILKEILDKDTLLDLEQIEELPEEK 80 (284)
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
T ss_conf 93036899899999985051899999999988754035577078999999999999874112321133443344301478
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHH
Q ss_conf 741231135444442478999999985226742677434512456889999975303532122358-6612454228999
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQ 188 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~v~~~a~~~ 188 (321)
+|+|||||||||+||||||||||++|+++||||+|+|||||||||+|||++||+|+||+++.+++| +|||||+|||+++
T Consensus 81 kp~Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~fDAi~~ 160 (284)
T TIGR00064 81 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPAAVIFDAIQA 160 (284)
T ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 97799998440886010288999999874990899827524799999999989883875540788988717899998999
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 965148759986543332115778999989987630222-3430112310233522577899987643589769996545
Q gi|254780709|r 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP-HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 (321)
Q Consensus 189 a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~-~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD 267 (321)
|+++|||+|||||||||||+.|||+||+||+||+++..+ .+|||++||+||+|||||+.||+.|++++++||+||||||
T Consensus 161 Ak~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~Gqna~~QA~~F~eav~ltGiiLTKLD 240 (284)
T TIGR00064 161 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLD 240 (284)
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98749978997347545466203999999999873210257875575422022203089999998654068858996346
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 78706999999999769889997589813255577899999872
Q gi|254780709|r 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 (321)
Q Consensus 268 ~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~ll 311 (321)
||||||++|||.+++++||+|||+||+||||.||||++|+.+||
T Consensus 241 g~AKGG~~l~i~~~l~~Pv~~~G~GE~~dDL~~Fd~~~fv~~L~ 284 (284)
T TIGR00064 241 GTAKGGIILAIAYELKLPVKFIGVGEKIDDLAPFDADWFVEALF 284 (284)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHCC
T ss_conf 88037899988998579769985488733201479789987509
No 2
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=100.00 E-value=0 Score=733.13 Aligned_cols=289 Identities=33% Similarity=0.531 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHH
Q ss_conf 99999999999998605677899----999999999997388989999999999987512789-----989999999998
Q gi|254780709|r 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSEL 91 (321)
Q Consensus 21 L~kt~~~L~~~l~~l~~~~~lde----~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i-----~~~~i~~~l~~~ 91 (321)
|+.++++|++.|+++.++.+|+| +.++|++.+||+|||++.||++|+++++++..++++ |.+.++++++++
T Consensus 1 fe~Ls~~l~~~~~~L~~~~~itE~~i~~al~EiR~ALLeADVnl~VvK~Fi~~V~ekA~G~eV~~~~~P~Qq~iKIV~eE 80 (439)
T TIGR00959 1 FESLSERLQRIFKKLSGKGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80 (439)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEHHHHHH
T ss_conf 90157899999985117777588999999999999887731576899999998888752254412678020120224689
Q ss_pred HHHHCCCC---CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHH--HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 78520100---12100013667412311354444424789999999--85226742677434512456889999975303
Q gi|254780709|r 92 IHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 (321)
Q Consensus 92 L~~~L~~~---~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~--~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~ 166 (321)
|.++|+.. ..++.+. .++|.||||||+|||||||||||||+| ++++|+||+|||||+|||||+|||+++|+++|
T Consensus 81 L~~~LG~~~~E~~~L~~~-~~~P~vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~g 159 (439)
T TIGR00959 81 LVAILGGKGRESAELKLA-EKRPTVILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQVG 159 (439)
T ss_pred HHHHCCCCCCCCCCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHCC
T ss_conf 998516667325675556-7868389973137885788999999999998638970340321034789999999767528
Q ss_pred CCCCC-CCCCCC---CHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 53212-235866---12454228999965148759986543332115778999989987630222343011231023352
Q gi|254780709|r 167 ADFVC-SEIGSD---AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 (321)
Q Consensus 167 v~~~~-~~~~~d---p~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g 242 (321)
||||. .+.+.+ |+.+|.+|+++|+.+++|+||||||||||.|+.||+||..|+++++ |+|++||+|||+|
T Consensus 160 Vpvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~~LM~EL~~iK~~~n------P~EiLlVvDaM~G 233 (439)
T TIGR00959 160 VPVFAHLGKGQSPDDPVEIARQALEEAKENGFDVVIVDTAGRLQIDEELMEELAEIKEILN------PDEILLVVDAMTG 233 (439)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHC------CCEEEECCHHCCH
T ss_conf 8711004788898877899999999999748978997267512555999999999988868------8705412201021
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 25778999876435897699965457870699999999976988999758981325557789999987286564
Q gi|254780709|r 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 (321)
Q Consensus 243 q~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd~ 316 (321)
|+|+++|++||+.+++||+||||||||||||+|||+.+.+|+||+|||+||+++||+||||+|+|+|||||||-
T Consensus 234 QdAvn~A~~F~e~lgltG~vltK~DGDaRGGAALS~~~~tg~PIKFiG~GEK~~dLe~FhP~R~A~RILGMGDv 307 (439)
T TIGR00959 234 QDAVNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIEDLEPFHPDRMASRILGMGDV 307 (439)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCH
T ss_conf 69999998636600135478854756605789999999968961888417772331246747898632365522
No 3
>PRK10416 cell division protein FtsY; Provisional
Probab=100.00 E-value=0 Score=717.25 Aligned_cols=309 Identities=40% Similarity=0.698 Sum_probs=297.9
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-HHHH
Q ss_conf 593541489999999999999999999986056778999999999999973889899999999999875127899-8999
Q gi|254780709|r 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRV 84 (321)
Q Consensus 6 ~~~e~m~~f~kLk~gL~kt~~~L~~~l~~l~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~-~~~i 84 (321)
....+.|||.||++||.||+++|.+.+.++|++++||+++|++||++||.||||++++.+|+++++++...+++. .+.+
T Consensus 190 e~~~k~g~f~rlk~gL~kt~~~l~~~~~~lf~~kkiD~~~~eeLEe~Li~aDvGv~tt~~ii~~l~~~~~~~~~~~~~~l 269 (499)
T PRK10416 190 EKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEAL 269 (499)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 36422658999998999999999999999866898888999999999997205999999999999999986479999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999987852010012100013667412311354444424789999999852267426774345124568899999753
Q gi|254780709|r 85 LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 (321)
Q Consensus 85 ~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~ 164 (321)
...|++.|.++|.+...++.+. .++|+||||||+|||||||||||||+||+++|+||+|+|||||||||+|||++||++
T Consensus 270 ~~~l~~~~~~il~~~~~~l~~~-~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r 348 (499)
T PRK10416 270 YGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQR 348 (499)
T ss_pred HHHHHHHHHHHHHCCCCCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 9999999999873104466568-999879999747878789899999999997799537884066756899999998424
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH
Q ss_conf 03532122358661245422899996514875998654333211577899998998763022234301123102335225
Q gi|254780709|r 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 (321)
Q Consensus 165 ~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~ 244 (321)
+|||+|....|+||++|+|+|+++|+.++||+||||||||+||+.+||+||+||.|++++..+.+||+++||+|||+|||
T Consensus 349 ~~v~vi~~~~g~Dpa~V~~dai~~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tGQn 428 (499)
T PRK10416 349 NNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN 428 (499)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHH
T ss_conf 57369836899997999999999999729998998577643260999999999999997237899974899977876778
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 77899987643589769996545787069999999997698899975898132555778999998728656
Q gi|254780709|r 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 (321)
Q Consensus 245 ~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd 315 (321)
+++||+.|++.+++||+|+||||||||||++||+++.+++||+|||+||+++||++|+|++|+++||+-.|
T Consensus 429 a~~qak~F~e~~~ltGiIlTKlDGtAKGG~~lsi~~~~~~PI~fiG~GE~idDL~~F~~~~Fv~aLf~~e~ 499 (499)
T PRK10416 429 AVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED 499 (499)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHCCCC
T ss_conf 99999998442799759996567788525999999998839599867988220667798999999844799
No 4
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=690.21 Aligned_cols=310 Identities=44% Similarity=0.757 Sum_probs=286.8
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHCCC
Q ss_conf 100593541489999999999999999999986056---77899999999999997388989999999999987-51278
Q gi|254780709|r 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS---RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKD 78 (321)
Q Consensus 3 ~~~~~~e~m~~f~kLk~gL~kt~~~L~~~l~~l~~~---~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~-~~~~~ 78 (321)
.+...+++.+||++++.||+++++.|...+..++.. .+++++++++||+.||+||||++++..|++.++++ ...++
T Consensus 23 ~~~~~~~~~~~~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~ 102 (340)
T COG0552 23 EEDEEEEKEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKK 102 (340)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 11143210007999988999999999998766301234430048899999999997024699999999999987510236
Q ss_pred C-CHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 9-9899999999987852010012---10001366741231135444442478999999985226742677434512456
Q gi|254780709|r 79 V-SVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 (321)
Q Consensus 79 i-~~~~i~~~l~~~L~~~L~~~~~---~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA 154 (321)
+ +...+...+++.+.++|.+... +......++|+|||||||||+||||||||||+||+.+|+||+|+|||||||||
T Consensus 103 ~~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 103 IKDEETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 89889999999999999846554444365523589867999993488863717999999999789869998233478999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 88999997530353212235866124542289999651487599865433321157789999899876302223430112
Q gi|254780709|r 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 (321)
Q Consensus 155 ~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~ 234 (321)
+|||++||+|+|++++.+++|+|||+|+|||+++|++++||+|||||||||||+.|||+||+||.||+++..+.+|||++
T Consensus 183 iEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~l 262 (340)
T COG0552 183 IEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEIL 262 (340)
T ss_pred HHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 99999999995992782599998089999999999976999999967554457366899999999984645689984289
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 310233522577899987643589769996545787069999999997698899975898132555778999998728
Q gi|254780709|r 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 (321)
Q Consensus 235 lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG 312 (321)
||+||++|||+++||+.|++++++||+|+||||+|||||++|||++++++||+|||+||+++||+||++++|++.||+
T Consensus 263 lvlDAttGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 263 LVLDATTGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHC
T ss_conf 997756475689999999875288669997024677762435088886999799857888443200699999998609
No 5
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=0 Score=664.75 Aligned_cols=290 Identities=32% Similarity=0.509 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC----C-HHHHHHHHHHH
Q ss_conf 999999999999986056778999----99999999997388989999999999987512789----9-89999999998
Q gi|254780709|r 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----S-VQRVLYDVSEL 91 (321)
Q Consensus 21 L~kt~~~L~~~l~~l~~~~~lde~----~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i----~-~~~i~~~l~~~ 91 (321)
|+.++++|++.++++.++..|+|+ .++|++.+||+|||+++++++++++++++..++++ + .+.++++++++
T Consensus 2 f~~Ls~~l~~~~~~l~g~~~lte~~i~~~lrEIr~ALLeADV~~~vvk~~i~~vke~~~g~~v~~~l~p~q~i~kiv~~e 81 (453)
T PRK10867 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNE 81 (453)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 37888999999997149987789999999999999999756887999999999999963351357898899999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 7852010012100013667412311354444424789999999852-267426774345124568899999753035321
Q gi|254780709|r 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 (321)
Q Consensus 92 L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~-~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~ 170 (321)
|.++|++...++.+. +.+|+||||||+||||||||+||||+||++ ++++|+++|||||||||+|||++||++++||||
T Consensus 82 L~~lLg~~~~~l~~~-~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~ 160 (453)
T PRK10867 82 LVAAMGEENQTLNLA-AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (453)
T ss_pred HHHHHCCCCCCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 999858887666337-8999699997468885185899999999973898379855887705899999999985198043
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 22358661245422899996514875998654333211577899998998763022234301123102335225778999
Q gi|254780709|r 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 (321)
Q Consensus 171 ~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~ 250 (321)
.++.++||++|+++|+++|+.++||+||||||||+|+|.+||+||++|+++++ |+|++||+||++||+|++||+
T Consensus 161 ~~~~~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~------P~e~llV~Da~~GQ~a~~~a~ 234 (453)
T PRK10867 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234 (453)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHC------CCCEEEEEECCCCHHHHHHHH
T ss_conf 67889988999999999999779999999787601210888999999987637------871379743223566899999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 8764358976999654578706999999999769889997589813255577899999872865646
Q gi|254780709|r 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 (321)
Q Consensus 251 ~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd~~ 317 (321)
.|+++++++|+|+||||+|||||+|||+++.+++||+|||+||++|||++|+|+||++|||||||.-
T Consensus 235 ~F~~~~~~~gvIlTKlDgdarGG~alS~~~~t~~PI~FiG~GEk~ddle~F~p~r~asRILGmGDi~ 301 (453)
T PRK10867 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVL 301 (453)
T ss_pred HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHH
T ss_conf 9998559870787504678761389899999786967886699824588768489999861898789
No 6
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=0 Score=647.54 Aligned_cols=285 Identities=32% Similarity=0.527 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC----C-HHHHHHHHHH
Q ss_conf 9999999999999986056778999----99999999997388989999999999987512789----9-8999999999
Q gi|254780709|r 20 GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----S-VQRVLYDVSE 90 (321)
Q Consensus 20 gL~kt~~~L~~~l~~l~~~~~lde~----~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i----~-~~~i~~~l~~ 90 (321)
.|+.++++|++.++++.++..++|+ .++|++.+||+|||+++++++++++++++..++++ + .+.+++++++
T Consensus 2 mf~~Ls~~l~~~~~~l~g~~~l~E~~i~~~l~eIr~ALLeADV~~~vvk~f~~~vk~k~~g~~v~~~~~p~q~iikiv~~ 81 (433)
T PRK00771 2 MLDKLGSSLKDALKKLAGATVIDKKTVKEVVKDIQRALLQADVNVKLVMNLSKEIERRALEEEPPKGMSKKEHIIKIVYE 81 (433)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 76889899999999861899889999999999999999965678799999999999997146245789989999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 87852010012100013667412311354444424789999999852267426774345124568899999753035321
Q gi|254780709|r 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 (321)
Q Consensus 91 ~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~ 170 (321)
+|.++|++... ...+|+||||||+||||||||+||||+||+++|++|+|+|||||||||+|||++||++++||||
T Consensus 82 eL~~llg~~~~-----~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~ 156 (433)
T PRK00771 82 ELVKLLGEEAE-----ILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFY 156 (433)
T ss_pred HHHHHHCCCCC-----CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99998496765-----6689858999737889789999999999997799467850678836899999999986388731
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 22358661245422899996514875998654333211577899998998763022234301123102335225778999
Q gi|254780709|r 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 (321)
Q Consensus 171 ~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~ 250 (321)
..+.++||++|+++|+++++ +||+||||||||+|+|++||+||++|+++++ |+|++||+||++||+|++||+
T Consensus 157 ~~~~~~dp~~i~~~a~~~~k--~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~------P~e~llV~Da~~GQ~a~~~a~ 228 (433)
T PRK00771 157 GDPKEKDAVKIVKEGLEKLK--KVDVIIVDTAGRHKLEKDLIEEMKQIKEITK------PDEVILVIDATIGQQASEQAK 228 (433)
T ss_pred CCCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHC------CCEEEEEEECCCCHHHHHHHH
T ss_conf 78899999999999999845--6988999776521040999999999987757------976899865442267899999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 8764358976999654578706999999999769889997589813255577899999872865646
Q gi|254780709|r 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 (321)
Q Consensus 251 ~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd~~ 317 (321)
.|+++++++|+|+||||||||||+|||+++.+++||+|+|+||+++||++|+|+||++|||||||.-
T Consensus 229 ~F~~~~~i~gvIlTKlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~asRILGmGDi~ 295 (433)
T PRK00771 229 AFKEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFISRLLGMGDLK 295 (433)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHH
T ss_conf 9987538873799725678873054218988789956886178721488668088999870898589
No 7
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=645.30 Aligned_cols=290 Identities=35% Similarity=0.553 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHH
Q ss_conf 999999999999986056778999----999999999973889899999999999875127899-----89999999998
Q gi|254780709|r 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSEL 91 (321)
Q Consensus 21 L~kt~~~L~~~l~~l~~~~~lde~----~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~-----~~~i~~~l~~~ 91 (321)
|+.+.++|++.++.+.+...++|. .++|++.+||+|||++.++++++++++++..+.+++ .+.++++++++
T Consensus 2 ~e~L~~~l~~~~~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eE 81 (451)
T COG0541 2 FESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEE 81 (451)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 47899999999998637786779999999999999999644468999999999999861466788899899999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78520100121000136674123113544444247899999998522674267743451245688999997530353212
Q gi|254780709|r 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 (321)
Q Consensus 92 L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~ 171 (321)
|.++|++...++.+. ..+|+||||||++|+|||||+||||+||+++|+||++||||||||||+|||+++|++++||||.
T Consensus 82 Lv~llG~~~~~l~l~-~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 82 LVKLLGGENSELNLA-KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred HHHHHCCCCCCCCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEC
T ss_conf 999848887665037-8998589998156797486899999999974994589850567868999999999860985316
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 23586612454228999965148759986543332115778999989987630222343011231023352257789998
Q gi|254780709|r 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 (321)
Q Consensus 172 ~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~ 251 (321)
...+.||+.||.+|+++|+.++||+||||||||+|.|+.||+||..|+++++ |+|++||+||++||+|.++|+.
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~------P~E~llVvDam~GQdA~~~A~a 234 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVIN------PDETLLVVDAMIGQDAVNTAKA 234 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------CCEEEEEEECCCCHHHHHHHHH
T ss_conf 7788997999999999999749988999688733030999999999985539------8748998764445678999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 764358976999654578706999999999769889997589813255577899999872865646
Q gi|254780709|r 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 (321)
Q Consensus 252 F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd~~ 317 (321)
||+.++++|+|+||+|||||||+|||+.+.+++||+|||+||+++||++|+|+||++|||||||.-
T Consensus 235 F~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~ 300 (451)
T COG0541 235 FNEALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVL 300 (451)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHH
T ss_conf 866269864999714678762288856998789859974588735477749588999853732099
No 8
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=100.00 E-value=0 Score=594.14 Aligned_cols=292 Identities=29% Similarity=0.461 Sum_probs=267.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC-HHH----HHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHCCCCCH-----HHHHHH
Q ss_conf 9999999999999860567789-999----999999999738898999999999998---751278998-----999999
Q gi|254780709|r 21 FASTSLKLKEGITDIISSRRLD-DGV----REELEDLLIRSDIGVAVAQKIVEELLT---KRYAKDVSV-----QRVLYD 87 (321)
Q Consensus 21 L~kt~~~L~~~l~~l~~~~~ld-e~~----leeLee~LL~ADVg~~va~~Iie~ik~---~~~~~~i~~-----~~i~~~ 87 (321)
|+.+-++|+.+|+++-+..-+| |++ +.|++.+||++||.+..++++.++||+ +...++++. .-+..+
T Consensus 2 LA~LG~~l~~AL~~~~saTv~dse~vl~~~Lkei~~ALL~~dvn~klv~~l~~Nik~kid~~n~e~~~~g~nKRk~iq~~ 81 (453)
T TIGR01425 2 LADLGSSLVSALRSMSSATVIDSEEVLNEMLKEICTALLESDVNVKLVRQLRENIKKKIDKINLEELASGLNKRKLIQKA 81 (453)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 10101489999860123611044899999999998875113352677898888788740503513321032478999998
Q ss_pred HHHHHHHHCCCCCCC-----C-----------CCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 999878520100121-----0-----------001366741231135444442478999999985226742677434512
Q gi|254780709|r 88 VSELIHKMLMPLSKP-----F-----------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 88 l~~~L~~~L~~~~~~-----~-----------~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
+-++|.+++.|...+ + ..+.+++++||||||+||+||||||.|||+||+++|+||.||+|||||
T Consensus 82 vF~EL~~LvDp~~~APkPkklststktinGkk~~p~Kgk~~ViMfVGLQGaGKTTtctKLA~YYk~rGfK~~lvCADTFR 161 (453)
T TIGR01425 82 VFEELCNLVDPGVEAPKPKKLSTSTKTINGKKFTPKKGKSSVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFR 161 (453)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 99998976086323468753332110103503411568821588862148871566878777763266432565177542
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 45688999997530353212235866124542289999651487599865433321157789999899876302223430
Q gi|254780709|r 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 (321)
Q Consensus 152 ~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~ 231 (321)
|||+||||..|.+-+||||+++.+.||+.||+++++.|+++++|+|||||.||+..+..|..|+..+.++++ |+
T Consensus 162 AGAFdQLkqNA~kA~iPFYGsy~E~DPVkiA~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~------Pd 235 (453)
T TIGR01425 162 AGAFDQLKQNATKAKIPFYGSYLESDPVKIASEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIK------PD 235 (453)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC------CC
T ss_conf 324899987476448971201048987078002011322127847998379873225888899876863349------98
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 11231023352257789998764358976999654578706999999999769889997589813255577899999872
Q gi|254780709|r 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 (321)
Q Consensus 232 ~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~ll 311 (321)
.+++|+|+.+||.|..||++|++.+++.+||+|||||+||||+|||++..|+-||.||||||+|||||+|+|+.|+++||
T Consensus 236 ~iifVMDGsIGQAA~~QAkAFK~~~~vGSvIiTKLDGHAkGGGALSAVAATKsPiiFIGTGEhv~d~E~F~~~~FvskLL 315 (453)
T TIGR01425 236 SIIFVMDGSIGQAAFSQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDDFEIFDAEPFVSKLL 315 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHC
T ss_conf 36998066166788999998630035003887515677676237889875359779813775027605789971477540
Q ss_pred CCCCCCC
Q ss_conf 8656463
Q gi|254780709|r 312 GCLDYGE 318 (321)
Q Consensus 312 G~gd~~~ 318 (321)
||||+-+
T Consensus 316 GmGDl~G 322 (453)
T TIGR01425 316 GMGDLKG 322 (453)
T ss_pred CCCCHHH
T ss_conf 2021889
No 9
>KOG0780 consensus
Probab=100.00 E-value=0 Score=555.77 Aligned_cols=290 Identities=29% Similarity=0.472 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC----HH-HHHHHHHHHH
Q ss_conf 9999999999998605677899----9999999999973889899999999999875127899----89-9999999987
Q gi|254780709|r 22 ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQ-RVLYDVSELI 92 (321)
Q Consensus 22 ~kt~~~L~~~l~~l~~~~~lde----~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~----~~-~i~~~l~~~L 92 (321)
+.+..++.++++.+.....+++ ..++|++.+||+|||++.+++++.+++++.....++. .. .+...+.++|
T Consensus 4 a~lGrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL 83 (483)
T KOG0780 4 AELGRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDEL 83 (483)
T ss_pred HHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 77650689999985268862077899999999999985258888999999999987462420244578899999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 85201001210001366741231135444442478999999985226742677434512456889999975303532122
Q gi|254780709|r 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 (321)
Q Consensus 93 ~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~ 172 (321)
..++.|...++ .+.+.+|+||||||+||+||||||+|||+||+++|+||+|||+|||||||++||++||.+.+||||++
T Consensus 84 ~kl~dp~~~~~-~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygs 162 (483)
T KOG0780 84 VKLLDPGKSAL-QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGS 162 (483)
T ss_pred HHHHCCCCCCC-CCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEC
T ss_conf 99718997646-61568970899983057886300899999998468724577602245306899998767407706840
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 35866124542289999651487599865433321157789999899876302223430112310233522577899987
Q gi|254780709|r 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 (321)
Q Consensus 173 ~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F 252 (321)
..+.||+.|+.++++.||+++||+||+||+||+|.+..||+||..+.++++ |++++||+||++||.|..||+.|
T Consensus 163 yte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~------Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780 163 YTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK------PDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC------CCEEEEEEECCCCHHHHHHHHHH
T ss_conf 366555899999999888639728998278730124899999999985159------87389998562007679999988
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 643589769996545787069999999997698899975898132555778999998728656463
Q gi|254780709|r 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 (321)
Q Consensus 253 ~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd~~~ 318 (321)
++.++++++|+|||||+||||++||++..++.||.|||+||++||||||+|++|++|||||||.-.
T Consensus 237 k~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~g 302 (483)
T KOG0780 237 KETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEG 302 (483)
T ss_pred HHHHCCCEEEEEECCCCCCCCCEEEEHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHH
T ss_conf 776154037997225677777345303540798799816755111577780779998715652899
No 10
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=0 Score=512.45 Aligned_cols=254 Identities=19% Similarity=0.288 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 99999999999738898999999999998751278998999999999878520100121000136674123113544444
Q gi|254780709|r 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 (321)
Q Consensus 44 ~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~G 123 (321)
+.++|++.+|++|||+++++++|+++++++..+.....+++++.+.+.+...+.... ....+|++||||||||||
T Consensus 13 ~~l~ei~~aLleaDV~~~vv~~~~~~ik~k~~~~~~~~~~vi~~l~~~l~~~~~~~~-----~~~~~~~vI~lvG~~G~G 87 (270)
T PRK06731 13 FIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTEN-----VFEKEVQTIALIGPTGVG 87 (270)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-----CCCCCCEEEEEECCCCCC
T ss_conf 999999999997699889999999999988504553299999999999987507665-----467998189998889898
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 24789999999852267426774345124568899999753035321223586612454228999965148759986543
Q gi|254780709|r 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 (321)
Q Consensus 124 KTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAG 203 (321)
||||+||||+||+++|++|++++||||||||+|||++||+++|+|++... ||.++......+++..++|+|||||||
T Consensus 88 KTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~---~~~~~~~~~~~~~~~~~~DvilIDTAG 164 (270)
T PRK06731 88 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVDYILIDTAG 164 (270)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCC---CHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 89999999999986799089998388888899999999998199535458---878999999999997699999997999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 3321157789999899876302223430112310233-522577899987643589769996545787069999999997
Q gi|254780709|r 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT-TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 (321)
Q Consensus 204 R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~-~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~ 282 (321)
|+|+|.++|+||.++.+.++ |++++||+||+ .||++.++++.|+. ++++|+|+||||||+|||++||+++.+
T Consensus 165 R~~~d~~lm~el~~~~~~~~------p~~~~Lvldas~~~~~~~~~~~~f~~-~~i~gvIlTKlD~ta~gG~als~~~~~ 237 (270)
T PRK06731 165 KNYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVS 237 (270)
T ss_pred CCCCCHHHHHHHHHHHCCCC------CCEEEEEEECCCCHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 87146999999999860638------98799998687776999999998077-999889996535899772999999998
Q ss_pred CCCEEEEECCCCC-CCCCCCCHHHHHHHHCC
Q ss_conf 6988999758981-32555778999998728
Q gi|254780709|r 283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 (321)
Q Consensus 283 ~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG 312 (321)
++||+|+|+||+| +||++|+|+++++|||+
T Consensus 238 ~~PI~fig~Ge~VpeDi~~~~~~~la~riL~ 268 (270)
T PRK06731 238 SAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ 268 (270)
T ss_pred CCCEEEEECCCCCHHHHHCCCHHHHHHHHHH
T ss_conf 8597999459997021413799999999830
No 11
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=0 Score=482.35 Aligned_cols=241 Identities=22% Similarity=0.308 Sum_probs=200.4
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHH
Q ss_conf 99738898999999999998751278998999999999878520100121000136674123113544444247899999
Q gi|254780709|r 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 (321)
Q Consensus 53 LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA 132 (321)
++-+|+...+.+++ .++ +.+..+.+..++...+...|.. .++..+. .-.|||||||||||||||+||||
T Consensus 159 ~~~~~f~~~~~~~~-~~~------e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~---~g~VIaLVGvnGvGKTTTiAKLA 227 (407)
T PRK12726 159 TYVADFMQAGRKQF-KQV------ETAHLDDITDWFVPYLSGKLAV-EDSFDLS---NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred HHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHCCCCCC-CCEEEEC---CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 66542448899999-887------3101534068999975389770-3202303---69089998999897899999999
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEEECCCCCCCHHHH
Q ss_conf 99852267426774345124568899999753035321223586612454228999-96514875998654333211577
Q gi|254780709|r 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ-AQAKKVDVLIIDTAGRLHNNSIL 211 (321)
Q Consensus 133 ~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~-a~~~~~DvvliDTAGR~~~~~~l 211 (321)
++|+++|+||+|+|||||||||+|||++||+++||||+. +.||+++. +++.+ ++.+++|+||||||||+|++.+|
T Consensus 228 ~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~---~~dpa~l~-~av~~~a~~~~~DvVIIDTAGRl~~d~~L 303 (407)
T PRK12726 228 WQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV---ATSPAELE-EAVQYMTYVNCVDHILIDTVGRNYLAEES 303 (407)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEE---ECCHHHHH-HHHHHHHHCCCCCEEEEECCCCCCCCHHH
T ss_conf 999977991799970667788999999999997964998---18889999-99999986289998999699988134999
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEC
Q ss_conf 89999899876302223430112310233522577899987643589769996545787069999999997698899975
Q gi|254780709|r 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 (321)
Q Consensus 212 m~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~ 291 (321)
|+||.+|.++++ |++++||+|++++++...++..|+..++++|+|+||||||+|||++||+++.+++||+|+|+
T Consensus 304 m~EL~ki~~vi~------P~~~lLV~dag~~~~~v~qa~~~~~~v~ItGiILTKLDgtAKGG~aLSi~~~~~lPI~fIG~ 377 (407)
T PRK12726 304 VSEISAYTDVVH------PDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred HHHHHHHHHCCC------CCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEEC
T ss_conf 999999873328------96699993675669999999987047999879997014789853999999998889799947
Q ss_pred CCCC-CCCCCCCHHHHHHHHCCCC
Q ss_conf 8981-3255577899999872865
Q gi|254780709|r 292 GEGI-NDLEPFVAKDFSAVITGCL 314 (321)
Q Consensus 292 Ge~i-~Dl~~f~~~~~~~~llG~g 314 (321)
||+| |||.+||+.++++|+||--
T Consensus 378 GEkIPEDi~~~~~~~l~~R~l~~~ 401 (407)
T PRK12726 378 GQNITENIFRPKSRWLAERFVGTD 401 (407)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCH
T ss_conf 999970120289899999984631
No 12
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=0 Score=445.47 Aligned_cols=265 Identities=22% Similarity=0.284 Sum_probs=215.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 7789999999999999738898999999999998751278998-999999999878520100121000136674123113
Q gi|254780709|r 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117 (321)
Q Consensus 39 ~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~-~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~v 117 (321)
..++...+..+++.|.+.|+.....+++.+.++++....++.. +.+...+...+.+.+.. ..+. ....++.|++||
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~l~~~i~~~i~~-~~~~--~~~~k~~vi~lV 180 (388)
T PRK12723 104 EEINHPTILKIEDILRSNDFSESYIKDINEFIKREFSLSDLDDYDKVRDSVIIYIAKTIKC-SGSI--IDNLKKRIFILV 180 (388)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC-CCCC--CCCCCCEEEEEE
T ss_conf 4445535899999998675579999999999998722122440879999999999976223-6665--335576289998
Q ss_pred CCCCCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 54444424789999999852----26742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 118 GVNGVGKTTVIGKLSKKMSD----AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 118 G~nG~GKTTT~aKLA~~~~~----~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
||+|||||||+||||++|.. ++++|+||++||||+||+|||++||+++|||++......|+. +++. +.++
T Consensus 181 GPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~----~~l~--~~~~ 254 (388)
T PRK12723 181 GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLK----EEIT--QSKD 254 (388)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHH----HHHH--HHCC
T ss_conf 998875787999999999986267677379998078758899999999999788069857889999----9999--7249
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 8759986543332115778999989987630222343011231023352257789-998764358976999654578706
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARG 272 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~-a~~F~~~~~~~g~I~TKlD~ta~~ 272 (321)
+|+||||||||+|.|..+|.||+++.+.++ .+.+++||++|+++++...+ ++.| +.++++++||||||||+++
T Consensus 255 ~D~IlIDTAGrs~~d~~~~~el~~~~~~~~-----~~~~~~Lvlsat~~~~d~~~i~~~f-~~~~~~~~I~TKlDEt~~~ 328 (388)
T PRK12723 255 FDLVLIDTIGKSPKDFMKLAEMKELLNACG-----RDAEFHLAVSSTTKTSDIKEIFHQF-SPFSYKTVIFTKLDETTCV 328 (388)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCC-----CCCEEEEEECCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCCCCC
T ss_conf 999999589988568999999999997418-----9845999987989999999999984-2799984999832278986
Q ss_pred HHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHHCC--CCCCCC
Q ss_conf 99999999976988999758981-32555778999998728--656463
Q gi|254780709|r 273 GGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG--CLDYGE 318 (321)
Q Consensus 273 G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG--~gd~~~ 318 (321)
|.+||+.+.+++||+|+|+||+| |||++|+|++|+++|+| +||-.|
T Consensus 329 G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~ilG~~~~~~~~ 377 (388)
T PRK12723 329 GNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAE 377 (388)
T ss_pred CHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
T ss_conf 6999999998888699938996830203389999999984871454699
No 13
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=100.00 E-value=0 Score=455.49 Aligned_cols=196 Identities=49% Similarity=0.780 Sum_probs=192.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
|+||+||||+|||||||+||||++++++|++|++|++||||+||+|||++||+++|+|++....++||+++++++++.++
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~ 80 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAK 80 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96999989999988999999999999779928999758776889999999998639817814877787899999999988
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 51487599865433321157789999899876302223430112310233522577899987643589769996545787
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta 270 (321)
.+++|+||||||||+|.|.++|+||+++...++ |++++||+||++||++.+++..|++.++++|+|+||||||+
T Consensus 81 ~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~------~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~ 154 (196)
T pfam00448 81 AENYDVVLVDTAGRLQNDKNLMDELKKIKRVIA------PDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTKLDGDA 154 (196)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC------CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 468999999899987476778999999985228------73028998567782137899987600477626888405788
Q ss_pred CHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 069999999997698899975898132555778999998728
Q gi|254780709|r 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 (321)
Q Consensus 271 ~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG 312 (321)
++|.++|++..+++||+|+|+||+|+||++|+|++|+++|||
T Consensus 155 ~~G~~l~~~~~~~~Pi~~~t~Gq~v~Dl~~~~~~~~~~~lLG 196 (196)
T pfam00448 155 KGGAALSIAAETGKPIKFIGVGEKIDDLEPFDPERFVSRLLG 196 (196)
T ss_pred CCCHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf 752999899998969799967998120634799999998559
No 14
>KOG0781 consensus
Probab=100.00 E-value=0 Score=450.55 Aligned_cols=284 Identities=31% Similarity=0.479 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHH
Q ss_conf 99999999999986056778999----999999999973889899999999999875127899-----899999999987
Q gi|254780709|r 22 ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELI 92 (321)
Q Consensus 22 ~kt~~~L~~~l~~l~~~~~lde~----~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~-----~~~i~~~l~~~L 92 (321)
.++...+.+-|+++.+++.|.++ .++.+++-||.-.|..+.++++++.+...+.++.+. ...+...+++.|
T Consensus 274 ~k~~g~aFg~fkglvG~K~L~eeDL~pvL~km~ehLitKNVA~eiA~~LcesV~a~Legkkv~sfs~V~~Tvk~Al~daL 353 (587)
T KOG0781 274 KKTVGGAFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDAL 353 (587)
T ss_pred HCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 42024589988863155644475669999999999876201289999999999998510210450277899999999999
Q ss_pred HHHCCCCCCC-----C-CCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH-
Q ss_conf 8520100121-----0-00136674123113544444247899999998522674267743451245688999997530-
Q gi|254780709|r 93 HKMLMPLSKP-----F-NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT- 165 (321)
Q Consensus 93 ~~~L~~~~~~-----~-~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~- 165 (321)
..+|.|.... + ....+.+|+||.|||||||||.|++||+|+|+..++.+|+++||||||+||+|||++|.+++
T Consensus 354 vQILTP~~sVDlLrdI~~ar~~krPYvi~fvGVNGVGKSTNLAKIayWLlqNkfrVlIAACDTFRsGAvEQLrtHv~rl~ 433 (587)
T KOG0781 354 VQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLS 433 (587)
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 98738873066999999987468975999982147665132999999998578369998624312447899999999998
Q ss_pred -----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf -----353212235866124542289999651487599865433321157789999899876302223430112310233
Q gi|254780709|r 166 -----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 (321)
Q Consensus 166 -----~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~ 240 (321)
-|++|...+|.||+.||++||++|+.++|||||||||||+|+|.+||.-|.|+.++-+ ||.+++|-.|+
T Consensus 434 ~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDvvLiDTAGRmhn~~~LM~~L~kl~~~n~------pD~i~~VgEAL 507 (587)
T KOG0781 434 ALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNK------PDLILFVGEAL 507 (587)
T ss_pred HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCC------CCEEEEEHHHH
T ss_conf 745520488861047782899999999998669878998354433478067899999974479------86599850555
Q ss_pred CCHHHHHHHHHHHHHC-------CCCEEEEECCCC-CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 5225778999876435-------897699965457-8706999999999769889997589813255577899999872
Q gi|254780709|r 241 TGQNALRQVEMFHAVA-------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 (321)
Q Consensus 241 ~gq~~~~~a~~F~~~~-------~~~g~I~TKlD~-ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~ll 311 (321)
.|.|+++|++.|+.++ .+||+|+||+|. +.+.|+++|++|.++.||.|+|+||.|.||+..+.+++++.||
T Consensus 508 VG~dsvdq~~~Fn~al~d~~~~r~iDgilltK~DTvdd~vG~~v~Mvy~t~~PIlFvG~GQtysDLr~l~vk~vV~tLm 586 (587)
T KOG0781 508 VGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATLM 586 (587)
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHCCHHHHHHHHH
T ss_conf 2755899999999987448974423437887125065688878764200389769984586610376525899999863
No 15
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=0 Score=441.53 Aligned_cols=265 Identities=22% Similarity=0.287 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 99999999999973889899999999999875127899-89999999998785201001210001366741231135444
Q gi|254780709|r 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 (321)
Q Consensus 43 e~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~-~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG 121 (321)
+..+..+.+.|+..+|+...++++.+.+.++....+.. ...+...+.+.+...+......+.......+.||+||||||
T Consensus 154 ~~~~~~l~~~L~~~~~~~~~~~~i~~~l~~~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~kvi~lVGPTG 233 (432)
T PRK12724 154 DSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTG 233 (432)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEECCCC
T ss_conf 76899999999875668899999999998753810011067899999999998714774011035777762999989999
Q ss_pred CCHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 442478999999985-2267426774345124568899999753035321223586612454228999965148759986
Q gi|254780709|r 122 VGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 (321)
Q Consensus 122 ~GKTTT~aKLA~~~~-~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliD 200 (321)
||||||+||||++|. ++|+||+||++||||+||+|||++||+++|||++... ||... .+++.. +++|+||||
T Consensus 234 VGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~---~~~el-~~al~~---~~~DlILID 306 (432)
T PRK12724 234 SGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK---DIKKF-KETLAR---DGSELILID 306 (432)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CHHHH-HHHHHH---CCCCEEEEE
T ss_conf 88899999999999997499279995266537799999999998599459951---89999-999985---699999992
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 54333211577899998998763022234301123102335225-77899987643589769996545787069999999
Q gi|254780709|r 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN-ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 (321)
Q Consensus 201 TAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~-~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~ 279 (321)
||||+|.|...|+||+.+.+++. +..+.+++||++||+..+ ..++++.|. .++++++||||||||+.+|.+||++
T Consensus 307 TAGrS~rd~~~~~eL~~ll~~~~---~~~~ie~~LVLSaTtk~~dl~~ii~~f~-~l~~~~lIfTKLDET~s~G~ilni~ 382 (432)
T PRK12724 307 TAGYSHRNLEQLERMQSFYSCFG---EKDSVENLLVLSSTSSYHHTLTVLKAYE-SLNYRRILLTKLDEADFLGSFLELA 382 (432)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC---CCCCCEEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 99989789999999999998636---6788517999978899899999999842-6999849997122779866999999
Q ss_pred HHHCCCEEEEECCCCC-CCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 9976988999758981-32555778999998728656463
Q gi|254780709|r 280 VTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGE 318 (321)
Q Consensus 280 ~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG~gd~~~ 318 (321)
+.+++||+|+|+||+| |||++++|+++++.|||-.-+.|
T Consensus 383 ~~~~~PisYiT~GQ~VPdDI~~A~~~~la~lilg~~~~~~ 422 (432)
T PRK12724 383 DTYSKSFTYLSVGQEVPFDILNATKNLMAECVVFPEKIAE 422 (432)
T ss_pred HHHCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9988986998089979717333599999999766798998
No 16
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=0 Score=420.97 Aligned_cols=286 Identities=26% Similarity=0.363 Sum_probs=236.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 14899999999999999999999860567-78999999999999973889899999999999875127899899999999
Q gi|254780709|r 11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 (321)
Q Consensus 11 m~~f~kLk~gL~kt~~~L~~~l~~l~~~~-~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~ 89 (321)
-.-++.+++.++..++.|......+.... ...+.....+.+.|++++|+..++++|++.+.+ ..+..+....+.
T Consensus 118 ~~~~~~l~~El~~lr~~l~~~~~~~~~~~~~~~~p~~~~l~~~L~~~Gvs~~la~~l~~~~~~-----~~~~~~~~~~l~ 192 (412)
T PRK05703 118 EKELKDMRKELAELKELLEHQLSMLAWEKLERIPPEFAKLYKRLKESGLSPEIADKLLKLLLE-----DMNPREAWRYLL 192 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHH
T ss_conf 378999999999999999999864101222348878999999999869999999999998664-----289799999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH-HCCC-CEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98785201001210001366741231135444442478999999985-2267-426774345124568899999753035
Q gi|254780709|r 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGL-KVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 90 ~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~-kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
..|.+.+..... .......+|+||||+|||||||+||||++|. ++|+ +|+||++||||+||+|||++||+++||
T Consensus 193 ~~L~~~l~~~~~----~~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgv 268 (412)
T PRK05703 193 ELLANMLPTRVE----DILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGI 268 (412)
T ss_pred HHHHHHCCCCCC----CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 999975788876----6545673699988888756769999999999972998179998376777799999999997197
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-HHHH
Q ss_conf 321223586612454228999965148759986543332115778999989987630222343011231023352-2577
Q gi|254780709|r 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG-QNAL 246 (321)
Q Consensus 168 ~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g-q~~~ 246 (321)
|++.... |.. ..++++. ..++|+||||||||+|.|...++||+.+.+... |.+++|||+|++. ++..
T Consensus 269 p~~v~~~---~~~-l~~al~~--~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~------~~~~~LVlsat~~~~dl~ 336 (412)
T PRK05703 269 PVKVAYD---PKE-LAKALEQ--LANCDLILIDTAGRSQRDPRLISELKALIENSK------PIDVYLVLSATTKYRDLK 336 (412)
T ss_pred EEEEECC---HHH-HHHHHHH--HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC------CCCEEEEECCCCCHHHHH
T ss_conf 3798479---999-9999987--158997999689889789999999999986248------871899975989989999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 8999876435897699965457870699999999976988999758981-32555778999998728656463
Q gi|254780709|r 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGE 318 (321)
Q Consensus 247 ~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG~gd~~~ 318 (321)
++++.|.. ++++++||||||||++.|.+||++..+++||+|+++||+| |||++++++++++++||-.|.+|
T Consensus 337 ~i~~~f~~-~~~~~lI~TKlDEt~~~G~il~~~~~~~lplsy~t~GQ~VPeDi~~a~~~~l~~~~l~g~~~~~ 408 (412)
T PRK05703 337 DIVKHFSR-LPLDGLILTKLDETSSLGSILSLLIESGLPISYLTDGQRVPDDIKVATPEELVRLALGGFLKCE 408 (412)
T ss_pred HHHHHHCC-CCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 99998467-9998799971128998629999999988796999469997243422899999999858755567
No 17
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=0 Score=408.50 Aligned_cols=286 Identities=23% Similarity=0.281 Sum_probs=229.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 14899999999999999999999860567-78999999999999973889899999999999875127899899999999
Q gi|254780709|r 11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 (321)
Q Consensus 11 m~~f~kLk~gL~kt~~~L~~~l~~l~~~~-~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~ 89 (321)
......+.+.+..+++.+...+.++.... .-.+.....+.+.|+.++|+..+++++++++.. +.+.+.....+.
T Consensus 82 ~~~~~~l~~El~~lr~~l~~ql~~~~~~~~~~~~p~~~~l~~~L~~~g~~~~la~~l~~~l~~-----~~~~~~~~~~~~ 156 (404)
T PRK06995 82 DIVNATVMQELGSMRGMLEEQLAGLAWGDRQRRDPVRGALFRHLLAAGFSAQLVRMLLENLPA-----GDDAQAAMDWAR 156 (404)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-----CCCHHHHHHHHH
T ss_conf 055899999999999999999998641264425807999999999879999999999984703-----389789999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH-HCCC-CEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98785201001210001366741231135444442478999999985-2267-426774345124568899999753035
Q gi|254780709|r 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGL-KVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 90 ~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~-kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
..|...+....... ..-.+..|++||||+|||||||+||||+++. ++|+ ||+||++||||+||+|||++||+++||
T Consensus 157 ~~l~~~l~~~~~~~--~~~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~Ilgv 234 (404)
T PRK06995 157 SVLASNLPVLGSED--ALMERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 234 (404)
T ss_pred HHHHHHCCCCCCCC--CHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 99997466666653--1011475589866888763758999999999983898379997687547899999999987595
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHH
Q ss_conf 3212235866124542289999651487599865433321157789999899876302223430112310233522-577
Q gi|254780709|r 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NAL 246 (321)
Q Consensus 168 ~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~ 246 (321)
|++...... . ..+++.. .+++|+||||||||+|.|..+++|+..+... ..|.+++||++|++.. +..
T Consensus 235 Pv~vv~~~~---e-L~~aL~~--l~~~dlILIDTaGrs~rD~~~~e~l~~l~~~------~~~~~~~LVLsat~~~~dl~ 302 (404)
T PRK06995 235 PVHAVKDAA---D-LRLALAE--LRNKHIVLIDTVGMSQRDRMVSEQIAMLHGA------GAPVQRLLLLNATSHGDTLN 302 (404)
T ss_pred EEEEECCHH---H-HHHHHHH--HCCCCEEEEECCCCCCCCHHHHHHHHHHHHC------CCCCEEEEEECCCCCHHHHH
T ss_conf 599959999---9-9999997--0899999980999897688899999999735------78852899977989999999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHHCCCCCC
Q ss_conf 8999876435897699965457870699999999976988999758981-325557789999987286564
Q gi|254780709|r 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDY 316 (321)
Q Consensus 247 ~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG~gd~ 316 (321)
++++.|. .++++++||||||||++.|.+||+++.+++||+|+++||+| |||++.+++..++|-|...-.
T Consensus 303 ~i~~~f~-~~~~~~~I~TKLDEt~~~G~iln~~~~~~lPlsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~~~ 372 (404)
T PRK06995 303 EVVQAYR-GPGLAGCILTKLDEAASLGGALDTVIRHKLPLHYVSNGQRVPEDLHVANAKFLLHRAFCAPRE 372 (404)
T ss_pred HHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHCCCC
T ss_conf 9999844-699983998304067972399999999789859981899584212108989999998626455
No 18
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=100.00 E-value=0 Score=401.86 Aligned_cols=173 Identities=43% Similarity=0.685 Sum_probs=169.1
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
+||+||||||||||||+||||++++++|++|++|++||||+||+|||++||+++|+|++..+.+.||.+++++++++++.
T Consensus 1 ~Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99999899999889999999999997699289997488757799999999997498599227755879999999999875
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 14875998654333211577899998998763022234301123102335225778999876435897699965457870
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~ 271 (321)
+++|+||||||||+|+|.++|+||+++.+.++ |++++||+||++||++.+|++.|++.++++++|+|||||+++
T Consensus 81 ~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~------p~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~~ 154 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVK------PDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDAR 154 (173)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC------CCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 68998999788878799999999999986448------972157424655065899999987427997899971438997
Q ss_pred HHHHHHHHHHHCCCEEEEE
Q ss_conf 6999999999769889997
Q gi|254780709|r 272 GGGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 272 ~G~~ls~~~~~~~Pi~fig 290 (321)
+|.+||+++.+++||+|+|
T Consensus 155 ~G~~ls~~~~~~~Pi~fig 173 (173)
T cd03115 155 GGAALSIRAVTGKPIKFIG 173 (173)
T ss_pred CCHHHHHHHHHCCCEEEEC
T ss_conf 5799999999890908509
No 19
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=0 Score=389.99 Aligned_cols=250 Identities=20% Similarity=0.298 Sum_probs=197.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHH
Q ss_conf 99999999738898999999999998751278-99899999999987852010012100013667412311354444424
Q gi|254780709|r 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 (321)
Q Consensus 47 eeLee~LL~ADVg~~va~~Iie~ik~~~~~~~-i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKT 125 (321)
.++-..|-.+||..-......++++-+..... +..++++..+-+-+.+-.. .-+. +.+....|.||||+|||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~q~IALVGPTGVGKT 255 (436)
T PRK11889 181 QKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFN----TENV-FEKEVQTIALIGPTGVGKT 255 (436)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC----HHHH-HHHHCEEEEEECCCCCCHH
T ss_conf 9999998855525899999999863112134110299999999999887403----1013-3641717999899998889
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCEEEEECCCC
Q ss_conf 789999999852267426774345124568899999753035321223586612454228999965-1487599865433
Q gi|254780709|r 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGR 204 (321)
Q Consensus 126 TT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~-~~~DvvliDTAGR 204 (321)
||+||||++|..++++|+||++||||+||+|||++||+++|+|+..... |..+ .+|+...+. .++|+||||||||
T Consensus 256 TTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~d---p~eL-~~AL~~lkdka~~DLILIDTAGR 331 (436)
T PRK11889 256 TTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD---EAAM-TRALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECC---HHHH-HHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9999999998616980899980663476999999999984994399688---8999-99999876336888899929898
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 321157789999899876302223430112310233522-5778999876435897699965457870699999999976
Q gi|254780709|r 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 (321)
Q Consensus 205 ~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~ 283 (321)
+|.|...|+||..+.+... |++++||++|++.. +..++++.|. .++++|+||||||||+++|.+||+...++
T Consensus 332 S~RD~~~I~EL~~~l~~~~------p~ev~LVLSATTK~~DL~eIi~rF~-~l~idglIfTKLDET~SlG~ILNv~~~s~ 404 (436)
T PRK11889 332 NYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEIITNFK-DIHIDGIVFTKFDETASSGELLKIPAVSS 404 (436)
T ss_pred CCCCHHHHHHHHHHHHHCC------CCEEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 8468999999999985127------7716999978899899999999725-79988289971325687037888998839
Q ss_pred CCEEEEECCCCC-CCCCCCCHHHHHHHHCC
Q ss_conf 988999758981-32555778999998728
Q gi|254780709|r 284 IPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 (321)
Q Consensus 284 ~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG 312 (321)
+||+|+++||+| +||++++++++++.+|-
T Consensus 405 LPIsYvTdGQ~VPEDIevA~ae~LAk~mLe 434 (436)
T PRK11889 405 APIVLMTDGQDVKKNIHIATAEHLAKQMLQ 434 (436)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHH
T ss_conf 987997899858753000699999999843
No 20
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=100.00 E-value=0 Score=384.34 Aligned_cols=218 Identities=29% Similarity=0.414 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9999998785201001210001366741231135444442478999999985--22674267743451245688999997
Q gi|254780709|r 85 LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWA 162 (321)
Q Consensus 85 ~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~--~~g~kV~lva~DtfR~aA~eQL~~~a 162 (321)
.....+.+..++....... .. .++.+|++|||+|||||||+||||++|. .+.++|++|++||||+||+|||++||
T Consensus 180 ~~~~~~~l~~~~~~~~~~~-~~--~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya 256 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENL-IV--EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYA 256 (407)
T ss_pred HHHHHHHHHHHHHHHCCCC-CC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 3217999999887644111-12--46857999899887588799999999975325760689971441152899999999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 53035321223586612454228999965148759986543332115778999989987630222343011231023352
Q gi|254780709|r 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 (321)
Q Consensus 163 ~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g 242 (321)
+++|+|+...... ... -+|+.. .+++|+||||||||+|.|...++||+.+.++. .+.+++||++|++-
T Consensus 257 ~im~vp~~vv~~~---~el-~~ai~~--l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~------~~i~~~Lvlsat~K 324 (407)
T COG1419 257 DIMGVPLEVVYSP---KEL-AEAIEA--LRDCDVILVDTAGRSQYDKEKIEELKELIDVS------HSIEVYLVLSATTK 324 (407)
T ss_pred HHHCCCEEEECCH---HHH-HHHHHH--HHCCCEEEEECCCCCCCCHHHHHHHHHHHHCC------CCCEEEEEEECCCC
T ss_conf 9869955996399---999-999998--53188899968998833789999999997035------66217999845764
Q ss_pred -HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf -25778999876435897699965457870699999999976988999758981-32555778999998728656463
Q gi|254780709|r 243 -QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGE 318 (321)
Q Consensus 243 -q~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG~gd~~~ 318 (321)
++..++.+.|. .+|++|+||||||||.+.|.++|+++++++||+|+++||+| +||...+|++++++++|.-...+
T Consensus 325 ~~dlkei~~~f~-~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~~~ 401 (407)
T COG1419 325 YEDLKEIIKQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFANQE 401 (407)
T ss_pred HHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCHHHHHHHHHCCCCCCC
T ss_conf 688999999724-58866168971335676338999999968974997179878703553586889999861214477
No 21
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=0 Score=369.26 Aligned_cols=274 Identities=22% Similarity=0.306 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999999999999860567789999999999999738898999999999998751278998999999999878
Q gi|254780709|r 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 (321)
Q Consensus 14 f~kLk~gL~kt~~~L~~~l~~l~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~ 93 (321)
++.++..+...++-|...+..+..+..=-+...-.+-+-|+...++..+++++.+.+- .+.+..+....+...|.
T Consensus 260 l~~mr~El~smR~llE~Ql~~L~~e~~r~~P~ra~L~krL~~~GfS~~Lar~L~~~lP-----~~~~~~~a~~~ll~~La 334 (557)
T PRK12727 260 LKQLRGELALMRQMIEREMNRLTDERLRGSPVRAQALELMDDYGFDAGLTRDVAMQIP-----ADTELHRGRGLMLGLLS 334 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHH
T ss_conf 9999999999999999999998887772393889999999976699999999997483-----32788899999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH-HCC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5201001210001366741231135444442478999999985-226-74267743451245688999997530353212
Q gi|254780709|r 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 (321)
Q Consensus 94 ~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~-~~g-~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~ 171 (321)
..|.-..... + .+-.|+.||||+|||||||+||||++|. +.| ++|+||++||||+||+|||++||+++|||++.
T Consensus 335 ~~Lpv~~~d~-~---~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~ 410 (557)
T PRK12727 335 KRLPVAPVDP-L---ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE 410 (557)
T ss_pred HHCCCCCCCH-H---HCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEE
T ss_conf 6287777751-5---40764787437776731179999999999739981899972664087999999999983975798
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHHHHHH
Q ss_conf 235866124542289999651487599865433321157789999899876302223430112310233522-5778999
Q gi|254780709|r 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NALRQVE 250 (321)
Q Consensus 172 ~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~~~a~ 250 (321)
.....| + .+++. ..+++|+||||||||+|.|..+++||..+.. ....+++||++|++.. +..+++.
T Consensus 411 ~~~~~~---l-~~~l~--~l~~~~lvliDTaG~~~rd~~~~~~~~~l~~-------~~~~~~~Lvl~a~~~~~~l~~~~~ 477 (557)
T PRK12727 411 ADSAES---L-LDLLE--RLRDYKLVLIDTAGMGQRDRALAAQLNWLRA-------ARQVTSLLVLPANAHFSDLDEVVR 477 (557)
T ss_pred ECCHHH---H-HHHHH--HHCCCCEEEEECCCCCCCCHHHHHHHHHHHC-------CCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 289999---9-99999--8369998999499988469999999998751-------477635999968899899999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHH
Q ss_conf 876435897699965457870699999999976988999758981-325557789999987
Q gi|254780709|r 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVI 310 (321)
Q Consensus 251 ~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~l 310 (321)
.|. .++++|+||||+||+.+.|.+||++..+++|+.|+++||+| +||++.++..+++|.
T Consensus 478 ~~~-~~~~~~~i~TKlDE~~~~G~~l~~~~~~~lp~~y~t~GQ~VPeDi~~a~~~~Lv~Ra 537 (557)
T PRK12727 478 RFA-HAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRL 537 (557)
T ss_pred HHC-CCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHCCHHHHHHHH
T ss_conf 853-799874899614367870399999999689828975898285236438999999999
No 22
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=100.00 E-value=3.5e-31 Score=239.16 Aligned_cols=175 Identities=25% Similarity=0.316 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999999999999860567789999999999999738898999999999998751278998999999999878
Q gi|254780709|r 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 (321)
Q Consensus 14 f~kLk~gL~kt~~~L~~~l~~l~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~ 93 (321)
.+.+++.+...++.+...+..+... ..+ .....+.+.|++++|...++.+|++.+.. ..+.+.....+...|.
T Consensus 106 ~~~l~~El~~lk~~l~~~~~~~~~~-~~~-~~~~~l~~~L~~~gv~~~~~~~l~~~~~~-----~~~~~~~~~~l~~~L~ 178 (282)
T TIGR03499 106 PEELRKELSALRELLERLLAGLAWL-QRD-PEGAKLYERLEEAGVSEELARELLEKLPE-----RADAESAWRWLREALE 178 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHH
T ss_conf 8999999999999999997554214-588-68999999999869999999999997460-----2997899999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHH-C-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 52010012100013667412311354444424789999999852-2-674267743451245688999997530353212
Q gi|254780709|r 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-A-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 (321)
Q Consensus 94 ~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~-~-g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~ 171 (321)
+.+... +........+.|++||||+|||||||+||||++|.. . +++|+||++||||+||+|||++||+++|||++.
T Consensus 179 ~~i~~~--~~~~~~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~v 256 (282)
T TIGR03499 179 NMLPVK--PEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKV 256 (282)
T ss_pred HHCCCC--CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEE
T ss_conf 647778--876554456727999778887578899999999999738996799980777678999999999995974899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 23586612454228999965148759986543
Q gi|254780709|r 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 (321)
Q Consensus 172 ~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAG 203 (321)
... |..+ .++++. .+++|+|||||||
T Consensus 257 v~~---~~~l-~~~l~~--~~~~d~IlIDTaG 282 (282)
T TIGR03499 257 ARD---PKEL-AKALER--LRDKDLILIDTAG 282 (282)
T ss_pred ECC---HHHH-HHHHHH--CCCCCEEEEECCC
T ss_conf 399---9999-999986--5798999981979
No 23
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=98.94 E-value=4.7e-08 Score=76.86 Aligned_cols=149 Identities=14% Similarity=0.218 Sum_probs=97.6
Q ss_pred CCCCCEEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH---------------HHHH------HH
Q ss_conf 6674123113-544444247899999998522674267743451245688999---------------9975------30
Q gi|254780709|r 108 SHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK---------------IWAD------RT 165 (321)
Q Consensus 108 ~~~p~vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~---------------~~a~------~~ 165 (321)
..++.||++. -..|-||||+++-||.-+...|+||+||-||.-|+.-...+. .|.+ ..
T Consensus 528 ~~~~kvi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~ 607 (726)
T PRK09841 528 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKG 607 (726)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCCC
T ss_conf 88886899977999997799999999999847995999828877710776159999987799838999889933027989
Q ss_pred CCCCCC-CCCCCCCHHHHH----HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-
Q ss_conf 353212-235866124542----28999965148759986543332115778999989987630222343011231023-
Q gi|254780709|r 166 SADFVC-SEIGSDAAALAY----EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA- 239 (321)
Q Consensus 166 ~v~~~~-~~~~~dp~~v~~----~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda- 239 (321)
+++|.. ++...+|+.+.- ..+-..-.+.||+|||||+==+..-..++ |.. ..|-++||+.+
T Consensus 608 ~ldvl~aG~~p~nP~elL~s~~~~~ll~~l~~~yD~IIiDtPPvl~v~Da~~--l~~-----------~~D~~l~Vvr~g 674 (726)
T PRK09841 608 GFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAV--VGR-----------SVGTSLLVARFG 674 (726)
T ss_pred CEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHH--HHH-----------HCCEEEEEEECC
T ss_conf 9899828999979899958769999999998139999991999653415999--999-----------789599999799
Q ss_pred CCCHHHHHHH-HHHHH-HCCCCEEEEECCCCC
Q ss_conf 3522577899-98764-358976999654578
Q gi|254780709|r 240 TTGQNALRQV-EMFHA-VAGTTGLIMTKMDGT 269 (321)
Q Consensus 240 ~~gq~~~~~a-~~F~~-~~~~~g~I~TKlD~t 269 (321)
.|..+.+..+ +.+.+ .+++.|+|++.+|-.
T Consensus 675 ~T~~~~~~~a~~~l~~~~~~v~G~vlN~v~~~ 706 (726)
T PRK09841 675 LNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 706 (726)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 68899999999999978997589998288656
No 24
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=98.88 E-value=5.8e-08 Score=76.18 Aligned_cols=38 Identities=34% Similarity=0.560 Sum_probs=35.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 12311354444424789999999852267426774345
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
.+|+|.|=-||||||+.+=+|..+.++|+||+++++|-
T Consensus 1 r~i~~~GKGGVGKTT~AaalA~~lA~~G~kVLlvstDP 38 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 98999689855489999999999996899499995898
No 25
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.81 E-value=6.3e-08 Score=75.97 Aligned_cols=137 Identities=23% Similarity=0.276 Sum_probs=90.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHH----HHHHHCCCCCCCCC---CCCCHHHH
Q ss_conf 231135444442478999999985226742677434---512456889999----97530353212235---86612454
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKI----WADRTSADFVCSEI---GSDAAALA 182 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D---tfR~aA~eQL~~----~a~~~~v~~~~~~~---~~dp~~v~ 182 (321)
||-+.||.|+||||-+.+|+.+|.++|++|+++|.| .|.-||+-.=|+ |+..-++-+-.... -...+..+
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 97625899787899999999999978983799996888786686203235453441579983686346666542046889
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEE
Q ss_conf 228999965148759986543332115778999989987630222343011231023352257789998764358-9769
Q gi|254780709|r 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-TTGL 261 (321)
Q Consensus 183 ~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~-~~g~ 261 (321)
++++...+..+||+|||.|.|=.|....-. . ..|.+++|++...|-+. |++- .-.+. -|=+
T Consensus 81 ~~~i~~l~~~g~D~IiIETvGvGQse~~i~-------~--------~aD~~i~v~~p~~GD~i--Q~~K-~gi~e~aDl~ 142 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEVDIA-------S--------MADTTVVVMAPGAGDDI--QAIK-AGIMEIADIV 142 (148)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHH-------H--------HCCEEEEEECCCCCCHH--HHCC-CCHHHCCCEE
T ss_conf 999999997599989997487775602655-------4--------35669999636887377--6112-2852124699
Q ss_pred EEECCC
Q ss_conf 996545
Q gi|254780709|r 262 IMTKMD 267 (321)
Q Consensus 262 I~TKlD 267 (321)
++.|.|
T Consensus 143 vvNK~D 148 (148)
T cd03114 143 VVNKAD 148 (148)
T ss_pred EEECCC
T ss_conf 993789
No 26
>PHA02518 ParA-like protein; Provisional
Probab=98.80 E-value=2.6e-07 Score=71.58 Aligned_cols=145 Identities=18% Similarity=0.218 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf 4444247899999998522674267743451245688999997530--35321223-58661245422899996514875
Q gi|254780709|r 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT--SADFVCSE-IGSDAAALAYEAFKQAQAKKVDV 196 (321)
Q Consensus 120 nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~--~v~~~~~~-~~~dp~~v~~~a~~~a~~~~~Dv 196 (321)
=|||||||+.-||++|.++|++|+++-+|..+.+. .|.+.- +-|.+... .+. . ....+.. ...+||+
T Consensus 10 GGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~-----~w~~~r~~~~~~~~~~~~~~---~-~~~~l~~-~~~~yD~ 79 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLDPQGSST-----DWAEAREEGEPLIPVVRMGK---S-IRADLPK-VASGYDY 79 (211)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH-----HHHHHCCCCCCCCCHHHCCH---H-HHHHHHH-HCCCCCE
T ss_conf 99749999999999999789948999779996788-----99985226899740121367---7-9999997-4067888
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-------CCC-HHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9986543332115778999989987630222343011231023-------352-25778999876435897699965457
Q gi|254780709|r 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA-------TTG-QNALRQVEMFHAVAGTTGLIMTKMDG 268 (321)
Q Consensus 197 vliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda-------~~g-q~~~~~a~~F~~~~~~~g~I~TKlD~ 268 (321)
|||||+|++. .++... +. .-|.++.-+.. +.+ .+.+++++..++..+.-+++++..+.
T Consensus 80 viID~pp~~~---~~~~~a------l~-----aaD~vliP~~ps~~d~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 145 (211)
T PHA02518 80 VVVDGAPQDS---ELARAA------LR-----IADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred EEECCCCCCH---HHHHHH------HH-----HCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 9988999742---999999------99-----589699963786878999999999999999866567516888623586
Q ss_pred CCCH-HHHHHHHHHHCCCEEE
Q ss_conf 8706-9999999997698899
Q gi|254780709|r 269 TARG-GGLIPIVVTHKIPVYF 288 (321)
Q Consensus 269 ta~~-G~~ls~~~~~~~Pi~f 288 (321)
.++- -.+.......+.|+.-
T Consensus 146 ~~~~~~~~~~~l~~~~~~v~~ 166 (211)
T PHA02518 146 NTQLYREARKALAGYGLPILR 166 (211)
T ss_pred CCHHHHHHHHHHHHCCCCCCC
T ss_conf 656999999999986998106
No 27
>PRK11519 tyrosine kinase; Provisional
Probab=98.78 E-value=3.7e-07 Score=70.58 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=95.2
Q ss_pred CCCCCEEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH---------------------HHHH
Q ss_conf 6674123113-54444424789999999852267426774345124568899999---------------------7530
Q gi|254780709|r 108 SHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW---------------------ADRT 165 (321)
Q Consensus 108 ~~~p~vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~---------------------a~~~ 165 (321)
..++.+|++. -..|-||||+++-||.-+...|+||+||-||--|+.-.+.+..- ...-
T Consensus 523 ~~~~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~ 602 (720)
T PRK11519 523 QAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIA 602 (720)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHCCCCCCC
T ss_conf 88876799970899997899999999999837991999938777701677539999998599807999789970357989
Q ss_pred CCCCCC-CCCCCCCHHHHH----HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-
Q ss_conf 353212-235866124542----28999965148759986543332115778999989987630222343011231023-
Q gi|254780709|r 166 SADFVC-SEIGSDAAALAY----EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA- 239 (321)
Q Consensus 166 ~v~~~~-~~~~~dp~~v~~----~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda- 239 (321)
+.+|.+ +....+|+.+.- ..+-..-.+.||+|||||+==+..-..++ +.+ .-|-++||+-+
T Consensus 603 ~l~vl~~G~~~pnp~elL~s~~~~~ll~~l~~~yD~IIiDtpPv~~v~Da~~-----la~--------~aD~~l~Vvr~g 669 (720)
T PRK11519 603 NFDLIPRGQVPPNPSELLMSERFAELVAWASKNYDLVLIDTPPILAVTDAAI-----VGR--------HVGTTLMVARYA 669 (720)
T ss_pred CEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHH-----HHH--------HCCEEEEEEECC
T ss_conf 9899769999949899838759999999998529999993999652358999-----999--------789799999899
Q ss_pred CCCHHHHHHH-HHHHH-HCCCCEEEEECCCCC
Q ss_conf 3522577899-98764-358976999654578
Q gi|254780709|r 240 TTGQNALRQV-EMFHA-VAGTTGLIMTKMDGT 269 (321)
Q Consensus 240 ~~gq~~~~~a-~~F~~-~~~~~g~I~TKlD~t 269 (321)
.|-...+..+ +.+.+ .+.+.|+||.++|--
T Consensus 670 ~t~~~~v~~a~~~l~~~~~~v~G~VlN~v~~~ 701 (720)
T PRK11519 670 VNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 701 (720)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 57899999999999968997489998897666
No 28
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=98.78 E-value=2.7e-07 Score=71.52 Aligned_cols=38 Identities=39% Similarity=0.538 Sum_probs=36.0
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 12311354444424789999999852267426774345
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
.+|++.|--||||||+.|=+|.++.+.|+||+++++|.
T Consensus 2 r~i~~~GKGGVGKTT~AaA~A~~~A~~G~rvLlvStDP 39 (304)
T pfam02374 2 RWIFFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTDP 39 (304)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 19999579857489999999999995899299994697
No 29
>pfam02881 SRP54_N SRP54-type protein, helical bundle domain.
Probab=98.78 E-value=5.4e-08 Score=76.43 Aligned_cols=76 Identities=30% Similarity=0.413 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHH
Q ss_conf 99999999999999999860567789999999999999738898999999999998751278998-99999999987
Q gi|254780709|r 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-QRVLYDVSELI 92 (321)
Q Consensus 17 Lk~gL~kt~~~L~~~l~~l~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~-~~i~~~l~~~L 92 (321)
|++||.+++++|++.+.+++.+.+..+++|++||++||+||||++++++|++++++....+.++. +.+...+++.|
T Consensus 1 l~~~l~kt~~~l~~~~~~~~~~~~~i~~~l~ele~~Li~aDvg~~~~~~ii~~l~~~~~~~~~~~~~~i~~~l~e~L 77 (77)
T pfam02881 1 LKEGLSKTRSKLGGKIKDLFLGEKKIDELLEELEEALLEADVGVETTEKIIERLKELVGRKGLSDPEEIKKALKEEL 77 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 91268898999999999998489860899999999999812468999999999999998717999999999999769
No 30
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=98.73 E-value=3.1e-07 Score=71.11 Aligned_cols=144 Identities=19% Similarity=0.255 Sum_probs=75.6
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC---------HHHH------HH-HHHHHHHHCCCCC------
Q ss_conf 231135444442478999999985226742677434512---------4568------89-9999753035321------
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR---------SAAI------DQ-LKIWADRTSADFV------ 170 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR---------~aA~------eQ-L~~~a~~~~v~~~------ 170 (321)
++++.|-=||||||+.+-||..+.++|+||+++++|--+ ..+. |. ...|.........
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~~L~~~~~~~~~e~~~~~~~~~v~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98997899661999999999999968994999958987665323479865135888766679999875016665333110
Q ss_pred ------CCCCCCCCH----HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE--EEEECC
Q ss_conf ------223586612----45422899996514875998654333211577899998998763022234301--123102
Q gi|254780709|r 171 ------CSEIGSDAA----ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS--VLQVLD 238 (321)
Q Consensus 171 ------~~~~~~dp~----~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~--~~lVld 238 (321)
......-|. .......+.....+||+|+||||==-|.=.-|+.++ +. .|.. .++|.-
T Consensus 81 ~~~~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpPTGhtlrlL~~~~------L~-----d~~~t~~~lVt~ 149 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVREL------LT-----DPERTSFRLVTL 149 (217)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH------HC-----CCCCCEEEEEEC
T ss_conf 0114567776159978999999999999854899889982898556999867887------24-----888767999957
Q ss_pred C--CCCHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 3--352257789998764-3589769996545
Q gi|254780709|r 239 A--TTGQNALRQVEMFHA-VAGTTGLIMTKMD 267 (321)
Q Consensus 239 a--~~gq~~~~~a~~F~~-~~~~~g~I~TKlD 267 (321)
+ +.=.++.+-...+++ -+++.++|+.++=
T Consensus 150 Pe~~~~~et~r~~~~L~~~gi~v~~vVvN~v~ 181 (217)
T cd02035 150 PEKLPLYETERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 76217999999999999779988989895882
No 31
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=98.73 E-value=6.6e-08 Score=75.79 Aligned_cols=159 Identities=19% Similarity=0.257 Sum_probs=89.7
Q ss_pred EEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---HHCC--CCCCCCCCCCCHHHHHHHH
Q ss_conf 23113-5444442478999999985226742677434512456889999975---3035--3212235866124542289
Q gi|254780709|r 113 VILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---RTSA--DFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 113 vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~---~~~v--~~~~~~~~~dp~~v~~~a~ 186 (321)
||.|+ .=-|+||||++.-||..+..+|++|+++-+|-.|. +..|.+ +-+. |.. .....+..+...+.+
T Consensus 3 vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s-----~~~W~~~a~~~~~~~~~~-~v~~~~~~~~l~~~~ 76 (231)
T pfam07015 3 LITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRP-----LTKWRENALRKGTWDPAC-EIFNADELPLLEQAY 76 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-----HHHHHHHHHHCCCCCCCC-CEECCCCHHHHHHHH
T ss_conf 79996179986599999999999996899599996899868-----899999876468888765-222056601589999
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-CCCHHH------HH----HHHHHHHH
Q ss_conf 99965148759986543332115778999989987630222343011231023-352257------78----99987643
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA-TTGQNA------LR----QVEMFHAV 255 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda-~~gq~~------~~----~a~~F~~~ 255 (321)
+.+..++||+|+|||+|+... ++.- ++.. -|.++ +.. -+..|+ +. +.+.+...
T Consensus 77 ~~~~~~~yD~VIIDtpg~~s~---~~~~------AI~~-----ADlVL--IP~qpSplD~~~a~~t~~~i~~~~~~~~~~ 140 (231)
T pfam07015 77 EHAEGSGFDYALADTHGGSSE---LNNT------IIAS-----SDLLL--IPTMLTPLDIDEALATYRYVIELLLTENLA 140 (231)
T ss_pred HHHHHCCCCEEEECCCCCCCH---HHHH------HHHH-----CCEEE--ECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 988657999899839985758---9999------9997-----89899--778998233999999999999999973789
Q ss_pred CCCCEEEEECCCCCCCHH--HHHHHHHHHCCCEEEEECCCCC
Q ss_conf 589769996545787069--9999999976988999758981
Q gi|254780709|r 256 AGTTGLIMTKMDGTARGG--GLIPIVVTHKIPVYFLGVGEGI 295 (321)
Q Consensus 256 ~~~~g~I~TKlD~ta~~G--~~ls~~~~~~~Pi~fig~Ge~i 295 (321)
+| ..+++|++-....-. ..+.-..+ ++|+.=...+|+-
T Consensus 141 ip-~avl~tRv~~~~~~~~~~~i~e~le-~lpvl~t~i~eR~ 180 (231)
T pfam07015 141 IP-TAILRQRVPVGRLTSSQRFCSDMLE-QLPVFDCPMHERD 180 (231)
T ss_pred CC-EEEEEEECCCCCCCHHHHHHHHHHH-CCCCCCCCCCCHH
T ss_conf 98-0334551140002178999999996-4985435420289
No 32
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=98.69 E-value=1.2e-06 Score=66.94 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=95.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-----------H-HHHHHHH--HHH-----------CC
Q ss_conf 231135444442478999999985226742677434512456-----------8-8999997--530-----------35
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA-----------I-DQLKIWA--DRT-----------SA 167 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA-----------~-eQL~~~a--~~~-----------~v 167 (321)
.|.+.|==|||||||.+-||+-+.+.|+||+++-||..-... + +-+..+. +.. |+
T Consensus 2 ~iaiyGKGGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~gv 81 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGGV 81 (212)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCE
T ss_conf 59998898356877899999999986996999903899873303119977871999987527866445667899668870
Q ss_pred CCCCCCCCCCCHHH------HHHHHHHH-----HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 32122358661245------42289999-----65148759986543332115778999989987630222343011231
Q gi|254780709|r 168 DFVCSEIGSDAAAL------AYEAFKQA-----QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 (321)
Q Consensus 168 ~~~~~~~~~dp~~v------~~~a~~~a-----~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lV 236 (321)
.++. .+..++.+ .-.+++.. ...+||+||||+-|-..-+.=.| -+ . ...-+++++|
T Consensus 82 ~~ve--aggp~~g~~~ag~~i~~~~~ll~~~~~~~~~~D~IliD~lGdvv~~gf~~-pi---~-------~~~Ad~vlIv 148 (212)
T cd02117 82 KCVE--SGGPEPGVGCAGRGVITAVNLLEKEGFAEDDLDVVLYDVLGDVVCGGFAM-PI---R-------EGKADEIYIV 148 (212)
T ss_pred EEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCC-CC---C-------CCCCCEEEEE
T ss_conf 8998--89977676545411788999999741002579999996588540356334-32---1-------1668889998
Q ss_pred CCCC----CC-HHHHHHHHHHHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 0233----52-2577899987643--58976999654578706999999999769889
Q gi|254780709|r 237 LDAT----TG-QNALRQVEMFHAV--AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 (321)
Q Consensus 237 lda~----~g-q~~~~~a~~F~~~--~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~ 287 (321)
...- ++ .+.++-++.|.+. +.+.|+|.++.|....-..+=-++..++.|+.
T Consensus 149 tt~E~~Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~~~~~~i~~f~~~~g~~vl 206 (212)
T cd02117 149 TSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVI 206 (212)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 0693578898899999999997367981489998467888649999999998399189
No 33
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=98.68 E-value=1.1e-07 Score=74.37 Aligned_cols=160 Identities=19% Similarity=0.185 Sum_probs=89.0
Q ss_pred EEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---HHCC--CCCCCCCCCCCHHHHHHHH
Q ss_conf 23113-5444442478999999985226742677434512456889999975---3035--3212235866124542289
Q gi|254780709|r 113 VILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---RTSA--DFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 113 vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~---~~~v--~~~~~~~~~dp~~v~~~a~ 186 (321)
||.|+ .=-|+||||.+.-||..+...|++|+++-+|-.+. +..|.+ +-+. +.... ...+..+...+++
T Consensus 3 vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s-----~~~W~e~a~~~~~~~~~~~v-~~~~~~~~l~~~~ 76 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP-----LTRWKENALRSNTWDPACEV-YAADELPLLEAAY 76 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-----HHHHHHHHHHCCCCCCCCCE-EECCCHHHHHHHH
T ss_conf 79996189987699999999999997899599996899868-----89999876525898877523-4056525789999
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH----------HHHHHHHHHC
Q ss_conf 999651487599865433321157789999899876302223430112310233522577----------8999876435
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL----------RQVEMFHAVA 256 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~----------~~a~~F~~~~ 256 (321)
+.+..++||+|||||+|+... ++...-.. -|.++.=+ .-+..|+- ++.+.++..+
T Consensus 77 e~~~~~~~D~VIIDtpg~~s~---~~~~Ai~~-----------ADLVLIP~-qPSp~D~~~a~~tv~~i~~~~~~~~~~i 141 (231)
T PRK13849 77 EDAELQGFDYALADTHGGSSE---LNNTIIAS-----------SNLLLIPT-MLTPLDIDEALSTYRYVIELLLSENLAI 141 (231)
T ss_pred HHHHHCCCCEEEECCCCCCCH---HHHHHHHH-----------CCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 887536998899818997758---99999997-----------89899779-9986679999999999999999728788
Q ss_pred CCCEEEEECCCCC--CCHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 8976999654578--70699999999976988999758981
Q gi|254780709|r 257 GTTGLIMTKMDGT--ARGGGLIPIVVTHKIPVYFLGVGEGI 295 (321)
Q Consensus 257 ~~~g~I~TKlD~t--a~~G~~ls~~~~~~~Pi~fig~Ge~i 295 (321)
+. .+++|+.-.. .+--..+.-.. .++|+.=....|+-
T Consensus 142 p~-~vlltRv~a~~~t~~~~~i~~~l-e~lPvl~T~i~eR~ 180 (231)
T PRK13849 142 PT-AILRQRVPVGRLTTSQRAMSDML-ESLPVVDSPMHERD 180 (231)
T ss_pred CE-EEEEEECCHHHHCHHHHHHHHHH-HCCCCCCCCCHHHH
T ss_conf 65-66654050454068899999999-62995555302279
No 34
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=98.68 E-value=2.1e-06 Score=65.20 Aligned_cols=173 Identities=22% Similarity=0.263 Sum_probs=109.6
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH---HHH----HHHHHHHHHHCCCCCCCCCCCC---
Q ss_conf 667412311354444424789999999852267426774345124---568----8999997530353212235866---
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAI----DQLKIWADRTSADFVCSEIGSD--- 177 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~---aA~----eQL~~~a~~~~v~~~~~~~~~d--- 177 (321)
.++.++|-+.||.|+||.|.+..|+.+|..+|++|+++|.|.-.+ ||+ --+..++..-++-+-+......
T Consensus 46 ~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lgg 125 (325)
T PRK09435 46 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 125 (325)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 79825997427999868899999999999679858999978999988861010388887614799848840677888677
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-C
Q ss_conf 124542289999651487599865433321157789999899876302223430112310233522577899987643-5
Q gi|254780709|r 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-A 256 (321)
Q Consensus 178 p~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~-~ 256 (321)
.+.-..+++.-+..-+||+|||-|.|=-|.....+ .+ .|-+++|+-.-.| |.+. ..+.- .
T Consensus 126 ~~~~~~~~~~~~~a~g~d~i~iETvGvGQ~e~~v~-------~~--------~d~~~~~~~p~~G-D~~Q---~~K~GIm 186 (325)
T PRK09435 126 VARKTRETMLLCEAAGFDVILVETVGVGQSETAVA-------GM--------VDFFLLLQLPGAG-DELQ---GIKKGIM 186 (325)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH-------HH--------CCEEEEEECCCCC-CHHH---HHHHHHH
T ss_conf 33549999999997799989997067771488998-------74--------2668888358876-0889---9886577
Q ss_pred C-CCEEEEECCCCCCCHHHHHHHHHH-------------HCCCEEEEEC--CCCCCCCC
Q ss_conf 8-976999654578706999999999-------------7698899975--89813255
Q gi|254780709|r 257 G-TTGLIMTKMDGTARGGGLIPIVVT-------------HKIPVYFLGV--GEGINDLE 299 (321)
Q Consensus 257 ~-~~g~I~TKlD~ta~~G~~ls~~~~-------------~~~Pi~fig~--Ge~i~Dl~ 299 (321)
. -|-++++|.|++-+.++--..... ..-||.-+.. |+.+++|-
T Consensus 187 EiaDi~vVNKaDgd~~~~A~~t~~e~~~aL~l~~~~~~~W~ppVl~~SA~~g~GI~eL~ 245 (325)
T PRK09435 187 ELADLIVINKADGDNHTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDELW 245 (325)
T ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 50426899776755658999999999999860788789999998999815899879999
No 35
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=98.67 E-value=9.8e-07 Score=67.57 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=84.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH----------------------HHHH-------HC
Q ss_conf 135444442478999999985226742677434512456889999----------------------9753-------03
Q gi|254780709|r 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI----------------------WADR-------TS 166 (321)
Q Consensus 116 ~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~----------------------~a~~-------~~ 166 (321)
.-|==||||||+++=||+.+.++|+||+++-+|..-+.+. .+-. .... -+
T Consensus 4 ~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (212)
T pfam01656 4 AGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTS-SLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNLDP 82 (212)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCCCC
T ss_conf 7689980699999999999997899789983899996258-865876434444441010112100245642224555587
Q ss_pred CCCCCCCC---CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-
Q ss_conf 53212235---86612454228999965148759986543332115778999989987630222343011231023352-
Q gi|254780709|r 167 ADFVCSEI---GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG- 242 (321)
Q Consensus 167 v~~~~~~~---~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g- 242 (321)
+.+..... ..+...............+||+|+|||++-... ..+.-| . .++.++.|.....-
T Consensus 83 l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~--~~~~al-------~-----~ad~vivv~~p~~~s 148 (212)
T pfam01656 83 LLLIPSNLSLANFESELILEGGEEGLIKLAYDYVIIDGAPGLGE--LTANAL-------V-----AADILVVPIEPEGVA 148 (212)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH--HHHHHH-------H-----CCCEEEEEECCCHHH
T ss_conf 46533501566777777999999876660499899947997559--999999-------8-----399899994897699
Q ss_pred -HHHHHHHHHHHHH-CCCCEEEEECCCCCCCHH---HHHHHHHHHCCCEE
Q ss_conf -2577899987643-589769996545787069---99999999769889
Q gi|254780709|r 243 -QNALRQVEMFHAV-AGTTGLIMTKMDGTARGG---GLIPIVVTHKIPVY 287 (321)
Q Consensus 243 -q~~~~~a~~F~~~-~~~~g~I~TKlD~ta~~G---~~ls~~~~~~~Pi~ 287 (321)
+++....+.+.+. +++-|+|++|.|....-- .+..+...++.|..
T Consensus 149 l~~~~~l~~~~~~l~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (212)
T pfam01656 149 VLGAQRLLELVERLGLKILGVVLNKVDRGDERHLDKEIEALERKTGIPVL 198 (212)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999985996229999148899836630789999999789975
No 36
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.63 E-value=1.1e-07 Score=74.15 Aligned_cols=172 Identities=26% Similarity=0.430 Sum_probs=125.7
Q ss_pred CCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC-C--CCHHHH
Q ss_conf 36674-1231135444442478999999985226742677434512456889999975303532122358-6--612454
Q gi|254780709|r 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-S--DAAALA 182 (321)
Q Consensus 107 ~~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~-~--dp~~v~ 182 (321)
..++| ..|-+.||.||||||-+-|+-..++.+ +++++|+.|.|.-.-.+.|+.. .++|++....| . .+++..
T Consensus 8 ~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~ 83 (202)
T COG0378 8 EKNRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMN 83 (202)
T ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEECEEECHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHH
T ss_conf 725864899961799867899999999999752-7768996404006559999737---798068740387658867889
Q ss_pred HHHHHHHHHH--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH--HHHHHHHCCC
Q ss_conf 2289999651--48759986543332115778999989987630222343011231023352257789--9987643589
Q gi|254780709|r 183 YEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ--VEMFHAVAGT 258 (321)
Q Consensus 183 ~~a~~~a~~~--~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~--a~~F~~~~~~ 258 (321)
..|++..... ..|+++|-++|-|-.-.. -+|. -+..+.|+|.+.|.+.-.- -..|. -
T Consensus 84 ~~ai~~l~~~~~~~Dll~iEs~GNL~~~~s--p~L~-------------d~~~v~VidvteGe~~P~K~gP~i~~----a 144 (202)
T COG0378 84 LEAIEELVLDFPDLDLLFIESVGNLVCPFS--PDLG-------------DHLRVVVIDVTEGEDIPRKGGPGIFK----A 144 (202)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCEECCCC--CCHH-------------HCEEEEEEECCCCCCCCCCCCCCEEE----E
T ss_conf 999999863177677899923764324468--0413-------------04699999878888876557996467----4
Q ss_pred CEEEEECCCCCCCHHHHHHHHH------HHCCCEEEEE--CCCCCCCCCCC
Q ss_conf 7699965457870699999999------9769889997--58981325557
Q gi|254780709|r 259 TGLIMTKMDGTARGGGLIPIVV------THKIPVYFLG--VGEGINDLEPF 301 (321)
Q Consensus 259 ~g~I~TKlD~ta~~G~~ls~~~------~~~~Pi~fig--~Ge~i~Dl~~f 301 (321)
+=+|+||.|=.+-.|+=+.++. .-+.||.|.. +||..+++-.|
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~ 195 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRF 195 (202)
T ss_pred EEEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 189985677387728669999999998499998899847878689999999
No 37
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=98.61 E-value=9.7e-07 Score=67.61 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=88.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH------------HHHHHHHH-------------HHHCC
Q ss_conf 231135444442478999999985226742677434512456------------88999997-------------53035
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA------------IDQLKIWA-------------DRTSA 167 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA------------~eQL~~~a-------------~~~~v 167 (321)
+|.+.|==|||||||.+-||.=+.+.|+||+++-+|.+=+.. .+-+..-+ ...++
T Consensus 2 ~iai~GKGGVGKTTtsvNLA~aLA~~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~~gv 81 (269)
T pfam00142 2 KIAIYGKGGIGKSTTSQNTSAALAEMGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGYGGI 81 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCCCCC
T ss_conf 58998999768899999999999987990999845899874144438988884787760467702240745013377872
Q ss_pred CCCCCCCCCCC----H-HHHHHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 32122358661----2-454228999965----14875998654333211577899998998763022234301123102
Q gi|254780709|r 168 DFVCSEIGSDA----A-ALAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 (321)
Q Consensus 168 ~~~~~~~~~dp----~-~v~~~a~~~a~~----~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVld 238 (321)
.++... +.++ . .-...+++..+. ..||++|||+.|=.+.+.-.|. +. ....+++++|..
T Consensus 82 ~~i~~~-~~e~~~~~~~~~~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~~~~----i~-------~~~A~~viiv~t 149 (269)
T pfam00142 82 RCVESG-GPEPGVGCAGRGVITAIDLLEELGAYDDLDFVLYDVLGDVVCGGFAMP----IR-------EGKAQEVYIVTS 149 (269)
T ss_pred EEEECC-CCCCCCCCCHHHHHHHHHHHHHHCCHHCCCEEEEECCCCEEECCCCCC----HH-------HCCCCEEEEEEC
T ss_conf 688689-986563211078999999999821021288898533674024340053----34-------435887999828
Q ss_pred CCC--CHHHHH---HHHHHHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 335--225778---99987643--58976999654578706999999999769889997
Q gi|254780709|r 239 ATT--GQNALR---QVEMFHAV--AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 239 a~~--gq~~~~---~a~~F~~~--~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig 290 (321)
.-- =+++.. ....+.+. +.+.|++.+.-..+..-+.+=.+...++.| |+|
T Consensus 150 ~E~~al~~a~~l~~~i~~~~~~~~~~i~giv~n~~~~~~~~~~~~~~~~~~~~~--~lg 206 (269)
T pfam00142 150 GEMMALYAANNICKGILKYAKSGGVRLGGLICNSRKVDDERELIDAFAEALGTQ--MIH 206 (269)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC--EEE
T ss_conf 947899999999999999850579627899826865411579999999981994--799
No 38
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=98.58 E-value=7.4e-06 Score=61.41 Aligned_cols=172 Identities=24% Similarity=0.262 Sum_probs=106.3
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC---HHHH----HHHHHHHHHHCCCCCCCCCCCC---
Q ss_conf 66741231135444442478999999985226742677434512---4568----8999997530353212235866---
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR---SAAI----DQLKIWADRTSADFVCSEIGSD--- 177 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR---~aA~----eQL~~~a~~~~v~~~~~~~~~d--- 177 (321)
.++-.+|-+.||.|+||.|-+.+|+.++..+|++|+++|.|.-. =||+ --+..++..-++-+-+.+....
T Consensus 26 ~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGG 105 (267)
T pfam03308 26 TGRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGG 105 (267)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 59955998768998879999999999999689868999978999888863001077776505899858864577888887
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-C
Q ss_conf 124542289999651487599865433321157789999899876302223430112310233522577899987643-5
Q gi|254780709|r 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-A 256 (321)
Q Consensus 178 p~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~-~ 256 (321)
.+.-.++++.-+..-+||+|||-|.|=-|....- .++ .|-++||+-.-.| |.+ +..+.- .
T Consensus 106 ls~~t~~~i~lleaaGfD~IivETVGVGQsE~~v-------~~~--------aD~~llv~~Pg~G-Dei---Q~iKaGIm 166 (267)
T pfam03308 106 LSRATREAILLLDAAGFDVIIIETVGVGQSEVDI-------ANM--------ADTFVLVTIPGGG-DDL---QGIKAGLM 166 (267)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH-------HHH--------CCEEEEEECCCCC-HHH---HHHHHHHH
T ss_conf 1476999999999779999999247777530355-------541--------5768999558876-088---89875376
Q ss_pred C-CCEEEEECCCCCCCHHHHHHH---HHH----------HCCCEEEEEC--CCCCCCCCCC
Q ss_conf 8-976999654578706999999---999----------7698899975--8981325557
Q gi|254780709|r 257 G-TTGLIMTKMDGTARGGGLIPI---VVT----------HKIPVYFLGV--GEGINDLEPF 301 (321)
Q Consensus 257 ~-~~g~I~TKlD~ta~~G~~ls~---~~~----------~~~Pi~fig~--Ge~i~Dl~~f 301 (321)
. -|-++++|.|. .|+-... ... ..-||.-+.. |+.+++|-..
T Consensus 167 EiaDi~vVNKaD~---~~A~~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~ 224 (267)
T pfam03308 167 EIADIYVVNKADL---PGAERTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDA 224 (267)
T ss_pred HHCCEEEEECCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 5354899966764---769999999999985179877899999899874788999999999
No 39
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.58 E-value=5.5e-07 Score=69.36 Aligned_cols=97 Identities=27% Similarity=0.291 Sum_probs=70.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
+..++++|++|+||||.+.+||+.+...+..|..+++++++.....+.. .....................+.++
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH------HHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9789999999702999999999872668996899875998988898765------3000112210519999999999998
Q ss_pred HHCCCEEEEECCCCCCCHHHHHH
Q ss_conf 51487599865433321157789
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMA 213 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~ 213 (321)
...+++|+||-++++........
T Consensus 76 ~~~~~viiiDei~~~~~~~~~~~ 98 (148)
T smart00382 76 KLKPDVLILDEITSLLDAEQEAL 98 (148)
T ss_pred HCCCCEEEEECCHHHCCCCCHHH
T ss_conf 44998999827502147620799
No 40
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.53 E-value=3.6e-06 Score=63.65 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=81.7
Q ss_pred EEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH---------H----------HHHH--HHHHHCCCCC
Q ss_conf 23113-54444424789999999852267426774345124568---------8----------9999--9753035321
Q gi|254780709|r 113 VILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI---------D----------QLKI--WADRTSADFV 170 (321)
Q Consensus 113 vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~---------e----------QL~~--~a~~~~v~~~ 170 (321)
+|.++ +==|||||||+.-||+.+.+.|+||++|-+|....... + .++. +-...|+.++
T Consensus 3 iIav~n~KGGVGKTT~avNLA~~La~~G~rVLlIDlDpQ~~l~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 82 (246)
T TIGR03371 3 VIAIVGIKGGVGRTTLTAALASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLAGEDWRAAAYRSSDGVLFL 82 (246)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHCCCCHHHHHEECCCCEEEE
T ss_conf 99997599985499999999999996899789997599985032248887534569999827998889525578982897
Q ss_pred CCCC----------CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 2235----------866124542289999651487599865433321157789999899876302223430112310233
Q gi|254780709|r 171 CSEI----------GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 (321)
Q Consensus 171 ~~~~----------~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~ 240 (321)
.... ..++. ...+.+.......||+|||||+.-+.. -.+. ++. +.+.++.++.+.
T Consensus 83 p~~~~~~~~~~~~~~~~~~-~l~~~l~~l~~~~~D~viiD~pp~l~~--~~~~-------al~-----aad~vlipv~~~ 147 (246)
T TIGR03371 83 PYGTLSADEREAYQAHDAG-WLARLLQQLDLAARDWVLIDLPRGPSP--ITDQ-------ALA-----AADLVLVVVNAD 147 (246)
T ss_pred ECCCCCHHHHHHHCCCCHH-HHHHHHHHHCCCCCCEEEEECCCCCCH--HHHH-------HHH-----HCCEEEEEECCC
T ss_conf 0898477789876044789-999999863036798899948998749--9999-------999-----889479981899
Q ss_pred C-CHHHHHH-H---HHHHHHCCCCEEEEECCCCCCCHHH-HHHHH-HHHCCCE
Q ss_conf 5-2257789-9---9876435897699965457870699-99999-9976988
Q gi|254780709|r 241 T-GQNALRQ-V---EMFHAVAGTTGLIMTKMDGTARGGG-LIPIV-VTHKIPV 286 (321)
Q Consensus 241 ~-gq~~~~~-a---~~F~~~~~~~g~I~TKlD~ta~~G~-~ls~~-~~~~~Pi 286 (321)
. ......+ . ..+......-+++++++|...+... ++... ..++.|+
T Consensus 148 ~~s~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~l~~~~~~~~ 200 (246)
T TIGR03371 148 AACYATLHQLALALLARSVPPDGIHYLINQFQPARQLSRDVRAVLRATLGSRL 200 (246)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 89999999999999984277675178863026401589999999999749881
No 41
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=98.52 E-value=7.4e-06 Score=61.42 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=81.7
Q ss_pred CCCCCEEECCCC-CCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHH------------HH----HHHHH-----
Q ss_conf 667412311354-444424789999999852-26742677434512456889------------99----99753-----
Q gi|254780709|r 108 SHRPHVILVVGV-NGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQ------------LK----IWADR----- 164 (321)
Q Consensus 108 ~~~p~vil~vG~-nG~GKTTT~aKLA~~~~~-~g~kV~lva~DtfR~aA~eQ------------L~----~~a~~----- 164 (321)
..++++|++..+ .|.||||+++-||.-+.. -|++|+||-||..|+.-... |. .|.+.
T Consensus 32 ~~~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDlr~p~l~~~l~~~~~~Gl~d~L~~~~~~l~~~i~~~~ 111 (207)
T TIGR03018 32 KKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTN 111 (207)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHCCCCCCHHHHEECCC
T ss_conf 67880999978999998899999999999972498599995357899710013889999856774389987567234268
Q ss_pred -HCCCCCCC-CCCCCCHHHH----HHHHHHHHHHCCC--EEEEECCCCCCCHH-HHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf -03532122-3586612454----2289999651487--59986543332115-77899998998763022234301123
Q gi|254780709|r 165 -TSADFVCS-EIGSDAAALA----YEAFKQAQAKKVD--VLIIDTAGRLHNNS-ILMAGIGKMIRVLKRLDPHAPHSVLQ 235 (321)
Q Consensus 165 -~~v~~~~~-~~~~dp~~v~----~~a~~~a~~~~~D--vvliDTAGR~~~~~-~lm~EL~ki~~v~~~~~~~~p~~~~l 235 (321)
-++.++.. ....+|..+. ++.+-..-.+.|| +|||||+==+.... ..+... -|-++|
T Consensus 112 ~~~l~vlpag~~~~~~~~ll~s~~~~~li~~lr~~yd~~~VIiDtPPvl~~~Da~~la~~--------------~D~vll 177 (207)
T TIGR03018 112 IGRLSLLPAGRRHPNPTELLASQRMRSLLHELARRYPDRIIIIDTPPLLVFSEARALARL--------------VGQIVL 177 (207)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH--------------CCEEEE
T ss_conf 875557516898996676542699999999999737965799838962232369999996--------------896999
Q ss_pred ECCC-CCCHHHHHH-HHHHHHHCCCCEEEE
Q ss_conf 1023-352257789-998764358976999
Q gi|254780709|r 236 VLDA-TTGQNALRQ-VEMFHAVAGTTGLIM 263 (321)
Q Consensus 236 Vlda-~~gq~~~~~-a~~F~~~~~~~g~I~ 263 (321)
|+.. .|..+.+.+ .+.+. ..++.|+|+
T Consensus 178 Vvr~~~t~~~~v~~a~~~L~-~~~vlG~Vl 206 (207)
T TIGR03018 178 VVEEGRTTQEAVKEALSALE-SCKVLGVVL 206 (207)
T ss_pred EEECCCCCHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 99799878999999999866-898069996
No 42
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=98.52 E-value=3.4e-06 Score=63.77 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=85.0
Q ss_pred CCCEEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH---------------HHH------HHCC
Q ss_conf 74123113-5444442478999999985226742677434512456889999---------------975------3035
Q gi|254780709|r 110 RPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI---------------WAD------RTSA 167 (321)
Q Consensus 110 ~p~vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~---------------~a~------~~~v 167 (321)
..+.++++ .-.|-||||++|-||.-|...|+||+||-||.-||.-..=+.. +.+ .-+.
T Consensus 102 ~~~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~RvLLVDaDLRrP~lh~~f~l~~~~GLs~vL~g~~~l~~i~~~~~~~nL 181 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENL 181 (274)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHCCCCCHHHEEECCCCCCE
T ss_conf 88389996899999899999999999996799199995888884477975999976878884599988990515898997
Q ss_pred CCCC-CCCCCCCHHHHH----HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-CC
Q ss_conf 3212-235866124542----28999965148759986543332115778999989987630222343011231023-35
Q gi|254780709|r 168 DFVC-SEIGSDAAALAY----EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA-TT 241 (321)
Q Consensus 168 ~~~~-~~~~~dp~~v~~----~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda-~~ 241 (321)
.+.. +....+|+.+.- ..+-..-.+.||+|||||+==+.....++ +.+ .-+-++||.-. .|
T Consensus 182 ~VLpaG~~ppnP~eLL~s~~~~~ll~~l~~~yD~IIiDTPPvl~~sDA~i-----la~--------~aDg~LlVvR~~~T 248 (274)
T TIGR03029 182 SVLPAGAIPPNPQELLARPAFTDLLNKVMGDYDVVIVDTPSAEHSSDAQI-----VAT--------RARGTLIVSRVNET 248 (274)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHH-----HHH--------HCCEEEEEEECCCC
T ss_conf 89969999989799873589999999998409999993898655434999-----998--------68979999968988
Q ss_pred CHHHH-HHHHHHHHH-CCCCEEEEEC
Q ss_conf 22577-899987643-5897699965
Q gi|254780709|r 242 GQNAL-RQVEMFHAV-AGTTGLIMTK 265 (321)
Q Consensus 242 gq~~~-~~a~~F~~~-~~~~g~I~TK 265 (321)
-...+ +-.+.+.+. +++-|+|+.|
T Consensus 249 ~~~~l~~a~~~L~~~g~~VlGvVLNq 274 (274)
T TIGR03029 249 RLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 89999999999997799668998487
No 43
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=98.51 E-value=6.3e-07 Score=68.94 Aligned_cols=85 Identities=24% Similarity=0.258 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCHHH--HHHHHHHHHHHCCCCCCCCC----CCCC-----HH----HHHH
Q ss_conf 44424789999999852267426774345-12456--88999997530353212235----8661-----24----5422
Q gi|254780709|r 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAA--IDQLKIWADRTSADFVCSEI----GSDA-----AA----LAYE 184 (321)
Q Consensus 121 G~GKTTT~aKLA~~~~~~g~kV~lva~Dt-fR~aA--~eQL~~~a~~~~v~~~~~~~----~~dp-----~~----v~~~ 184 (321)
|||||||+.-||..+...|++|++|-+|. .+... .+.=..|+++.++++-.... ..++ .. -..+
T Consensus 11 GvGKTTtavnLA~aLA~~G~rVllIDlDpqq~slt~~l~nr~~~~~~~~~~l~~P~~~~l~~~~~~~~~~~~~~~~~L~~ 90 (261)
T pfam09140 11 GSGKSTTAVHVAVALLYLGARVATIDLDLRQRTLTRYIENRAATAERTGLDLPVPKHLCLPDDVSEVFDGESADDARLEE 90 (261)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87299999999999998899789997999998512344303556551386534665344550677761345578999999
Q ss_pred HHHHHHHHCCCEEEEECCCCCC
Q ss_conf 8999965148759986543332
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTAGRLH 206 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTAGR~~ 206 (321)
++.. -..+||+|+|||.|.+.
T Consensus 91 al~~-l~~~yDfIlIDcPPsl~ 111 (261)
T pfam09140 91 AVAD-LEQDADFIVIDTPGSDS 111 (261)
T ss_pred HHHH-HHCCCCEEEEECCCCCC
T ss_conf 9999-87579999996998573
No 44
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=98.51 E-value=5.3e-06 Score=62.44 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=84.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH------------HHHHHHHHH------------HHCC
Q ss_conf 1231135444442478999999985226742677434512456------------889999975------------3035
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA------------IDQLKIWAD------------RTSA 167 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA------------~eQL~~~a~------------~~~v 167 (321)
++|.+.|==|||||||++-||+-|.+.|+||+++-+|..=+.. .+-|..-+. -.|+
T Consensus 2 r~Iai~GKGGVGKTTtavNLA~aLa~~GkkVlliDaDpq~~~t~~l~g~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~gv 81 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGFGGI 81 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHEECCCCCC
T ss_conf 58999799857789999999999998799499986579985134652998888289988752777653889613376770
Q ss_pred CCCCCCCCCCCH-H-----H--HHHHHHH--HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 321223586612-4-----5--4228999--9651487599865433321157789999899876302223430112310
Q gi|254780709|r 168 DFVCSEIGSDAA-A-----L--AYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 (321)
Q Consensus 168 ~~~~~~~~~dp~-~-----v--~~~a~~~--a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVl 237 (321)
.++.... ..|. . + ..+-++. +-..+||+|||||.|-.....-.| .+ . ....++++.|.
T Consensus 82 ~~ip~~~-~~~~~~~~gr~~~~~~~ll~~l~~~~~~~D~iliD~lg~~~~~~~~~-~i---~-------~~~ad~viiv~ 149 (270)
T cd02040 82 KCVESGG-PEPGVGCAGRGVITAINLLEELGAYEDDLDFVIYDVLGDVVCGGFAM-PI---R-------EGKAQEIYIVT 149 (270)
T ss_pred EEEECCC-CCCCCHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC-HH---H-------HCCCCEEEEEC
T ss_conf 6410599-64351212400788999999854344069889982356333212323-03---5-------53388799962
Q ss_pred CC----CCCH-HHHHHHHHHHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 23----3522-577899987643--58976999654578706999999999769889997
Q gi|254780709|r 238 DA----TTGQ-NALRQVEMFHAV--AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 238 da----~~gq-~~~~~a~~F~~~--~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig 290 (321)
.. ++|. +.++..+.|.+. ..+.|++.+..+.......+-.+...++.| |+|
T Consensus 150 t~e~~al~~~~~l~k~i~~~~~~~~~~l~gvv~~~~~~~~~~~~~~~~~~~~~~~--~l~ 207 (270)
T cd02040 150 SGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRNTDREDELIDAFAKRLGTQ--MIH 207 (270)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC--EEE
T ss_conf 8818999999999999999983469747999837866513789999999985995--287
No 45
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.49 E-value=8.8e-06 Score=60.88 Aligned_cols=147 Identities=24% Similarity=0.322 Sum_probs=93.0
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH---HHH--HH--HHHHHHHHCCCCCCCCCCCC-
Q ss_conf 13667412311354444424789999999852267426774345124---568--89--99997530353212235866-
Q gi|254780709|r 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAI--DQ--LKIWADRTSADFVCSEIGSD- 177 (321)
Q Consensus 106 ~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~---aA~--eQ--L~~~a~~~~v~~~~~~~~~d- 177 (321)
+..+++.+|=+.|+.|+||.|.+.+|...|...|++|+++|.|.-.+ ||+ +- .+.++..-|+-+-+.+...-
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 11799837873179988668899999999997796789999889999878530120766776446998178426877651
Q ss_pred --CHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf --124542289999651487599865433321157789999899876302223430112310233522577899987643
Q gi|254780709|r 178 --AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 (321)
Q Consensus 178 --p~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~ 255 (321)
.+.-..+++..+..-+||+|||-|.|=-|.+.. |.+. .|-+++|+-.-.| +..+.++.-
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~-------I~~~--------aDt~~~v~~pg~G----D~~Q~iK~G 186 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD-------IANM--------ADTFLVVMIPGAG----DDLQGIKAG 186 (323)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-------HHHH--------CCEEEEEECCCCC----CHHHHHHHH
T ss_conf 01668899999999861898899981478841557-------7652--------1668999657888----278888741
Q ss_pred -CC-CCEEEEECCCCCCCHHH
Q ss_conf -58-97699965457870699
Q gi|254780709|r 256 -AG-TTGLIMTKMDGTARGGG 274 (321)
Q Consensus 256 -~~-~~g~I~TKlD~ta~~G~ 274 (321)
.. -|=+++.|.| +.|+
T Consensus 187 imEiaDi~vINKaD---~~~A 204 (323)
T COG1703 187 IMEIADIIVINKAD---RKGA 204 (323)
T ss_pred HHHHHHEEEEECCC---HHHH
T ss_conf 46540335672567---2658
No 46
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=98.48 E-value=1.5e-05 Score=59.23 Aligned_cols=156 Identities=25% Similarity=0.282 Sum_probs=90.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-----------HHHHHHHHHHH---HH-----------HCC
Q ss_conf 231135444442478999999985226742677434512-----------45688999997---53-----------035
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-----------SAAIDQLKIWA---DR-----------TSA 167 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR-----------~aA~eQL~~~a---~~-----------~~v 167 (321)
+|.+.|=-|+|||||.+-|++-|.+.|+||++|-||.-. +--+|.|+... +. -|+
T Consensus 2 kiaiyGKGGIGKSTttaNl~aaLA~~G~kVl~IgcDpk~Dst~~L~g~~~~tvld~l~~~~~~~~~~~~~d~v~~g~~gv 81 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGGV 81 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCHHHHHHCCCCCC
T ss_conf 79997799657877899999999987995999778995155675269886839999986088666414778753076784
Q ss_pred CCCCCCCCCCCH---------HHHHHHHHHHH-HHCCCEEEEECCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 321223586612---------45422899996-5148759986543332--11577899998998763022234301123
Q gi|254780709|r 168 DFVCSEIGSDAA---------ALAYEAFKQAQ-AKKVDVLIIDTAGRLH--NNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 (321)
Q Consensus 168 ~~~~~~~~~dp~---------~v~~~a~~~a~-~~~~DvvliDTAGR~~--~~~~lm~EL~ki~~v~~~~~~~~p~~~~l 235 (321)
.++ +.|.-++ ..+++-++... .+.||+|++|+.|--- --.+-+ ..-++++.
T Consensus 82 ~cv--EaGgP~pg~Gcagrgi~~~~~lL~~l~~~~~~D~Vl~DvlgdVvcgGFa~pi---------------~~Ad~~~i 144 (267)
T cd02032 82 DCV--EAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGGFAAPL---------------NYADYALI 144 (267)
T ss_pred EEE--ECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC---------------CCCCEEEE
T ss_conf 576--6589999988776404899999987166434778999536654456656761---------------00688999
Q ss_pred ECCCC--CCHHHHHHH---HHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 10233--522577899---98764--3589769996545787069999999997698899
Q gi|254780709|r 236 VLDAT--TGQNALRQV---EMFHA--VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 (321)
Q Consensus 236 Vlda~--~gq~~~~~a---~~F~~--~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~f 288 (321)
|-+.- .=.+|-+++ +.|.. .+.+.|+|..+.|+. ..+=-++..++.|+.-
T Consensus 145 VTs~e~~sl~aAn~I~~~i~~~~~~~~~rl~GlI~Nr~~~~---~~i~~fa~~lg~~lig 201 (267)
T cd02032 145 VTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT---DLIDKFVEAVGMPVLA 201 (267)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH---HHHHHHHHHHCCCEEE
T ss_conf 95671878999999999999975337976422787469857---8999999972994699
No 47
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.44 E-value=3e-06 Score=64.13 Aligned_cols=140 Identities=22% Similarity=0.300 Sum_probs=80.7
Q ss_pred EEC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 311-3544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 114 ILV-VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 114 il~-vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
|.+ .|==||||||+++-||..+.+.|++|+++-+|.. +....-.++.+ .++..-..+-+
T Consensus 2 Iav~s~KGGVGKTT~a~NLA~aLa~~g~~vllvD~D~~-------~~~l~~~~~~~-------~~~~~~~~~vl------ 61 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG-------LRNLDLILGLE-------NRVVYTLHDVL------ 61 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-------CCCCHHHCCCC-------CCCCCHHHCCC------
T ss_conf 89973999870999999999999977991899958999-------99836661765-------56653131126------
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC--CHHHHHHHHHHHHH-CCCCEEEEECCCCC
Q ss_conf 4875998654333211577899998998763022234301123102335--22577899987643-58976999654578
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT--GQNALRQVEMFHAV-AGTTGLIMTKMDGT 269 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~--gq~~~~~a~~F~~~-~~~~g~I~TKlD~t 269 (321)
.-|+|+|||...+.... ..-| . +.+++++|..... =.++....+.+++. .+.-|+|++|.+..
T Consensus 62 ~gD~viiD~ppg~~~~~--~~~l-------~-----~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~~~~ 127 (179)
T cd02036 62 AGDYILIDSPAGIERGF--ITAI-------A-----PADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CCCEEEEECCCCCCHHH--HHHH-------H-----HCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 69999997999988899--9999-------8-----46812563788588999999999999825996469998454676
Q ss_pred CC-HH-HHHHHHHHHCCCEE
Q ss_conf 70-69-99999999769889
Q gi|254780709|r 270 AR-GG-GLIPIVVTHKIPVY 287 (321)
Q Consensus 270 a~-~G-~~ls~~~~~~~Pi~ 287 (321)
.. .+ ..-.+...++.|+.
T Consensus 128 ~~~~~~~~~~~~~~l~~~vl 147 (179)
T cd02036 128 MVEGGDMVEDIEEILGVPLL 147 (179)
T ss_pred CCCHHHHHHHHHHHCCCCEE
T ss_conf 66367799999985599679
No 48
>PRK10818 cell division inhibitor MinD; Provisional
Probab=98.39 E-value=5.5e-06 Score=62.32 Aligned_cols=151 Identities=16% Similarity=0.240 Sum_probs=75.9
Q ss_pred EEEC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-----------HHHHHHHH------HH-------HCC
Q ss_conf 2311-35444442478999999985226742677434512456-----------88999997------53-------035
Q gi|254780709|r 113 VILV-VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA-----------IDQLKIWA------DR-------TSA 167 (321)
Q Consensus 113 vil~-vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA-----------~eQL~~~a------~~-------~~v 167 (321)
||.+ .|==|||||||+.-||..+.++|+||+++-+|..-+.. .+-..... +. -++
T Consensus 4 vIaV~s~KGGVGKTT~avNLA~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i~~~~~~~l 83 (270)
T PRK10818 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENL 83 (270)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHEEECCCCCCE
T ss_conf 99997899984189999999999997799689996899998887345767766666898836998588905446876997
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH----HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC--
Q ss_conf 3212235866124542289999----6514875998654333211577899998998763022234301123102335--
Q gi|254780709|r 168 DFVCSEIGSDAAALAYEAFKQA----QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT-- 241 (321)
Q Consensus 168 ~~~~~~~~~dp~~v~~~a~~~a----~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~-- 241 (321)
.+.......+...+..+++... +..+||+|||||+-=+. ..-+.-|. +.+++++|...-.
T Consensus 84 ~ilpa~~~~~~~~~~~~~~~~~l~~l~~~~yDyIiID~ppgl~--~~~~~al~------------aad~vlvv~tpe~~a 149 (270)
T PRK10818 84 YILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIE--TGALMALY------------FADEAIITTNPEVSS 149 (270)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC--HHHHHHHH------------HCCEEEEECCCCHHH
T ss_conf 9979996476755459999999997776599899988999866--89999998------------589689973897889
Q ss_pred CHHHHHHHHHHHHH---C-----CC-CEEEEECCCC-CCCHHHHHH
Q ss_conf 22577899987643---5-----89-7699965457-870699999
Q gi|254780709|r 242 GQNALRQVEMFHAV---A-----GT-TGLIMTKMDG-TARGGGLIP 277 (321)
Q Consensus 242 gq~~~~~a~~F~~~---~-----~~-~g~I~TKlD~-ta~~G~~ls 277 (321)
=.++....+.|+.. . ++ .++++|+.|. ....+..++
T Consensus 150 l~da~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (270)
T PRK10818 150 VRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLS 195 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEECHHHCCHHHHCC
T ss_conf 9879999999998777653352010012588424531232110012
No 49
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=98.38 E-value=5.9e-06 Score=62.12 Aligned_cols=145 Identities=21% Similarity=0.303 Sum_probs=92.3
Q ss_pred CCEEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH----------------------HHHHHHHHHH-HC
Q ss_conf 4123113-5444442478999999985226742677434512456----------------------8899999753-03
Q gi|254780709|r 111 PHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----------------------IDQLKIWADR-TS 166 (321)
Q Consensus 111 p~vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA----------------------~eQL~~~a~~-~~ 166 (321)
..++++. -=.|.|||||.+=+|.=|.+.|+|++||-+|+-.+-- .+|-=.--+. -+
T Consensus 19 ~K~l~itS~~~~eGKsT~S~NiA~~fAqaGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T~isen 98 (207)
T TIGR01007 19 IKVLLITSVKAGEGKSTTSANIAVSFAQAGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICETNISEN 98 (207)
T ss_pred EEEEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCCCC
T ss_conf 05899841105888624107889999856855888754658660367865888765633322145453334202654678
Q ss_pred CCCCCC-CCCCCCHHHH----HHHHHHHHHHCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-
Q ss_conf 532122-3586612454----2289999651487599865433-32115778999989987630222343011231023-
Q gi|254780709|r 167 ADFVCS-EIGSDAAALA----YEAFKQAQAKKVDVLIIDTAGR-LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA- 239 (321)
Q Consensus 167 v~~~~~-~~~~dp~~v~----~~a~~~a~~~~~DvvliDTAGR-~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda- 239 (321)
..|+.+ +-.=.|.++. |..|-..-.+.||+|||||+== .=+|...+ .+ ..+.++||++|
T Consensus 99 L~vi~sG~vPPNPt~LL~s~~F~~l~e~~~~~fD~iiiDTPPig~V~DAai~------a~--------~~d~~~LV~~A~ 164 (207)
T TIGR01007 99 LDVITSGPVPPNPTELLQSSNFKTLIETLRKYFDYIIIDTPPIGTVIDAAII------AR--------AVDASILVTDAG 164 (207)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH------HH--------HHCCEEEEEECC
T ss_conf 7275178878775478888999999999871688899951886667889999------98--------729779887225
Q ss_pred CCCHHHHHHHHHHHHHC--CCCEEEEECCCCC
Q ss_conf 35225778999876435--8976999654578
Q gi|254780709|r 240 TTGQNALRQVEMFHAVA--GTTGLIMTKMDGT 269 (321)
Q Consensus 240 ~~gq~~~~~a~~F~~~~--~~~g~I~TKlD~t 269 (321)
-+-.+.+.=|+.=-+.. .+=||||-|+|.+
T Consensus 165 ~~~k~~v~KAK~~LEq~G~~~LGvvLNK~d~s 196 (207)
T TIGR01007 165 KIKKREVKKAKEQLEQAGSKFLGVVLNKVDIS 196 (207)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 32646789999999861784115888882576
No 50
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=98.37 E-value=4.6e-06 Score=62.87 Aligned_cols=143 Identities=22% Similarity=0.274 Sum_probs=86.8
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH------HHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124------542289
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA------LAYEAF 186 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~------v~~~a~ 186 (321)
|+++.|.=|+||||.+-.|... .+.|++++++..|.-..+ +|.-. -..-+++++.-..|.-..+ .+.+++
T Consensus 2 v~iitGFLGsGKTTll~~ll~~-~~~~~~~avI~Ne~g~~~-iD~~l--l~~~~~~v~el~~GciCc~~~~d~~~~l~~l 77 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRD-NREGLKIAVIVNDFGETG-IDAEL--LRETGAEIVELNNGCICCTIREDLSMVLEAL 77 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHH-HHHHH--HHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 6999348878899999999984-448984799993365302-07999--8706961899748866454333699999999
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEEC
Q ss_conf 9996514875998654333211577899998998763022234301123102335225778999876435-897699965
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-GTTGLIMTK 265 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~-~~~g~I~TK 265 (321)
......++|+|+|-|.| +-.-.++++ +.. .-..+-++-|+||...++..+....|.+.+ --|-+|++|
T Consensus 78 ~~~~~~~~d~iiIE~sG-la~p~~i~~----~~~------~~~~~~~i~vvDa~~~~~~~~~~~~~~~Qi~~AD~vvlNK 146 (174)
T pfam02492 78 LELKLPRLDLLFIETTG-LACPAPVLD----LRS------DLGLDGVVTVVDVKNFTEGEDIPEKAPDQIAFADLIVINK 146 (174)
T ss_pred HHCCCCCCCEEEEECCC-CCCHHHHHH----HHH------CCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCEEEEEH
T ss_conf 85578999999995876-677077776----532------0265459999972343300200789999998769999846
Q ss_pred CCCCC
Q ss_conf 45787
Q gi|254780709|r 266 MDGTA 270 (321)
Q Consensus 266 lD~ta 270 (321)
.|--+
T Consensus 147 ~Dl~~ 151 (174)
T pfam02492 147 TDLAP 151 (174)
T ss_pred HHCCC
T ss_conf 65378
No 51
>PRK13768 GTPase; Provisional
Probab=98.37 E-value=4.5e-06 Score=62.94 Aligned_cols=170 Identities=21% Similarity=0.311 Sum_probs=93.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH--------HH------HHHHCCCCCCCCCCC
Q ss_conf 4123113544444247899999998522674267743451245688999--------99------753035321223586
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK--------IW------ADRTSADFVCSEIGS 176 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~--------~~------a~~~~v~~~~~~~~~ 176 (321)
++.++++||.||||||-|+.+..|+...|++|.+|..|. |+ |.+. .+ -+..+. +|.|
T Consensus 2 ~~~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDP---A~-e~~pY~~~iDIRd~i~~~dVM~~~~L----GPNG- 72 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDP---AV-EYLPYKPDIDVREYVSAREIMRKYGL----GPNG- 72 (253)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---CC-CCCCCCCCCCHHHHCCHHHHHHHHCC----CCCH-
T ss_conf 718999899999889999999999997699759997898---66-58999988637861789999988198----9646-
Q ss_pred CCHHHHHHHHHHHH-----------HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 61245422899996-----------5148759986543332115778999989987630222343011231023352257
Q gi|254780709|r 177 DAAALAYEAFKQAQ-----------AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 (321)
Q Consensus 177 dp~~v~~~a~~~a~-----------~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~ 245 (321)
++.+ +++++. ..+.|.+|+||.|-.-.-.. ..-+..|.+.+.+ ..+.-+.+++|+.--++.
T Consensus 73 ---ali~-~~e~l~~~~d~l~~~i~~~~~dY~i~D~PGQiElft~-~~~~~~i~~~L~~---~~~~~~v~l~D~~~~~~~ 144 (253)
T PRK13768 73 ---ALIA-SVDLLLTKAEEIKEEIERLDADYVLVDTPGQMELFAF-RESGRYLVEKLSS---GSKSLSVYLIDAVLAKDP 144 (253)
T ss_pred ---HHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEC-CHHHHHHHHHHHC---CCCEEEEEEECHHHHCCH
T ss_conf ---8999-9999999899999998515887599826874432223-4079999999863---686289998450563788
Q ss_pred HHH--------HHHHHHHCCCC-EEEEECCCCCCCH------------------------------HHHHHHHHHHCCCE
Q ss_conf 789--------99876435897-6999654578706------------------------------99999999976988
Q gi|254780709|r 246 LRQ--------VEMFHAVAGTT-GLIMTKMDGTARG------------------------------GGLIPIVVTHKIPV 286 (321)
Q Consensus 246 ~~~--------a~~F~~~~~~~-g~I~TKlD~ta~~------------------------------G~~ls~~~~~~~Pi 286 (321)
..- .-.++ +++- =.|+||.|=-.+- ..++.+......++
T Consensus 145 ~~fiS~~L~a~s~m~~--l~lP~inVlsK~Dll~~~~~~~i~~~~~D~~~l~~~l~~~~~~~~~l~~~l~~~l~e~~~~v 222 (253)
T PRK13768 145 SDFVSLLLLALSVQLR--LGLPQIPVLNKIDLLSEEELERIRKWLEDPETLLEELKLDKGVQGDLAEELLSALEESGIPV 222 (253)
T ss_pred HHHHHHHHHHHHHHHH--CCCCEEEEEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 7999999999999997--39997998676862783779999998629999999985061158999999999999846666
Q ss_pred EEEEC----CCCCCCCC
Q ss_conf 99975----89813255
Q gi|254780709|r 287 YFLGV----GEGINDLE 299 (321)
Q Consensus 287 ~fig~----Ge~i~Dl~ 299 (321)
.|++. ||.++|+-
T Consensus 223 ~~ipvS~~~~eg~~~l~ 239 (253)
T PRK13768 223 RVIPVSAKTGEGFEELY 239 (253)
T ss_pred CEEEEECCCCCCHHHHH
T ss_conf 52775689878799999
No 52
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.35 E-value=1.8e-05 Score=58.63 Aligned_cols=156 Identities=22% Similarity=0.231 Sum_probs=83.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCH-------------
Q ss_conf 311354444424789999999852267426774345124568899999753-035321223586612-------------
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-TSADFVCSEIGSDAA------------- 179 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~-~~v~~~~~~~~~dp~------------- 179 (321)
....|==||||||+.+-||..+ ++|+++-||.+-+...--|..-.+. ..+........-+|.
T Consensus 3 aV~SgKGGVGKTT~a~nLA~~l----~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (179)
T cd03110 3 AVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVT 78 (179)
T ss_pred EEEECCCCCHHHHHHHHHHHHC----CCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCCCHHHHHH
T ss_conf 9995899860999999999974----287199941899857777187656321223046533515066532351768899
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC--CHHHHHHHHHHHHH-C
Q ss_conf 45422899996514875998654333211577899998998763022234301123102335--22577899987643-5
Q gi|254780709|r 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT--GQNALRQVEMFHAV-A 256 (321)
Q Consensus 180 ~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~--gq~~~~~a~~F~~~-~ 256 (321)
....+.......++||+|+|||+--+. ...+.-+. .-+.+++|..... =.++.+.++.+++. +
T Consensus 79 ~~~~~~~~~~~~~~~D~viiD~Ppg~~--~~~~~al~------------~ad~~iiVttP~~~si~d~~r~i~l~~~~~~ 144 (179)
T cd03110 79 EVRKHAKEIAKAEGAELIIIDGPPGIG--CPVIASLT------------GADAALLVTEPTPSGLHDLERAVELVRHFGI 144 (179)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCC--HHHHHHHH------------CCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 999999998644379989981899975--78999997------------3994999819947899999999999998299
Q ss_pred CCCEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEE
Q ss_conf 8976999654578706-999999999769889997
Q gi|254780709|r 257 GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 257 ~~~g~I~TKlD~ta~~-G~~ls~~~~~~~Pi~fig 290 (321)
++ |+|+.|.|..... +.+-.++.++++| |+|
T Consensus 145 ~~-gvV~Nr~~~~~~~~~~i~~~~~~~~vp--~LG 176 (179)
T cd03110 145 PV-GVVINKYDLNDEIAEEIEDYCEEEGIP--ILG 176 (179)
T ss_pred CE-EEEEECCCCCCCCHHHHHHHHHHHCCC--EEE
T ss_conf 78-999968878876348999999980999--898
No 53
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=98.35 E-value=7.7e-06 Score=61.29 Aligned_cols=143 Identities=23% Similarity=0.312 Sum_probs=85.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 31135444442478999999985226742677434512456889999975303532-12235866124542289999651
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
....|--|+||||+.+-||..+.+.|++|+++-+|.|-+. +|. +.++. ......+-+....-.
T Consensus 3 ~v~s~kggvgkst~~~~la~~l~~~g~~v~~~d~di~gps-------------ip~~~rGp~---~~~~i~q~l~~~~w~ 66 (169)
T cd02037 3 AVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS-------------IPKMWRGPM---KMGAIKQFLTDVDWG 66 (169)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-------------CCEEEECHH---HHHHHHHHHHHCCCC
T ss_conf 9974999881999999999999987997899971379997-------------550120473---899999999852546
Q ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHHH-CCCCEEEEEC
Q ss_conf 4875998654-33321157789999899876302223430112310233522-----577899987643-5897699965
Q gi|254780709|r 193 KVDVLIIDTA-GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEMFHAV-AGTTGLIMTK 265 (321)
Q Consensus 193 ~~DvvliDTA-GR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~F~~~-~~~~g~I~TK 265 (321)
++|++||||. |=. |..+ .+.+.+ ..++.++| ||.| ++.+.++.|++. +++-|+|.-.
T Consensus 67 ~lDyLIID~PPGtg--D~~l-----t~~~~~------~~d~~IvV---TTP~~~s~~Da~r~i~~~~~~~i~i~GvVeNM 130 (169)
T cd02037 67 ELDYLVIDMPPGTG--DEHL-----TLAQSL------PIDGAVIV---TTPQEVALDDVRKAIDMFKKVNIPILGVVENM 130 (169)
T ss_pred CCCEEEEECCCCCC--HHHH-----HHHHHC------CCCCEEEE---ECCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 67889996899987--0778-----798750------56747999---46958899999999999997599707999879
Q ss_pred CC----C--C----CCHHHHHHHHHHHCCCEEEEE
Q ss_conf 45----7--8----706999999999769889997
Q gi|254780709|r 266 MD----G--T----ARGGGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 266 lD----~--t----a~~G~~ls~~~~~~~Pi~fig 290 (321)
-- . . -.-|.+-.++.++++| |+|
T Consensus 131 s~~~c~~c~~~~~ifg~~~~~~la~~~~i~--~Lg 163 (169)
T cd02037 131 SYFVCPHCGKKIYIFGKGGGEKLAEELGVP--LLG 163 (169)
T ss_pred CCCCCCCCCCEEECCCCCHHHHHHHHHCCC--EEE
T ss_conf 666079999735278884499999995999--898
No 54
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=98.33 E-value=2e-05 Score=58.44 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=97.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-----------HHHHHHHHHHHHH----------HCCCCCC
Q ss_conf 231135444442478999999985226742677434512-----------4568899999753----------0353212
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-----------SAAIDQLKIWADR----------TSADFVC 171 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR-----------~aA~eQL~~~a~~----------~~v~~~~ 171 (321)
-|.+-|=-|+|||||.+-||+-+. +|+||+++.||.-. +--.+.|+.+.+. -|+.++
T Consensus 4 ~iAiyGKGGIGKSTt~~NlaaalA-~g~rVl~igcDpk~dst~~L~G~~~ptvl~~l~~~~~~~~~dvv~~g~~gi~cv- 81 (264)
T PRK13231 4 KIAIYGKGGIGKSTTVSNMAAAYS-SDNSTLVIGCDPKADTTRTLVGKRIPTVLDTLKDNRQPELEDIIYEGYNNTLCV- 81 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHCCCCCCHHHHHHHCCCCCHHHHEEECCCCEEEE-
T ss_conf 899978985478889999999998-799779985688850246761999883889863127777656312178984997-
Q ss_pred CCCC-CCCH--------HHHHHHHHHHH--HHCCCEEEEECCCCC---CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 2358-6612--------45422899996--514875998654333---21157789999899876302223430112310
Q gi|254780709|r 172 SEIG-SDAA--------ALAYEAFKQAQ--AKKVDVLIIDTAGRL---HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 (321)
Q Consensus 172 ~~~~-~dp~--------~v~~~a~~~a~--~~~~DvvliDTAGR~---~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVl 237 (321)
+.| ..|. ..+++-++... ..++|+|++|+.|-. .....+ ....-+++++|.
T Consensus 82 -esGgpepg~gcagrgi~~~~~lLe~~~~~~~~~D~vl~Dvlgdvvcggfa~Pi--------------r~~~Adev~IVt 146 (264)
T PRK13231 82 -ESGGPEPGVGCAGRGVIVAMNLLEKLGVFDNDPDVVIYDVLGDVVCGGFSVPL--------------REDYADEVYIVT 146 (264)
T ss_pred -ECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEECCC--------------CCCCCCEEEEEE
T ss_conf -37998877665652176898999872642247987999435872056670455--------------426698899994
Q ss_pred CC--CCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 23--3522577899987643-58976999654578706999999999769889
Q gi|254780709|r 238 DA--TTGQNALRQVEMFHAV-AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 (321)
Q Consensus 238 da--~~gq~~~~~a~~F~~~-~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~ 287 (321)
++ +.=.+|-++++.+.++ ..+.|+|.+..+....-..+=..+..++.|+.
T Consensus 147 s~e~msLyaAnnI~~~i~~~~~rl~GiI~N~r~~~~e~~iv~~fa~~~g~~vl 199 (264)
T PRK13231 147 SGEYMSLYAANNIAKGIKKLKGKLGGIICNCRNVKNEVEIVSEFASLIGSRII 199 (264)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 78589999999999999995464420896068988779999999997199689
No 55
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.33 E-value=1.8e-06 Score=65.75 Aligned_cols=39 Identities=33% Similarity=0.627 Sum_probs=35.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 412311354444424789999999852267426774345
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
..+++|.|=-||||||+.|=+|.++...|++|++|++|.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 379999368854589999999999997599079998489
No 56
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=98.33 E-value=2.5e-07 Score=71.75 Aligned_cols=196 Identities=19% Similarity=0.252 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--CCCCCCCC
Q ss_conf 9999999986056778999999999999973889899999999999875127899899999999987852--01001210
Q gi|254780709|r 26 LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM--LMPLSKPF 103 (321)
Q Consensus 26 ~~L~~~l~~l~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~--L~~~~~~~ 103 (321)
+.+.+.+.++++.. .|..++++++. .+.|+++.+..- .++|-....+.-+..-++..+-..|-.+ |+ +..+.
T Consensus 45 ~~~~~l~~~~l~~t--h~~~~~~f~~~-~E~Dfs~~~~~~--~RfRvN~f~QRg~~a~vlR~ip~~Ip~fe~LG-LP~~v 118 (350)
T TIGR01420 45 EDTQKLLREILSST--HEKQREEFEEN-GELDFSFSLPGL--ARFRVNAFKQRGGVALVLRLIPSKIPTFEELG-LPRPV 118 (350)
T ss_pred HHHHHHHHHHCCCC--CHHHHHHHHHC-CCCCEEEEECCC--CEEEEHHHHHCCHHHHHHHHCCCCCCCHHHCC-CCHHH
T ss_conf 99999999863845--65777505650-664446630673--22122032350006423231153462166637-98789
Q ss_pred CCCC-CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 0013-667412311354444424789999999852267426774345124568899999753035321223586612454
Q gi|254780709|r 104 NWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 (321)
Q Consensus 104 ~~~~-~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~ 182 (321)
.... ..+--.||+.||||||||||+|=+=.|.-++.... ++|.= |-.+-.=..-..=+-.-+-|.|--+ .
T Consensus 119 ~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~H-IiTIE-------DPIEyvh~~~~sli~QREvG~DT~s-F 189 (350)
T TIGR01420 119 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNKAGH-IITIE-------DPIEYVHKNKRSLINQREVGLDTLS-F 189 (350)
T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCC-CEEEE-------CCEEEEECCCEEEEECCCCCCCHHH-H
T ss_conf 9999836699389876889867899999997874038888-25631-------7731410477024543624675457-9
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-HHHHHHHHHH
Q ss_conf 228999965148759986543332115778999989987630222343011231023352-2577899987
Q gi|254780709|r 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG-QNALRQVEMF 252 (321)
Q Consensus 183 ~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g-q~~~~~a~~F 252 (321)
.+|+.+|-.++=|||||= -|+-++-|.-++...... +||+ ||.. |+|+..+..+
T Consensus 190 ~~ALraALReDPDvILiG----------E~RD~ET~~~AL~AAETG-----HLV~-gTLHTnsA~~ti~RI 244 (350)
T TIGR01420 190 ANALRAALREDPDVILIG----------EMRDLETVELALTAAETG-----HLVF-GTLHTNSAAKTIERI 244 (350)
T ss_pred HHHHHHHHCCCCCEEEEE----------CCCCHHHHHHHHHHHHHC-----CHHH-HHHHHHHHHHHHHHH
T ss_conf 999768410289889982----------556278999999874213-----1567-666642388876777
No 57
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.31 E-value=0.00041 Score=49.15 Aligned_cols=132 Identities=23% Similarity=0.303 Sum_probs=88.0
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-----CCCC---CCCCCH--HHH
Q ss_conf 231135444442478999999985226742677434512456889999975303532-----1223---586612--454
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-----VCSE---IGSDAA--ALA 182 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-----~~~~---~~~dp~--~v~ 182 (321)
|+.++|-|||||||-+-|+..-. ..|.+..++.+-.-|+||+-=-+-.|+-+|.++ |... .-++-. ..+
T Consensus 91 Vvii~GeTGsGKTTQiPq~~le~-g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VGY~VRf~~~~s~~t~i~~~ 169 (1295)
T PRK11131 91 VVIVAGETGSGKTTQLPKICLEL-GRGIKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVKLM 169 (1295)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 69997689998788999999962-79999989977965999999999999981999899888894569887999779997
Q ss_pred HHHHHHHH------HHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 22899996------5148759986543-332115778999989987630222343011231023352257789998764
Q gi|254780709|r 183 YEAFKQAQ------AKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 (321)
Q Consensus 183 ~~a~~~a~------~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~ 254 (321)
-+++--.. ..+|++||||-|- |+-+-.-|+-=|+++. . ..|+..+.+++||. |+-.-++.|+.
T Consensus 170 TdGiLL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll---~----~R~dLKvIimSATi--d~e~fs~yF~~ 239 (1295)
T PRK11131 170 TDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELL---P----RRPDLKVIITSATI--DPERFSRHFNN 239 (1295)
T ss_pred CCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH---H----HCCCCEEEEECCCC--CHHHHHHHCCC
T ss_conf 65699998620998788777998685568801999999999998---3----39998899955868--97999965799
No 58
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=98.30 E-value=2.1e-05 Score=58.18 Aligned_cols=166 Identities=15% Similarity=0.232 Sum_probs=93.8
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH------------HHHHHHHHHHHCCC-C--------CC
Q ss_conf 231135444442478999999985226742677434512456------------88999997530353-2--------12
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA------------IDQLKIWADRTSAD-F--------VC 171 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA------------~eQL~~~a~~~~v~-~--------~~ 171 (321)
-|.+.|==|+|||||++-||+-+.+.|+||++|-||.---+- .+.|+..++...++ + ..
T Consensus 3 ~iaiyGKGGVGKSTtt~NLaAALA~~GkkVl~IgcDPk~dsT~~L~gg~~~~tvld~l~~~~~~~~ledvi~~g~~gi~c 82 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLQQKTVLDTLREEGEDVELEDIIKEGYGNTRC 82 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHEEECCCCEEE
T ss_conf 79997998554767899999999978997999898984536678738998997899998628776778944317898189
Q ss_pred CCCCC-CCH--------HHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 23586-612--------45422899996----514875998654333211577899998998763022234301123102
Q gi|254780709|r 172 SEIGS-DAA--------ALAYEAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 (321)
Q Consensus 172 ~~~~~-dp~--------~v~~~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVld 238 (321)
.+.+. .|. ..+++-++... ...+|+|++|..|=.--..--| - ......+++++|.+
T Consensus 83 veaggp~pg~gcagrgii~~~~~L~~l~~~~~~~~~DyVl~DvLGdvvcggFa~----p-------ir~~~A~eV~IVts 151 (274)
T PRK13235 83 TESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAM----P-------IRDGKAEEIYIVCS 151 (274)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC----C-------CCCCCCCEEEEEEC
T ss_conf 868998756675763152589999881775433577689981378531245115----5-------10065878999916
Q ss_pred CC-CC----HHHHHHHHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 33-52----257789998764--35897699965457870699999999976988999
Q gi|254780709|r 239 AT-TG----QNALRQVEMFHA--VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 (321)
Q Consensus 239 a~-~g----q~~~~~a~~F~~--~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fi 289 (321)
+- .- +|...-++.|.+ .+.+.|+|++.-+-+..-..+=.++..++.|+..+
T Consensus 152 ~E~~AL~aannI~k~i~~~~~~~~~~l~Gii~N~r~~~~~~~~v~~fa~~~g~~vi~~ 209 (274)
T PRK13235 152 GEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKVDNEREMIEELARKLGTQMIHF 209 (274)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 8368999999999999999743795488999736778757899999999749936997
No 59
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=98.27 E-value=1.4e-06 Score=66.49 Aligned_cols=47 Identities=36% Similarity=0.429 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 44442478999999985226742677434512456889999975303532122358661245422899996514875998
Q gi|254780709|r 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 (321)
Q Consensus 120 nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~Dvvli 199 (321)
=||||||++.-||+++.++|++|+++-+|.. ||+|+|
T Consensus 9 GGvGKtt~~~~la~~~a~~g~~vl~iD~DpQ-------------------------------------------yD~iiI 45 (104)
T cd02042 9 GGVGKTTTAVNLAAALARRGKRVLLIDLDPQ-------------------------------------------YDYIII 45 (104)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-------------------------------------------CCEEEE
T ss_conf 9876899999999999977992999977988-------------------------------------------888999
Q ss_pred ECCCCCCCHH
Q ss_conf 6543332115
Q gi|254780709|r 200 DTAGRLHNNS 209 (321)
Q Consensus 200 DTAGR~~~~~ 209 (321)
||+++.....
T Consensus 46 Dtpp~~~~~~ 55 (104)
T cd02042 46 DTPPSLGLLT 55 (104)
T ss_pred ECCCCCCHHH
T ss_conf 7949998999
No 60
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.26 E-value=3.3e-05 Score=56.86 Aligned_cols=124 Identities=20% Similarity=0.297 Sum_probs=81.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 13544444247899999998522674267743451245688999997530353212235866124542289999651487
Q gi|254780709|r 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 (321)
Q Consensus 116 ~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~D 195 (321)
..|--||||||.++-||..+.+.|++|+++-+|. |. + .-+||
T Consensus 5 ~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~D~----------------g~--------a--------------n~~~D 46 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL----------------GL--------A--------------NLDYD 46 (139)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC----------------CC--------C--------------CCCCC
T ss_conf 6499998399999999999997899699998989----------------99--------6--------------57999
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC--CCCHHHHHHHHHHHHHCCC--CEEEEECCCCCCC
Q ss_conf 59986543332115778999989987630222343011231023--3522577899987643589--7699965457870
Q gi|254780709|r 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA--TTGQNALRQVEMFHAVAGT--TGLIMTKMDGTAR 271 (321)
Q Consensus 196 vvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda--~~gq~~~~~a~~F~~~~~~--~g~I~TKlD~ta~ 271 (321)
+|||||+...+.+.. .-+. ..++.++|.-. +.=.|+..-.+..++..+. =.+|+.+..+.+.
T Consensus 47 ~viiD~~aG~~~~~~--~~~~------------~ad~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~s~~e 112 (139)
T cd02038 47 YIIIDTGAGISDNVL--DFFL------------AADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKE 112 (139)
T ss_pred EEEEECCCCCCHHHH--HHHH------------HCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
T ss_conf 999948999877899--9999------------58957999589706799999999999996399975999956899999
Q ss_pred HHHHHHH-----HHHHCCCEEEEEC
Q ss_conf 6999999-----9997698899975
Q gi|254780709|r 272 GGGLIPI-----VVTHKIPVYFLGV 291 (321)
Q Consensus 272 ~G~~ls~-----~~~~~~Pi~fig~ 291 (321)
+=..+.- ...+++++.|+|.
T Consensus 113 a~~~~~~l~~v~~kfL~v~l~~lG~ 137 (139)
T cd02038 113 GKKVFKRLSNVSNRFLGLSLDYLGF 137 (139)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 9999999999999980998310714
No 61
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=98.26 E-value=6e-05 Score=55.03 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=93.2
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHH------------HHHHHHHHH-H-----------H
Q ss_conf 412311354444424789999999852-26742677434512456------------889999975-3-----------0
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAA------------IDQLKIWAD-R-----------T 165 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~-~g~kV~lva~DtfR~aA------------~eQL~~~a~-~-----------~ 165 (321)
+..|.+.|==|+|||||.+-||+-+.+ +|+||++|-||.---.- .+.|+.+++ . .
T Consensus 2 ~~~iaiyGKGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dST~~l~g~~~~~tv~d~l~~~~~~~~~~e~ii~~g~~ 81 (275)
T PRK13233 2 TRKIAIYGKGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFK 81 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCC
T ss_conf 73899989985446545999999999647988999797887613677608987883999998628875538888753789
Q ss_pred CCCCCCCCCCCCCH--------HHHHHHHHHHH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 35321223586612--------45422899996--514875998654333211577899998998763022234301123
Q gi|254780709|r 166 SADFVCSEIGSDAA--------ALAYEAFKQAQ--AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 (321)
Q Consensus 166 ~v~~~~~~~~~dp~--------~v~~~a~~~a~--~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~l 235 (321)
|+.++.. .+..|. ..+++-++... ..++|+|++|+.|=.--.-=.|. ......+++++
T Consensus 82 gv~cVEa-Ggp~pG~gcagrgii~~~~lle~~~~~~~~~D~Vl~DvLGdVvcGgFa~P-----------ir~~~AdeV~I 149 (275)
T PRK13233 82 GIRCVES-GGPEPGVGCAGRGVITAITLMEEHGAYEDDLDFVFFDVLGDVVCGGFAMP-----------IRDGKAQEVYI 149 (275)
T ss_pred CCEEEEC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCC-----------CCCCCCCEEEE
T ss_conf 8579868-99986665576312358888998097434688899841561105551034-----------31366888999
Q ss_pred ECCCCC-C-HHHHHH---HHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 102335-2-257789---998764--358976999654578706999999999769889
Q gi|254780709|r 236 VLDATT-G-QNALRQ---VEMFHA--VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 (321)
Q Consensus 236 Vlda~~-g-q~~~~~---a~~F~~--~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~ 287 (321)
|.++-- . ..+-++ ...|.+ .+.+.|+|++..+.+..--.+=..+..++.|+.
T Consensus 150 Vts~E~msL~aannI~~~l~~~~~~~~~~l~Gii~N~r~~~~e~~~v~~fa~~ig~~vi 208 (275)
T PRK13233 150 VASGEMMALYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQLI 208 (275)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 94683799999999999999985058963899997178886079999999998599579
No 62
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=98.25 E-value=0.00018 Score=51.66 Aligned_cols=182 Identities=19% Similarity=0.202 Sum_probs=103.5
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-----------HHHHHHHHHHH--------------HHHCC
Q ss_conf 231135444442478999999985226742677434512-----------45688999997--------------53035
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-----------SAAIDQLKIWA--------------DRTSA 167 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR-----------~aA~eQL~~~a--------------~~~~v 167 (321)
.|.+.|=-|+|||||.+-|++-+...|+||++|-||.-. +--++-|+.-. ...|+
T Consensus 2 ~iaiyGKGGIGKSTtsaNlsaaLA~~GkkVl~IGcDpk~DsT~~L~g~~~~tvld~l~~~~~~~~~~~~edvi~~G~~gi 81 (271)
T CHL00072 2 KIAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGV 81 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCC
T ss_conf 69997898544858899999999987997999789973777740069988859999975378732164999985277884
Q ss_pred CCCCCCCCCCC---------HHHHHHHHHHHHH-HCCCEEEEECCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 32122358661---------2454228999965-148759986543332--11577899998998763022234301123
Q gi|254780709|r 168 DFVCSEIGSDA---------AALAYEAFKQAQA-KKVDVLIIDTAGRLH--NNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 (321)
Q Consensus 168 ~~~~~~~~~dp---------~~v~~~a~~~a~~-~~~DvvliDTAGR~~--~~~~lm~EL~ki~~v~~~~~~~~p~~~~l 235 (321)
.++ +.|.-+ ...+++-++.... .++|+|++|..|--- --.+-++ .-++++.
T Consensus 82 ~cv--EaGGPepGvGCaGrgi~~~i~lL~~l~~~~d~D~V~yDvlgDVVCGGFa~Pi~---------------~Ad~~~i 144 (271)
T CHL00072 82 DCV--EAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDVILFDVLGDVVCGGFAAPLN---------------YADYCII 144 (271)
T ss_pred EEE--ECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCC---------------CCCEEEE
T ss_conf 665--43899988777886519999999973762138889994477655654567500---------------0888999
Q ss_pred ECCC--CCCHHHHHHH---HHHHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EE----------CCCCCCC
Q ss_conf 1023--3522577899---987643--589769996545787069999999997698899-97----------5898132
Q gi|254780709|r 236 VLDA--TTGQNALRQV---EMFHAV--AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF-LG----------VGEGIND 297 (321)
Q Consensus 236 Vlda--~~gq~~~~~a---~~F~~~--~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~f-ig----------~Ge~i~D 297 (321)
|-+. |.=..|-+++ +.|.+. +.+.|+|.-..++. ..+=-.+..++.|+.. |- -|+.+=.
T Consensus 145 Vts~e~malyaANnI~~~i~~~a~~~~~rl~GiI~N~~~~~---~~v~~fa~~~g~~~i~~iPrd~~V~~ae~~~~TviE 221 (271)
T CHL00072 145 ITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSKR---DLIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFE 221 (271)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCH---HHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCEEE
T ss_conf 95670889999999999999973046864443652268837---899999997399669856871166899974882042
Q ss_pred CCCCCHH---------HHHHHHCCCC
Q ss_conf 5557789---------9999872865
Q gi|254780709|r 298 LEPFVAK---------DFSAVITGCL 314 (321)
Q Consensus 298 l~~f~~~---------~~~~~llG~g 314 (321)
..|.+|. .++++|++--
T Consensus 222 ~~p~s~~~~~~~~~Yr~LA~~I~~n~ 247 (271)
T CHL00072 222 MAESEPSLNYVCDFYLNIADQLLSQP 247 (271)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 28998247899999999999997399
No 63
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.25 E-value=1.5e-05 Score=59.30 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=59.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH--H-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 412311354444424789999999852267426774345124568899999753--0-3532122358661245422899
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--T-SADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~--~-~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
-.++.+.|+.|+||||-+-.+|....++|.+|+.+++.-|++.-+.|+....-. + ++.++ .+..-++..-+-+.+.
T Consensus 23 G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE~~~~er~~qi~~~~~~~~~~~i~~~-~~~~~~~~~~~i~~~~ 101 (224)
T PRK09361 23 GTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIF-EPSSFEEQREAIQKAE 101 (224)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCHHHHHHCCEEE-CCCCHHHHHHHHHHHH
T ss_conf 879999899998599999999999997499099967876788999998565734542061472-4798899999999999
Q ss_pred HHHHHCCCEEEEECCC
Q ss_conf 9965148759986543
Q gi|254780709|r 188 QAQAKKVDVLIIDTAG 203 (321)
Q Consensus 188 ~a~~~~~DvvliDTAG 203 (321)
....+++++|+||..-
T Consensus 102 ~~~~~~~~lvVIDSi~ 117 (224)
T PRK09361 102 KIAKENVGLIVLDSAT 117 (224)
T ss_pred HHHHCCCCEEEEECCH
T ss_conf 8750587389996230
No 64
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.24 E-value=0.00016 Score=52.10 Aligned_cols=174 Identities=20% Similarity=0.298 Sum_probs=93.0
Q ss_pred EEECCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEE-----C-CCCCHHHHHHHHHHHHHHC-----CCC-CCCC------
Q ss_conf 2311354-444424789999999852267426774-----3-4512456889999975303-----532-1223------
Q gi|254780709|r 113 VILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAA-----G-DTFRSAAIDQLKIWADRTS-----ADF-VCSE------ 173 (321)
Q Consensus 113 vil~vG~-nG~GKTTT~aKLA~~~~~~g~kV~lva-----~-DtfR~aA~eQL~~~a~~~~-----v~~-~~~~------ 173 (321)
++++.|- +|||||+..+-|++.++++|.+|.-.= + +..+.+-.+.++..+.... .|+ +..+
T Consensus 1 ~ifI~GT~T~vGKT~vt~~L~~~l~~~G~~v~~~KPv~tG~~~~~~~~Da~~~~~~~~~~~~~~~~~p~~~~~p~sP~~a 80 (223)
T PRK00090 1 VLFVTGTDTGVGKTVVTAALAQALREQGYRVAGYKPVQSGCDGGLRNGDALALQRLSGLPLDYELVNPYRFEEPLSPHLA 80 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHH
T ss_conf 98998689997699999999999997899489975120489889972799999998089998676054025889898999
Q ss_pred ---CCC--CCHHHHHHHHHHHHHHCCCEEEEECCCC--CCCHH-HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH--
Q ss_conf ---586--6124542289999651487599865433--32115-7789999899876302223430112310233522--
Q gi|254780709|r 174 ---IGS--DAAALAYEAFKQAQAKKVDVLIIDTAGR--LHNNS-ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-- 243 (321)
Q Consensus 174 ---~~~--dp~~v~~~a~~~a~~~~~DvvliDTAGR--~~~~~-~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-- 243 (321)
.+. |... +.++++.. .+++|+++|.-||= .+.+. ..+.+|. +.+ .--++||.+...|-
T Consensus 81 a~~~g~~i~~~~-i~~~~~~l-~~~~d~vlvEGaGGl~~Pl~~~~~~~Dla---~~l-------~~pvILV~~~~lG~in 148 (223)
T PRK00090 81 ARLEGVTIDLEK-ISAALREL-AQQADLVLVEGAGGLLVPLTDDLTLADLA---AQL-------QLPVILVVGVKLGCIN 148 (223)
T ss_pred HHHHCCCCCHHH-HHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHH---HHH-------CCCEEEEECCCCCHHH
T ss_conf 999098468999-99999999-83189899946886556756787889999---996-------8898999769888099
Q ss_pred HHHHHHHHH-HHHCCCCEEEEECCCCCCC--HHHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf 577899987-6435897699965457870--69999999997698899975898132555
Q gi|254780709|r 244 NALRQVEMF-HAVAGTTGLIMTKMDGTAR--GGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 (321)
Q Consensus 244 ~~~~~a~~F-~~~~~~~g~I~TKlD~ta~--~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~ 300 (321)
.++-.++.. +.-+++-|+|+.++++... --..-.+...+++| .+|.==..+++.+
T Consensus 149 htllt~eal~~~gl~v~GvI~N~~~~~~~~~~~~~~~l~~~~gvP--vLG~iP~~~~~~~ 206 (223)
T PRK00090 149 HTLLTLEAIRARGLPLAGWVANGVPPEGLRHAENLATLAELLPAP--LLGRLPYLAELSP 206 (223)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC--EEEECCCCCCCCH
T ss_conf 999989999968994899999685883667776899999854998--8997589999895
No 65
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=98.23 E-value=3.2e-05 Score=56.96 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=88.5
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH------------HHHHHHHHHH------------HCCC
Q ss_conf 231135444442478999999985226742677434512456------------8899999753------------0353
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA------------IDQLKIWADR------------TSAD 168 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA------------~eQL~~~a~~------------~~v~ 168 (321)
-|.+.|==|+|||||++-||+-+.+.|+||++|-||..-... .+-|+.+++. .|+.
T Consensus 3 ~iaiyGKGGVGKSTTt~NLaAALA~~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~~~~~l~~v~~~g~~gv~ 82 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGDIK 82 (273)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCCEE
T ss_conf 79997998665887899999999977996999897884427778858998887999998618565636661542889738
Q ss_pred CCCCCCCC-CCHH-------H-HHHHHHHH--HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 21223586-6124-------5-42289999--651487599865433321157789999899876302223430112310
Q gi|254780709|r 169 FVCSEIGS-DAAA-------L-AYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 (321)
Q Consensus 169 ~~~~~~~~-dp~~-------v-~~~a~~~a--~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVl 237 (321)
++ +.+. .|.. + .++-++.. -..++|+|++|+.|=..-..=-|- + .....+++++|.
T Consensus 83 cv--e~ggp~~g~gcagrgii~~~~lle~l~~~~~~~Dyvl~Dvlgdvvcggfa~P-~----------~~~~A~evlIVt 149 (273)
T PRK13232 83 CV--ESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMP-I----------REGKAKEIYIVA 149 (273)
T ss_pred EE--ECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC-C----------CCCCCCEEEEEE
T ss_conf 98--6899876765453047888889997083214798899941473323653144-2----------016576899980
Q ss_pred CCCC----C-HHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 2335----2-257789998764-35897699965457870699999999976988
Q gi|254780709|r 238 DATT----G-QNALRQVEMFHA-VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 (321)
Q Consensus 238 da~~----g-q~~~~~a~~F~~-~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi 286 (321)
++-- + +|..+-.+.|.+ ...+.|+|.+..+....--.+=-.+..++.|+
T Consensus 150 s~E~~slyaannI~k~i~~~~~~~~rl~GiI~n~r~~~~~~e~v~~fa~~~g~~v 204 (273)
T PRK13232 150 SGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVDGERELLEAFAKKLGSQL 204 (273)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 7608889999999999999962188501488505577638999999999719966
No 66
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.18 E-value=7.1e-06 Score=61.56 Aligned_cols=42 Identities=36% Similarity=0.422 Sum_probs=32.8
Q ss_pred CCEEECCCCC-CCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCH
Q ss_conf 4123113544-4442478999999985-2267426774345124
Q gi|254780709|r 111 PHVILVVGVN-GVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRS 152 (321)
Q Consensus 111 p~vil~vG~n-G~GKTTT~aKLA~~~~-~~g~kV~lva~DtfR~ 152 (321)
+.+|.++..- |||||||+.=||+++. ..|+||+++-+|....
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 76999985788851999999999999983899789997899941
No 67
>KOG0924 consensus
Probab=98.18 E-value=1.9e-05 Score=58.59 Aligned_cols=155 Identities=26% Similarity=0.283 Sum_probs=101.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCC-----CCC--CCCCCCHH--
Q ss_conf 1231135444442478999999985226--742677434512456889999975303532-----122--35866124--
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADF-----VCS--EIGSDAAA-- 180 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g--~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-----~~~--~~~~dp~~-- 180 (321)
.||++||-+||||||-+++. +-..| .+=++.++-.-|+||+---+..++.+|+++ |+. +.-+.+..
T Consensus 372 ~vvvivgETGSGKTTQl~Qy---L~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~I 448 (1042)
T KOG0924 372 QVVVIVGETGSGKTTQLAQY---LYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKI 448 (1042)
T ss_pred CEEEEEECCCCCCHHHHHHH---HHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEE
T ss_conf 57999935889850166799---986224558715435722789999999999985876453112488852047876057
Q ss_pred -------HHHHHHHHHHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf -------54228999965148759986543-3321157789999899876302223430112310233522577899987
Q gi|254780709|r 181 -------LAYEAFKQAQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 (321)
Q Consensus 181 -------v~~~a~~~a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F 252 (321)
+..+.+.......|.+||+|-|- |+-|-.-||.=|++. +++. -+..++|.+||. |+-.-...|
T Consensus 449 kymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~---larR----rdlKliVtSATm--~a~kf~nfF 519 (1042)
T KOG0924 449 KYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKV---LARR----RDLKLIVTSATM--DAQKFSNFF 519 (1042)
T ss_pred EEECCCHHHHHHHHHHHHHHEEEEEECHHHHCCCCHHHHHHHHHHH---HHHH----CCCEEEEEECCC--CHHHHHHHH
T ss_conf 8742305779776330044401788511433030058999999999---8742----263599762202--489998872
Q ss_pred HHH--CCCC------EEEEECCCCCCCHHHHHHH
Q ss_conf 643--5897------6999654578706999999
Q gi|254780709|r 253 HAV--AGTT------GLIMTKMDGTARGGGLIPI 278 (321)
Q Consensus 253 ~~~--~~~~------g~I~TKlD~ta~~G~~ls~ 278 (321)
.+. +.+- -++.||.--....-+++.-
T Consensus 520 gn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq 553 (1042)
T KOG0924 520 GNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQ 553 (1042)
T ss_pred CCCCEEEECCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 7886010158764237775268558899998765
No 68
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=98.18 E-value=3.6e-05 Score=56.64 Aligned_cols=149 Identities=13% Similarity=0.171 Sum_probs=77.7
Q ss_pred EEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH------HHHHHHHHHH---------------HHCCCCC
Q ss_conf 23113-544444247899999998522674267743451245------6889999975---------------3035321
Q gi|254780709|r 113 VILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA------AIDQLKIWAD---------------RTSADFV 170 (321)
Q Consensus 113 vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~a------A~eQL~~~a~---------------~~~v~~~ 170 (321)
||.++ +==|||||||++-||+-+.+.|++|++|-+|..-.. ..++-..|+. .-|+.++
T Consensus 3 iIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~~l~~~~g~~~~~~~g~~~~~l~~~~~~~~~~~~~~gl~ll 82 (244)
T pfam06564 3 VLALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASPDNLLRLHFNVDFDHSDGWARAELDGRPWRDAALRYTPGLDLL 82 (244)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHEEECCCEEEE
T ss_conf 99996699986199999999999997799589996898742102358886434414899875997777444526975897
Q ss_pred CCCCCCCC-HHH------------HHHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 22358661-245------------422899996-5148759986543332115778999989987630222343011231
Q gi|254780709|r 171 CSEIGSDA-AAL------------AYEAFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 (321)
Q Consensus 171 ~~~~~~dp-~~v------------~~~a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lV 236 (321)
. .|.-+ +.. ..+.+.... ..+||+|||||.--+. ...++-| .+-++++.|
T Consensus 83 P--~g~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l~--~l~~~al------------~aad~vLv~ 146 (244)
T pfam06564 83 P--FGQLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGFS--PLTRQLL------------ELADVTLAV 146 (244)
T ss_pred E--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH--HHHHHHH------------HHCCCEEEE
T ss_conf 2--89974789998986544379999987642135789999997999968--9999999------------976960899
Q ss_pred CCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHH-HHHHHH
Q ss_conf 023352257789998764-358976999654578706999-999999
Q gi|254780709|r 237 LDATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTARGGGL-IPIVVT 281 (321)
Q Consensus 237 lda~~gq~~~~~a~~F~~-~~~~~g~I~TKlD~ta~~G~~-ls~~~~ 281 (321)
+-+-. ...+..-.. .....++++|.+|...+...- +.+..+
T Consensus 147 v~~d~----~s~~~l~~~~~~~~~~ilvn~~d~~~~l~~d~~~~~~~ 189 (244)
T pfam06564 147 VHADA----NCHIRLHQQALPAGCHLLINDFRIGSQLQDDLYQLWLQ 189 (244)
T ss_pred ECCCH----HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 68885----89999732334467748864245576899999999998
No 69
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=98.17 E-value=0.00015 Score=52.15 Aligned_cols=186 Identities=19% Similarity=0.197 Sum_probs=102.5
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-----------HHHHHHHHHHH---HH-----------HC
Q ss_conf 1231135444442478999999985226742677434512-----------45688999997---53-----------03
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-----------SAAIDQLKIWA---DR-----------TS 166 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR-----------~aA~eQL~~~a---~~-----------~~ 166 (321)
.+|.+.|=-|+|||||.+-|++-+.+.|+||++|-||.-. +--++.|+... +. .|
T Consensus 3 ~~iaiyGKGGIGKSTttaNlsaALA~~GkkV~~IgcDPk~DsT~~L~g~~~~tild~l~~~~~~~~~~~~ed~~~~G~~g 82 (269)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAALAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVFEGYNG 82 (269)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHCCCCHHHCCHHHHHHCCCCC
T ss_conf 39999789954788899999999997699389981899732301125998787899997438760212566776337677
Q ss_pred CCCCCCCCCCCC---------HHHHHHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 532122358661---------245422899996-5148759986543332115778999989987630222343011231
Q gi|254780709|r 167 ADFVCSEIGSDA---------AALAYEAFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 (321)
Q Consensus 167 v~~~~~~~~~dp---------~~v~~~a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lV 236 (321)
+.++ +.|.-+ ...+++-++... .+.||+|++|..|=-----=-| .+. .-++++.|
T Consensus 83 v~cv--EaGGP~pG~GCaGrgi~~~~~~L~~~~~~~~~D~Vl~DvlgdVvCGGFa~-Pi~------------~Ad~~~IV 147 (269)
T PRK13185 83 VDCV--EAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGGFAA-PLQ------------YADYALIV 147 (269)
T ss_pred CEEE--ECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-CHH------------CCCEEEEE
T ss_conf 0566--43899998776764318999999872874337879995367433365557-510------------08889999
Q ss_pred CCCCC--CHHHHHHH---HHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEE-----------ECCCCCCCC
Q ss_conf 02335--22577899---98764--35897699965457870699999999976988999-----------758981325
Q gi|254780709|r 237 LDATT--GQNALRQV---EMFHA--VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL-----------GVGEGINDL 298 (321)
Q Consensus 237 lda~~--gq~~~~~a---~~F~~--~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fi-----------g~Ge~i~Dl 298 (321)
-+.-. =..|-+++ +.|.+ .+.+.|+|.-+.++.. .+=..+..++.|+.-. --|+.+=..
T Consensus 148 ts~e~~al~aAnnI~~~i~~~a~~~~~rl~GiI~Nr~~~~d---~v~~fa~~~g~~vl~~IP~~~~V~~se~~g~TviE~ 224 (269)
T PRK13185 148 TANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSGGTD---QIDKFNERVGLRTLAHVPDLDAIRRSRLKGKTLFEM 224 (269)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH---HHHHHHHHHCCCEEEECCCCHHHHHHHHCCCEEEEE
T ss_conf 25308789999999999986530158532325761688377---999999986997699789978899998749867885
Q ss_pred CCCCH--------HHHHHHHCCCCC
Q ss_conf 55778--------999998728656
Q gi|254780709|r 299 EPFVA--------KDFSAVITGCLD 315 (321)
Q Consensus 299 ~~f~~--------~~~~~~llG~gd 315 (321)
.|-++ .+++++|++-.+
T Consensus 225 ~p~~~~a~v~~~Yr~LA~~i~~~~~ 249 (269)
T PRK13185 225 EETDELEEVQNEYLRLADQLLAGPE 249 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8998178999999999999982899
No 70
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=98.16 E-value=4.2e-06 Score=63.15 Aligned_cols=43 Identities=37% Similarity=0.472 Sum_probs=33.9
Q ss_pred CCCCCEEECCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCC
Q ss_conf 667412311354-4444247899999998522674267743-451
Q gi|254780709|r 108 SHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTF 150 (321)
Q Consensus 108 ~~~p~vil~vG~-nG~GKTTT~aKLA~~~~~~g~kV~lva~-Dtf 150 (321)
..+|.||.++-- =|||||||+.-||+++..+|+||++|-| |..
T Consensus 103 g~~~~VIAVaNqKGGvGKTTTavnLA~~LAl~G~RVLlID~LDPQ 147 (388)
T PRK13705 103 DEFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQ 147 (388)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 998728999527888559999999999999779908999587888
No 71
>PRK11670 putative ATPase; Provisional
Probab=98.15 E-value=9.1e-05 Score=53.78 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=88.2
Q ss_pred CCEEEC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH--------------HCCCCCCCC--
Q ss_conf 412311-354444424789999999852267426774345124568899999753--------------035321223--
Q gi|254780709|r 111 PHVILV-VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--------------TSADFVCSE-- 173 (321)
Q Consensus 111 p~vil~-vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~--------------~~v~~~~~~-- 173 (321)
.+||++ .|==|||||||.+-||.-|.+.|+||+++-+|.|=+..---|-.-.++ -|+.+....
T Consensus 107 ~~vIAVaSGKGGVGKSTvavNLA~ALA~~G~kVgllDADi~Gpsip~mlG~~~~~~~~~d~~~i~P~~~~gi~~~S~g~l 186 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGTHMAPIMAHGLATNSIGYL 186 (369)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCC
T ss_conf 88999985899888999999999999966993789824788876502306654566468896637600058125302202
Q ss_pred CCCCCHHHHH-----HHHHHHHH----HCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH
Q ss_conf 5866124542-----28999965----14875998654-33321157789999899876302223430112310233522
Q gi|254780709|r 174 IGSDAAALAY-----EAFKQAQA----KKVDVLIIDTA-GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 (321)
Q Consensus 174 ~~~dp~~v~~-----~a~~~a~~----~~~DvvliDTA-GR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq 243 (321)
...+.+.+++ .++..+.. .++|++|||+. |=. |..| .+.+.+. .+..++| +|.|
T Consensus 187 ~~~~~~~iwRgp~~~~al~q~l~~~~wg~lDyLIID~PPGtg--Di~L-----tl~q~v~------~~gavvV---TTPq 250 (369)
T PRK11670 187 VTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTG--DIQL-----TLAQNIP------VTGAVVV---TTPQ 250 (369)
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--HHHH-----HHHHHCC------CCEEEEE---CCCC
T ss_conf 376640222130167999998777433788889983799875--2777-----8876457------6607996---2773
Q ss_pred -----HHHHHHHHHHH-HCCCCEEEEEC-------CCCCCC---HHHHHHHHHHHCCCEEEEEC
Q ss_conf -----57789998764-35897699965-------457870---69999999997698899975
Q gi|254780709|r 244 -----NALRQVEMFHA-VAGTTGLIMTK-------MDGTAR---GGGLIPIVVTHKIPVYFLGV 291 (321)
Q Consensus 244 -----~~~~~a~~F~~-~~~~~g~I~TK-------lD~ta~---~G~~ls~~~~~~~Pi~fig~ 291 (321)
|+.+....|++ .+++-|+|-.- +..... -|..=-++..+++| |+|.
T Consensus 251 ~~Al~Da~k~i~m~~k~~vpilGiVeNMs~~~c~~c~~~~~iFg~gg~e~~a~~~~v~--lLG~ 312 (369)
T PRK11670 251 DIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQ--LLGQ 312 (369)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHHCCC--EEEE
T ss_conf 7699999999999985488850688636333368999710013666099999983998--7997
No 72
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.14 E-value=4.3e-05 Score=56.04 Aligned_cols=134 Identities=21% Similarity=0.223 Sum_probs=89.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-----CCCCCC-----CCCHHH
Q ss_conf 1231135444442478999999985226742677434512456889999975303532-----122358-----661245
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-----VCSEIG-----SDAAAL 181 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-----~~~~~~-----~dp~~v 181 (321)
.|+.++|++|+||||-+-+.-...-. +..-.++.++--|.||..=-+-.|+.+|.++ |..... .-...+
T Consensus 66 ~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~ 144 (845)
T COG1643 66 QVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKV 144 (845)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEE
T ss_conf 78998679988758788999996001-66875996584389999999999998389867654379996226787714689
Q ss_pred HHHHHHH------HHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4228999------965148759986543-332115778999989987630222343011231023352257789998764
Q gi|254780709|r 182 AYEAFKQ------AQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 (321)
Q Consensus 182 ~~~a~~~------a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~ 254 (321)
+-+++-- ....+|++||||-|- |+-+-.-+|.=|+++.... .|+..++|++||. |+-+-.+.|.+
T Consensus 145 mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r------r~DLKiIimSATl--d~~rfs~~f~~ 216 (845)
T COG1643 145 MTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARR------RDDLKLIIMSATL--DAERFSAYFGN 216 (845)
T ss_pred ECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHC------CCCCEEEEEECCC--CHHHHHHHCCC
T ss_conf 514799999843802045877997013355688899999999998646------8870599972535--88999976289
No 73
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=98.14 E-value=1.9e-05 Score=58.61 Aligned_cols=143 Identities=25% Similarity=0.350 Sum_probs=90.5
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---CCHHHH--H--HHHHHH------HHHCCCCCCCCC
Q ss_conf 667412311354444424789999999852267426774345---124568--8--999997------530353212235
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAI--D--QLKIWA------DRTSADFVCSEI 174 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt---fR~aA~--e--QL~~~a------~~~~v~~~~~~~ 174 (321)
.++-++|=+.|++|+||.|-+-||...+.++|++|++||.|- |==||+ | -++-++ .-=||-+=+.+.
T Consensus 35 ~GnA~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~pt 114 (333)
T TIGR00750 35 TGNAHVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPT 114 (333)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf 27907876646888857779999989997659768999887975975514545688775442222332289856767766
Q ss_pred CCC---CHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 866---12454228999965148759986543332115778999989987630222343011231023352257789998
Q gi|254780709|r 175 GSD---AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 (321)
Q Consensus 175 ~~d---p~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~ 251 (321)
... .+.-+.+.+.-+-+-|||+|||-|-|=-|-.. .|.+++. .-+++.| +-+| ++.+.
T Consensus 115 rG~lGGls~at~~~~~lldA~G~DVI~vETVGVGQSEV-------di~~~aD-------T~v~v~~-pg~G----Dd~Q~ 175 (333)
T TIGR00750 115 RGSLGGLSKATRELVKLLDAAGYDVILVETVGVGQSEV-------DIINMAD-------TFVVVTI-PGTG----DDVQG 175 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH-------HHHHHHC-------EEEEEEC-CCCC----CHHHH
T ss_conf 67525787999999999986389879998415752487-------8873415-------0589854-8878----34666
Q ss_pred HHHHC-CC-CEEEEECCCCC
Q ss_conf 76435-89-76999654578
Q gi|254780709|r 252 FHAVA-GT-TGLIMTKMDGT 269 (321)
Q Consensus 252 F~~~~-~~-~g~I~TKlD~t 269 (321)
.+.-+ .+ |=+++-|-|..
T Consensus 176 iKaG~mEiaDI~VVNKaD~~ 195 (333)
T TIGR00750 176 IKAGVMEIADIYVVNKADGE 195 (333)
T ss_pred HHHHHHEEEEEEEEECCCCC
T ss_conf 65443023248788168876
No 74
>CHL00175 minD septum-site determining protein; Validated
Probab=98.12 E-value=7.7e-05 Score=54.27 Aligned_cols=163 Identities=17% Similarity=0.240 Sum_probs=84.4
Q ss_pred CEEEC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH--------------HHHHHH---HHH-------HHC
Q ss_conf 12311-35444442478999999985226742677434512456--------------889999---975-------303
Q gi|254780709|r 112 HVILV-VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA--------------IDQLKI---WAD-------RTS 166 (321)
Q Consensus 112 ~vil~-vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA--------------~eQL~~---~a~-------~~~ 166 (321)
.||.+ .|==|||||||++-||.-+.+.|+||+++-+|..-+.. .+.+.. +.+ .-+
T Consensus 14 kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i~~~~~~~ 93 (279)
T CHL00175 14 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVVYTAMEVLEGECRLDQALIRDKRWPN 93 (279)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCC
T ss_conf 69999748998448999999999999789988999578999987532686666667476640787664301342577787
Q ss_pred CCCCCCCCCCCCHHHHHHH----HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-
Q ss_conf 5321223586612454228----99996514875998654333211577899998998763022234301123102335-
Q gi|254780709|r 167 ADFVCSEIGSDAAALAYEA----FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT- 241 (321)
Q Consensus 167 v~~~~~~~~~dp~~v~~~a----~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~- 241 (321)
+.+........-..+..+. ++....++||+|||||..=+ +...+.-|. +-+++++|...-.
T Consensus 94 l~ll~~~~~~~~~~~~~~~~~~ll~~l~~~~yDyiiID~ppgl--~~~~~~al~------------aad~viIvttpe~~ 159 (279)
T CHL00175 94 LSLLPISKNRQRYNVTRKNMNMLVDSLKERNYDYILIDCPAGI--DVGFINAIA------------PAKEAIVVTTPEIT 159 (279)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC--CHHHHHHHH------------HCCEEEEECCCCHH
T ss_conf 7999789705445741999999999997279999998189988--899999999------------78906997899789
Q ss_pred -CHHHHHHHHHHHH-HCCCCEEEEECCCCCCCH-H---HHHHHHHHHCCCEEEEE
Q ss_conf -2257789998764-358976999654578706-9---99999999769889997
Q gi|254780709|r 242 -GQNALRQVEMFHA-VAGTTGLIMTKMDGTARG-G---GLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 242 -gq~~~~~a~~F~~-~~~~~g~I~TKlD~ta~~-G---~~ls~~~~~~~Pi~fig 290 (321)
=.|+...++.|+. .++.-++|+.+....... . ..-.+....+.| |+|
T Consensus 160 al~da~~~i~~~~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~~~~~l~v~--~lg 212 (279)
T CHL00175 160 AIRDADRVAGLLEANGIYNIKLLVNRVRPDMIKANDMMSVRDVQEMLGIP--LLG 212 (279)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCC--EEE
T ss_conf 99999999999997599862135335645543545534499999971993--465
No 75
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.11 E-value=3.9e-06 Score=63.33 Aligned_cols=50 Identities=38% Similarity=0.567 Sum_probs=44.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
++.+.|..||||||+++-||.++.++|++|+++-
T Consensus 1 ~i~~~~~kGvGKTT~a~~La~~la~~g~~Vl~vD---------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC----------------------------------------------
T ss_conf 9898589977689999999999998899699986----------------------------------------------
Q ss_pred CCCEEEEECCCCCCCHHH
Q ss_conf 487599865433321157
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSI 210 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~ 210 (321)
|+|+|||+|.......
T Consensus 35 --d~iiiD~~~~~~~~~~ 50 (99)
T cd01983 35 --DYVLIDTPPGLGLLVL 50 (99)
T ss_pred --CCEEECCCCCCCHHHH
T ss_conf --7178858998884689
No 76
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=98.11 E-value=5.2e-05 Score=55.48 Aligned_cols=155 Identities=23% Similarity=0.225 Sum_probs=80.2
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
..|.++|..++||||-+-.|-.....-......-...+..--..||- -|+.+ +...+. +..
T Consensus 4 rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~------rgiTi-------~~~~~~------~~~ 64 (185)
T pfam00009 4 RNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERE------RGITI-------KIAAVS------FET 64 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH------CCEEE-------EEEEEE------EEE
T ss_conf 78999938994499999999715487654643100333365588885------78269-------876999------960
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH-----HHHHHHHHHHCCCCEEEEECC
Q ss_conf 148759986543332115778999989987630222343011231023352257-----789998764358976999654
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA-----LRQVEMFHAVAGTTGLIMTKM 266 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~-----~~~a~~F~~~~~~~g~I~TKl 266 (321)
+++.+.+|||+| |. ..+.++. +.+. ..+-.+||+||..|-.. +..++.. .+| -=++++|+
T Consensus 65 ~~~~i~~iDtPG--h~--~f~~~~~---~~l~-----~aD~~vlVvda~~G~~~qt~~~~~~~~~~--~~p-~iv~vNKi 129 (185)
T pfam00009 65 KKRHINIIDTPG--HV--DFTKEMI---RGAA-----QADGAILVVDAVEGVMPQTREHLLLAKQL--GVP-IIVFINKM 129 (185)
T ss_pred CCCEEEEEECCC--CC--CHHHHHH---HHHH-----HCCCCEEEEECCCCCCCCCHHHHHHHHHH--CCC-EEEEEECC
T ss_conf 893689998998--71--4399999---9986-----46564299986768532309999999982--898-79999773
Q ss_pred CCC--CCHHHHHHHHH-H---------HCCCEEEEEC--CCCCCCCCC
Q ss_conf 578--70699999999-9---------7698899975--898132555
Q gi|254780709|r 267 DGT--ARGGGLIPIVV-T---------HKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 267 D~t--a~~G~~ls~~~-~---------~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
|-- ++.-..+.-.. . -..|+.+++. |+++++|..
T Consensus 130 D~v~~~~~~~~~~e~~~~ll~~~~~~~~~~pivpiSA~~G~gv~~Ll~ 177 (185)
T pfam00009 130 DRVDDAELDEVVEEISRELLEKYGFGGETIPVIPGSALTGEGIDTLLE 177 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 277767699999999999888732489988699967899979899999
No 77
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=98.10 E-value=1.9e-05 Score=58.55 Aligned_cols=137 Identities=26% Similarity=0.300 Sum_probs=74.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH----------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 135444442478999999985226742677434512456----------8899999753035321223586612454228
Q gi|254780709|r 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----------IDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 (321)
Q Consensus 116 ~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA----------~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a 185 (321)
++||.||||||-++.+..++...|++|.+|-.|. |+ +..+-++.+.+.= .--++.|+ +. -+
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDP---A~e~~pY~~~iDIrd~i~~~dvM~~-~~LGPNGa----li-~~ 71 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLRGRSVYVVNLDP---AAENLPYEADIDIRELITVADVMED-YGLGPNGA----LT-VA 71 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---CCCCCCCCCCCCHHHHCCHHHHHHH-CCCCCCHH----HH-HH
T ss_conf 9898989889999999999997799759997898---6658999877717874679999998-29897389----99-99
Q ss_pred HHHHH----------HHCCCEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH----
Q ss_conf 99996----------51487599865433--321157789999899876302223430112310233522577899----
Q gi|254780709|r 186 FKQAQ----------AKKVDVLIIDTAGR--LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV---- 249 (321)
Q Consensus 186 ~~~a~----------~~~~DvvliDTAGR--~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a---- 249 (321)
++++. ....|.+|+||.|- +-+..+-|. .+.+.+.+ . +--..+++|+.-=++...-.
T Consensus 72 me~l~~~~d~l~~~l~~~~~y~l~DtPGQiElf~~~~~~~---~i~~~L~~---~-~~~~v~l~D~~~~~d~~~fis~~L 144 (234)
T pfam03029 72 MDFGRITLDWLLEELEYEDDYYLFDTPGQIELFTHWDSLA---RGVEALEA---S-RLGAVYLVDTRRLTDPIDFFSGLL 144 (234)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHH---HHHHHHHC---C-CEEEEEEECHHHHCCHHHHHHHHH
T ss_conf 9999999999999852557769983698357654002699---99999712---8-738999842577468888999999
Q ss_pred ----HHHHHHCCC-CEEEEECCCCCC
Q ss_conf ----987643589-769996545787
Q gi|254780709|r 250 ----EMFHAVAGT-TGLIMTKMDGTA 270 (321)
Q Consensus 250 ----~~F~~~~~~-~g~I~TKlD~ta 270 (321)
-.++ .++ .=.++||.|--+
T Consensus 145 ~a~s~m~~--l~lP~vnvlsK~Dl~~ 168 (234)
T pfam03029 145 YALSIMLR--LGLPFVVALNKFDLLS 168 (234)
T ss_pred HHHHHHHH--CCCCEEEEECCHHCCC
T ss_conf 99999997--4899443100041354
No 78
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.09 E-value=0.00012 Score=52.92 Aligned_cols=163 Identities=25% Similarity=0.290 Sum_probs=93.2
Q ss_pred EEECCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCCHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHH----HHH
Q ss_conf 23113544-444247899999998522674267743--451245688-9999975303532122358661245----422
Q gi|254780709|r 113 VILVVGVN-GVGKTTVIGKLSKKMSDAGLKVMLAAG--DTFRSAAID-QLKIWADRTSADFVCSEIGSDAAAL----AYE 184 (321)
Q Consensus 113 vil~vG~n-G~GKTTT~aKLA~~~~~~g~kV~lva~--DtfR~aA~e-QL~~~a~~~~v~~~~~~~~~dp~~v----~~~ 184 (321)
-+|+.|+. |+||||-++=|++.|+++|.+|.---| | | ++ ++. +...|.|.+. -||.-. +..
T Consensus 5 ~lmI~gt~S~~GKT~vt~gL~r~l~~rG~~VapFK~GPD-y----Idp~~~--~~a~g~~~~n----LD~~l~~~~~v~~ 73 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD-Y----IDPAFH--AAATGRPSRN----LDSWMMGEDLVRA 73 (451)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-C----CCHHHH--HHHHCCCCCC----CCHHHCCHHHHHH
T ss_conf 799986899997899999999999968794575357857-6----298999--9997897535----8834489999999
Q ss_pred HHHHHHHHCCCEEEEECC-----CCCCCHH-HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-CHHHHHHHHHHH---H
Q ss_conf 899996514875998654-----3332115-77899998998763022234301123102335-225778999876---4
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTA-----GRLHNNS-ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT-GQNALRQVEMFH---A 254 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTA-----GR~~~~~-~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~-gq~~~~~a~~F~---~ 254 (321)
...+ ..+++|+++|--+ |...+.. .--.|+.++ ++ .| ++||+|+.- ++....++..|. .
T Consensus 74 ~~~~-~~~~~D~~viEG~mGlyDG~~~~~~~gS~aeiA~~---l~-----~P--ViLViD~~~~~~s~aa~v~G~~~~~~ 142 (451)
T PRK01077 74 LFAR-AAGGADIAVIEGVMGLFDGAGGDPDKGSTADIARL---LG-----AP--VVLVVDASGMAQSAAALVLGFARFDP 142 (451)
T ss_pred HHHH-HCCCCCEEEEEECHHCCCCCCCCCCCCCHHHHHHH---HC-----CC--EEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 9997-54668889985010113454567777778999987---09-----98--89998466208999999999997597
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 358976999654578706999999999769889997589813255
Q gi|254780709|r 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 (321)
Q Consensus 255 ~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~ 299 (321)
.+.+-|+|+.|+-++...-.+=.....+++| .+|+=-+.+++.
T Consensus 143 ~~~I~GvIlNk~~g~~h~~ll~~~ie~~gvp--vlG~lP~~~~l~ 185 (451)
T PRK01077 143 DLNIAGVILNRVGSERHYQLLREALEELGLP--VLGALPRDAALA 185 (451)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHCCCC--EEEEECCCCCCC
T ss_conf 7877489962478766899999999863995--798615763345
No 79
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.08 E-value=0.00016 Score=52.07 Aligned_cols=147 Identities=20% Similarity=0.323 Sum_probs=78.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
.|.++|...|||+|-+-.|. |.++..++ + .|+ .. .||..-.+ ...
T Consensus 5 ~V~ivG~pN~GKSsL~N~L~------~~~~a~vs-~--~~g-------------tT-------r~~~~~~~------~~~ 49 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALV------GQKISIVS-P--KPQ-------------TT-------RNRIRGIY------TDD 49 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCEEEEC-C--CCC-------------EE-------ECCCEEEE------EEC
T ss_conf 89999999999999999995------89703323-8--898-------------26-------34423689------849
Q ss_pred CCCEEEEECCCCCCCHHHHHHH-H-HHHHHHHHCCCCCCCCEEEEECCCCCCHHH--HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 4875998654333211577899-9-989987630222343011231023352257--78999876435897699965457
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAG-I-GKMIRVLKRLDPHAPHSVLQVLDATTGQNA--LRQVEMFHAVAGTTGLIMTKMDG 268 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~E-L-~ki~~v~~~~~~~~p~~~~lVlda~~gq~~--~~~a~~F~~~~~~~g~I~TKlD~ 268 (321)
++.++++||+|=. ...+.+.+ + +...+.++ ..+-+++|+|++-+-.. ....+...+.-.--=++++|.|-
T Consensus 50 ~~~~~l~DtpG~~-~~~~~~~~~~~~~~~~~l~-----~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~~iivlNK~Dl 123 (168)
T cd04163 50 DAQIIFVDTPGIH-KPKKKLGERMVKAAWSALK-----DVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDL 123 (168)
T ss_pred CEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHH-----CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEEE
T ss_conf 9789999589866-5145677899999998651-----365589999789898667799999999809985999978870
Q ss_pred CCCHHHHHHHHHH-----HCCCEEEEEC--CCCCCCCCC
Q ss_conf 8706999999999-----7698899975--898132555
Q gi|254780709|r 269 TARGGGLIPIVVT-----HKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 269 ta~~G~~ls~~~~-----~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
-.+-......... ...|+.+|+. |+.+++|..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~Gid~L~~ 162 (168)
T cd04163 124 VKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLE 162 (168)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf 478778999999999618999689997778969999999
No 80
>PRK09401 reverse gyrase; Reviewed
Probab=98.08 E-value=1.7e-05 Score=58.81 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=48.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 231135444442478999999985226742-677434512456889999975303532
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADRTSADF 169 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV-~lva~DtfR~aA~eQL~~~a~~~~v~~ 169 (321)
-+.++-|||+||||.-.=+|.|+.++|+|+ ++..+-+-=.-+++-|+.||++.|+++
T Consensus 95 SFaiiAPTG~GKTtfgl~~sly~a~kgkks~~i~PT~~Lv~Q~~~kl~~~~~~~~~~~ 152 (1176)
T PRK09401 95 SFAIIAPTGVGKTTFGLVMALYLAKKGKKSYIIFPTRLLVEQVVEKLRKLAEKVGVKV 152 (1176)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7489888998888999999999986598399996888999999999999999709984
No 81
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=98.08 E-value=6.5e-05 Score=54.81 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=35.0
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 23113544444247899999998522674267743451
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dtf 150 (321)
.|.+-|==|||||||+.-||+-+...|+||++|-||..
T Consensus 3 ~ia~yGKGGVGKTTTavNLAaALA~~GkkVLlID~DPq 40 (292)
T PRK13230 3 QIAFYGKGGIGKSTTVCNLAAALSKSGKKVIVVGCDPK 40 (292)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 79991799857898999999999987995999776797
No 82
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=98.06 E-value=9.2e-06 Score=60.74 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=33.5
Q ss_pred CCCCCEEECCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEEC-CC
Q ss_conf 667412311354-4444247899999998522674267743-45
Q gi|254780709|r 108 SHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAG-DT 149 (321)
Q Consensus 108 ~~~p~vil~vG~-nG~GKTTT~aKLA~~~~~~g~kV~lva~-Dt 149 (321)
...|.||.++-- =|||||||+.-||+++..+|++|++|-| |.
T Consensus 103 ~~~~~VIAVaN~KGGVGKTTTavnLA~~LAl~G~RVL~ID~lDP 146 (387)
T PHA02519 103 DKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDP 146 (387)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 88752899861688776999999999999976996899959885
No 83
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.05 E-value=3.9e-05 Score=56.33 Aligned_cols=120 Identities=23% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-----CCHHHH------------HHHHHHHHHHCCCCC
Q ss_conf 667412311354444424789999999852267426774345-----124568------------899999753035321
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-----FRSAAI------------DQLKIWADRTSADFV 170 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt-----fR~aA~------------eQL~~~a~~~~v~~~ 170 (321)
...+.++|++|+..|||||-++=||+.+..+|++|.++-+|. +=||.+ +||.-+.-. |+
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~----Fv 145 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLY----FV 145 (398)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCEE----EE
T ss_conf 06873899989867678899999998876447418999689997666797467741256777777775865227----98
Q ss_pred CC-CCCCCCHHH---HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 22-358661245---4228999965148759986543332115778999989987630222343011231023
Q gi|254780709|r 171 CS-EIGSDAAAL---AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 (321)
Q Consensus 171 ~~-~~~~dp~~v---~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda 239 (321)
++ .+...|... +-...+.|+.. .|++||||.|--+- ..=|+=+..+.++++ |+.++.+-++
T Consensus 146 G~isP~~~~~~~i~~v~rL~~~a~~~-~~~ilIdT~GWi~G-~~g~elk~~li~~ik------P~~Ii~l~~~ 210 (398)
T COG1341 146 GSISPQGFPGRYIAGVARLVDLAKKE-ADFILIDTDGWIKG-WGGLELKRALIDAIK------PDLIIALERA 210 (398)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEECCCCCEEC-CHHHHHHHHHHHHCC------CCEEEEECCC
T ss_conf 51477777689999999999986516-87799969984307-427899999886509------7789993144
No 84
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=98.03 E-value=0.00026 Score=50.61 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=90.3
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999878520100121000136674123113544444247899999998522674267743451245688999997530
Q gi|254780709|r 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 (321)
Q Consensus 86 ~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~ 165 (321)
..|.+.+.+.|...... ......|.-|.+||=..|||.| |.+.+..+.+.+. ++.-
T Consensus 188 ~dLld~i~~~l~~~~~~--~~~~~~~~rIAIvGrPNvGKSt----L~N~llg~~r~iv------------------s~~~ 243 (474)
T PRK03003 188 ADLLDAVLAALPEVPEV--GSAVGGPRRVALVGKPNVGKSS----LLNKLAGEERSVV------------------HDVA 243 (474)
T ss_pred HHHHHHHHHHCCCCCCC--CCCCCCCCEEEEECCCCCCHHH----HHHHHHCCCCEEE------------------CCCC
T ss_conf 99999999748776644--3345776279998089987889----9999858975674------------------5899
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-----CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 353212235866124542289999651487599865433-----321157789999899876302223430112310233
Q gi|254780709|r 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR-----LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 (321)
Q Consensus 166 ~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR-----~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~ 240 (321)
|. -.||..+.+ ..++..+.||||||= ...+.+.+. ..+.++... ..+-++||+||+
T Consensus 244 GT-------TRDsI~~~~------~~~~~~~~liDTAGiRrk~kv~~~iE~~s----~~rtl~aI~--~advvilviDa~ 304 (474)
T PRK03003 244 GT-------TVDPVDSLI------ELGGKVWRFVDTAGLRRKVGQASGHEFYA----SLRTHAAID--AAEVAVVLIDAS 304 (474)
T ss_pred CC-------CCCCEEEEE------EECCEEEEEEECCCCCCCCCCCCCHHHHH----HHHHHHHHH--HCCEEEEEEECC
T ss_conf 85-------154405899------99998999998987663553343145899----999999987--335579998546
Q ss_pred CCHH--HHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHH------HHHHHHCCCEEEEEC--CCCCCCCC
Q ss_conf 5225--77899987643589769996545787069-999------999997698899975--89813255
Q gi|254780709|r 241 TGQN--ALRQVEMFHAVAGTTGLIMTKMDGTARGG-GLI------PIVVTHKIPVYFLGV--GEGINDLE 299 (321)
Q Consensus 241 ~gq~--~~~~a~~F~~~~~~~g~I~TKlD~ta~~G-~~l------s~~~~~~~Pi~fig~--Ge~i~Dl~ 299 (321)
-|-. -..+|..-.+.=---=+++.|.|--.+-. ..+ ........||.||+. |++++.|-
T Consensus 305 egit~QD~~Ia~~v~~~gk~~IivvNKwDLv~~~~~~~~~~~i~~~l~~~~~~piv~ISA~~g~~i~kL~ 374 (474)
T PRK03003 305 EPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVRWAPRVNISAKTGRAVQKLV 374 (474)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHH
T ss_conf 5874999999999998099579999714416867899999999864554489856999810487989999
No 85
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.02 E-value=5.9e-05 Score=55.11 Aligned_cols=167 Identities=20% Similarity=0.296 Sum_probs=113.8
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC---CHHHHHHH
Q ss_conf 674123113544444247899999998522674267743451245688999997530353212235866---12454228
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD---AAALAYEA 185 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d---p~~v~~~a 185 (321)
....++-+++-.||||||.+-+....++.+ .++++|.+|..-.--.|.++. .|+|++..+.|.- -|..+.+|
T Consensus 102 ~gv~~lNl~sSPGSGKTtLLe~ti~~L~~~-~~~aVIeGD~~T~~DA~RI~~----~Gv~avQInTG~~CHLDA~MV~~a 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARIRA----TGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHHH----CCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 791899930699878899999999987336-757999604235667999997----699589954799767599999999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-HHHHHHHHHHHCCCCEEEEE
Q ss_conf 99996514875998654333211577899998998763022234301123102335225-77899987643589769996
Q gi|254780709|r 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN-ALRQVEMFHAVAGTTGLIMT 264 (321)
Q Consensus 186 ~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~-~~~~a~~F~~~~~~~g~I~T 264 (321)
+......+.|+++|.-.|-|- +.....---+....|++.+-|-| -+.--.+|..+ +-+|+|
T Consensus 177 l~~l~l~~~dllfIENVGNLV---------------CPA~FDLGE~~kVvvlSVtEGeDKPlKYP~mF~~a---d~vlin 238 (290)
T PRK10463 177 APRLPLDDNGILFIENVGNLV---------------CPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAA---SLMLLN 238 (290)
T ss_pred HHHCCCCCCCEEEEECCCCCC---------------CCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHC---CEEEEE
T ss_conf 984898779899981278843---------------55120367761799997068888644476676425---789986
Q ss_pred CCCCCCCHH----HHHHHHHH--HCCCEEEEE--CCCCCCCC
Q ss_conf 545787069----99999999--769889997--58981325
Q gi|254780709|r 265 KMDGTARGG----GLIPIVVT--HKIPVYFLG--VGEGINDL 298 (321)
Q Consensus 265 KlD~ta~~G----~~ls~~~~--~~~Pi~fig--~Ge~i~Dl 298 (321)
|.|--...+ ....-+.. -++||..++ +||.++..
T Consensus 239 KiDLlp~~dFD~~~~~~~~~~vNp~~~v~~vSa~tGeGld~W 280 (290)
T PRK10463 239 KVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQW 280 (290)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
T ss_conf 565122028899999999998698985899756888789999
No 86
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.02 E-value=0.0004 Score=49.28 Aligned_cols=147 Identities=21% Similarity=0.314 Sum_probs=78.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
+|.+||.+-|||+|-+-+|+. .++.+. +.|+-+ .||.. ..+. ...
T Consensus 43 ~VaivG~PNvGKSTLlN~L~g------~~~~v~--------------------~~~~tT----~d~~~---~~i~--~~~ 87 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTG------ADVYAE--------------------DQLFAT----LDPTT---RRLR--LPD 87 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHC------CCCEEE--------------------CCCCCC----CCCEE---EEEE--ECC
T ss_conf 799988999989999999948------996341--------------------567764----57636---6899--569
Q ss_pred CCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH--HHHHHHHHHHHHCCCC----EEEEEC
Q ss_conf 48759986543-3321157789999899876302223430112310233522--5778999876435897----699965
Q gi|254780709|r 193 KVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ--NALRQVEMFHAVAGTT----GLIMTK 265 (321)
Q Consensus 193 ~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq--~~~~~a~~F~~~~~~~----g~I~TK 265 (321)
++.++++|||| -.+...++.+..+.-.+.+. ..+-+++|+|++... ...++...+-+.++.. =++++|
T Consensus 88 ~~~i~l~DT~G~i~~~p~~lie~~~~tle~i~-----~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NK 162 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVA-----EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNK 162 (204)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH-----HCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 97799983686446783789999999999997-----3989999997998536677999999999806555760788867
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf 45787069999999997698899975--898132555
Q gi|254780709|r 266 MDGTARGGGLIPIVVTHKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 266 lD~ta~~G~~ls~~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
.|--... ...........|+.+|+. |+.++.|..
T Consensus 163 iDl~~~~-~~~~~~~~~~~~~i~ISA~~g~Gid~L~~ 198 (204)
T cd01878 163 IDLLDDE-ELEERLEAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred CCCCCCH-HHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 0479957-58999970899879998868949999999
No 87
>KOG0922 consensus
Probab=98.01 E-value=7.9e-05 Score=54.19 Aligned_cols=159 Identities=23% Similarity=0.333 Sum_probs=103.4
Q ss_pred CEEECCCCCCCCHHHHHHHHHHH--HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-----CCCC--CCCCC-HHH
Q ss_conf 12311354444424789999999--85226742677434512456889999975303532-----1223--58661-245
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-----VCSE--IGSDA-AAL 181 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~--~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-----~~~~--~~~dp-~~v 181 (321)
.++.++|-||+||||-+-.+-+. |..+|+ ++.+---|+||+-=-+-.|+-++..+ |... ..+.+ -.|
T Consensus 67 qvlIviGeTGsGKSTQipQyL~eaG~~~~g~---I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~Tri 143 (674)
T KOG0922 67 QVLIVIGETGSGKSTQIPQYLAEAGFASSGK---IACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRI 143 (674)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHCCCCCCCC---EEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEE
T ss_conf 7799984898985332769998626566882---7750671677888999999985897676222699845667873369
Q ss_pred HH--HH------HHHHHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 42--28------999965148759986543-3321157789999899876302223430112310233522577899987
Q gi|254780709|r 182 AY--EA------FKQAQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 (321)
Q Consensus 182 ~~--~a------~~~a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F 252 (321)
.| |+ +..-...+|++||+|-|- |+-+-.-|+.=|+++.+- .|+..+.|++||. |+..-.+.|
T Consensus 144 kymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-------R~~LklIimSATl--da~kfS~yF 214 (674)
T KOG0922 144 KYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-------RPDLKLIIMSATL--DAEKFSEYF 214 (674)
T ss_pred EEECCHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHC-------CCCCEEEEEEEEE--CHHHHHHHH
T ss_conf 9961359999885087645444899832231015788999999998732-------7783699992352--489999986
Q ss_pred HHH--CCCCE------EEEECCCCCCCHHHHHHHHHHH
Q ss_conf 643--58976------9996545787069999999997
Q gi|254780709|r 253 HAV--AGTTG------LIMTKMDGTARGGGLIPIVVTH 282 (321)
Q Consensus 253 ~~~--~~~~g------~I~TKlD~ta~~G~~ls~~~~~ 282 (321)
+++ +.+-| +..||-..+....+++-.+.+.
T Consensus 215 ~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~I 252 (674)
T KOG0922 215 NNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQI 252 (674)
T ss_pred CCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 47956766688775568863688504678999999998
No 88
>KOG1805 consensus
Probab=97.97 E-value=3.7e-05 Score=56.53 Aligned_cols=52 Identities=33% Similarity=0.470 Sum_probs=37.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3113544444247899999998522674267743451245688999997530353
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~ 168 (321)
.|+.|..|.|||||+.-|-..+...|+||+|.+ |---||+-+=.=-...+++
T Consensus 688 ~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLts---yThsAVDNILiKL~~~~i~ 739 (1100)
T KOG1805 688 ALILGMPGTGKTTTISLLIKILVALGKKVLLTS---YTHSAVDNILIKLKGFGIY 739 (1100)
T ss_pred HEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE---HHHHHHHHHHHHHHCCCCC
T ss_conf 203269989812259999999997388189985---0567889999987506711
No 89
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.97 E-value=0.00014 Score=52.49 Aligned_cols=170 Identities=24% Similarity=0.307 Sum_probs=100.0
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHH----------------HHHHHH-----------
Q ss_conf 23113544444247899999998522-67426774345124568899----------------999753-----------
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQL----------------KIWADR----------- 164 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~-g~kV~lva~DtfR~aA~eQL----------------~~~a~~----------- 164 (321)
+|.++|=-||||||-+|=||+++..+ |++|+.|-||- -++=.+|| +..-..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 69996599765899999999999864895499994899-99907762999987553008999999861478999553001
Q ss_pred ------------------HCCCCCCCCC--C---CCCH-HHHHHHHHHHHHHCCCEEEEECC-CCCCCHHHHHHHHHHHH
Q ss_conf ------------------0353212235--8---6612-45422899996514875998654-33321157789999899
Q gi|254780709|r 165 ------------------TSADFVCSEI--G---SDAA-ALAYEAFKQAQAKKVDVLIIDTA-GRLHNNSILMAGIGKMI 219 (321)
Q Consensus 165 ------------------~~v~~~~~~~--~---~dp~-~v~~~a~~~a~~~~~DvvliDTA-GR~~~~~~lm~EL~ki~ 219 (321)
+.+-+.+... | .=|+ +++++=+.+...+.+|+|++||- |==|.-
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfg----------- 149 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFG----------- 149 (255)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHC-----------
T ss_conf 375433516988500688007995255679974316278999999999751667489996334566656-----------
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC---CC--CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 8763022234301123102335225778999876435---89--769996545787069999999997698899975898
Q gi|254780709|r 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA---GT--TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 (321)
Q Consensus 220 ~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~---~~--~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~ 294 (321)
+-.....|-++.|+|.+. .++..|+.+.+-. ++ =.+|+.|.|+. ...+.-.....++| ++|
T Consensus 150 ----Rg~~~~vD~vivVvDpS~--~sl~taeri~~L~~elg~k~i~~V~NKv~e~--e~~~~~~~~~~~~~--vlg---- 215 (255)
T COG3640 150 ----RGTIEGVDLVIVVVDPSY--KSLRTAERIKELAEELGIKRIFVVLNKVDEE--EELLRELAEELGLE--VLG---- 215 (255)
T ss_pred ----CCCCCCCCEEEEEECCCH--HHHHHHHHHHHHHHHHCCCEEEEEEEECCCH--HHHHHHHHHCCCCE--EEE----
T ss_conf ----563257877999957877--8888899999999871875499999503411--57777653227974--899----
Q ss_pred CCCCCCCCHHHHHHHHC
Q ss_conf 13255577899999872
Q gi|254780709|r 295 INDLEPFVAKDFSAVIT 311 (321)
Q Consensus 295 i~Dl~~f~~~~~~~~ll 311 (321)
.-|+||+-+---+-
T Consensus 216 ---~iP~d~~v~~~dl~ 229 (255)
T COG3640 216 ---VIPYDPEVVEADLK 229 (255)
T ss_pred ---ECCCCHHHHHCCCC
T ss_conf ---71698788742256
No 90
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.93 E-value=3.8e-05 Score=56.45 Aligned_cols=133 Identities=25% Similarity=0.292 Sum_probs=69.9
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
-+|++|+.|+||||-+ .+.|.+--+. |++....- -| +++..+.| ++- .+
T Consensus 113 WYlviG~~gsGKTt~l-------~~Sgl~fPl~----------~~~~~~~~-~g---~ggt~~cd----wwf------t~ 161 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLL-------QNSGLKFPLA----------ERLGAAAL-RG---VGGTRNCD----WWF------TD 161 (1169)
T ss_pred EEEEECCCCCCHHHHH-------HHCCCCCCCC----------CCCCHHHC-CC---CCCCCCCC----EEE------EC
T ss_conf 5899789998668999-------8379988774----------10011221-58---89985557----165------27
Q ss_pred CCCEEEEECCCCCCCHHHH----HHHHHHHHHHHHCCCCCCCC-EEEEECCC--CCCHHH--H-HH-------HHHHHHH
Q ss_conf 4875998654333211577----89999899876302223430-11231023--352257--7-89-------9987643
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPH-SVLQVLDA--TTGQNA--L-RQ-------VEMFHAV 255 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~l----m~EL~ki~~v~~~~~~~~p~-~~~lVlda--~~gq~~--~-~~-------a~~F~~~ 255 (321)
+-|+||||||.-+..+. -.|=...-+.+++.-+..|. =++|++|. +.+++. . .. ....++.
T Consensus 162 --~AVliDtaGry~~Q~~~~~~d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~ 239 (1169)
T TIGR03348 162 --EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ 239 (1169)
T ss_pred --CEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf --879994797602688864001899999999998648989987689997899974789999999999999999999998
Q ss_pred CCCC---EEEEECCCCCCCHHHHHHH
Q ss_conf 5897---6999654578706999999
Q gi|254780709|r 256 AGTT---GLIMTKMDGTARGGGLIPI 278 (321)
Q Consensus 256 ~~~~---g~I~TKlD~ta~~G~~ls~ 278 (321)
+++. -++|||+|-=+=...-++.
T Consensus 240 lg~~~PVYv~~TK~Dll~GF~eff~~ 265 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLLAGFEEFFAD 265 (1169)
T ss_pred HCCCCCEEEEEECHHHHHCHHHHHHH
T ss_conf 29987759986640123069999985
No 91
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.91 E-value=5.9e-05 Score=55.11 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=60.5
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---------HHCC-CCCCCC---CCC
Q ss_conf 741231135444442478999999985226742677434512456889999975---------3035-321223---586
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---------RTSA-DFVCSE---IGS 176 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~---------~~~v-~~~~~~---~~~ 176 (321)
+.+++++.|+.|+||||-+..+++...++|.+++.++++.-+..-+.|.+.++- ++.+ |+.... ...
T Consensus 31 ~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~~~~G~L~i~~~~~~~~~~~~~ 110 (241)
T PRK06067 31 FGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKSYLKQMESLKLDISDFFIWGYLRIFPLNTEGFEWNSE 110 (241)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCCCHH
T ss_conf 99089998079988799999999999867982999994289999999999839985999866970578324111342155
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 612454228999965148759986543
Q gi|254780709|r 177 DAAALAYEAFKQAQAKKVDVLIIDTAG 203 (321)
Q Consensus 177 dp~~v~~~a~~~a~~~~~DvvliDTAG 203 (321)
++..+...-++..+..+.++|+||+--
T Consensus 111 ~~~~ll~~l~~~v~~~~~~~vVIDSls 137 (241)
T PRK06067 111 LAEKLLDLIIEFIKRRREEVIIIDSLT 137 (241)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCHH
T ss_conf 689999999999997199899992801
No 92
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.91 E-value=0.00052 Score=48.45 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7412311354444424789999999-85226742677434512456889999975303532
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~-~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~ 169 (321)
+.+++++.|++|+||||-+..+++. +.++|.+|+.++.+.- .+|+...+..+|.++
T Consensus 18 ~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~----~~~l~~~~~~~g~~~ 74 (231)
T pfam06745 18 EGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEP----PEDLRENAKSFGWDL 74 (231)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----HHHHHHHHHHCCCCH
T ss_conf 996999985897259999999999999865896899981379----999999999829985
No 93
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=97.90 E-value=7.3e-05 Score=54.42 Aligned_cols=103 Identities=20% Similarity=0.239 Sum_probs=62.4
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHH
Q ss_conf 36674123113544444247899999998522674267743451245688999997530353--2122358661245422
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD--FVCSEIGSDAAALAYE 184 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~--~~~~~~~~dp~~v~~~ 184 (321)
...+|..|++.|.+|+||||.+..+...+. +..+..|..|.||.-- -.|.+...-+ -.......+...++..
T Consensus 8 ~~~~Pkai~laG~pGAGKS~~~~~~~~~~~--~~~~v~In~D~~r~~~----P~y~~l~~~~~~~~~~~~~~~a~~~~~~ 81 (191)
T pfam06414 8 PQERPVAVLLGGQPGAGKTELARALLEELG--GGNVVRIDPDELRTYH----PDYDELQKADPKDASELTQPDASRWVEK 81 (191)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCC--CCCCEEECCHHHHHHH----HHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 876987999957998888999999987537--8993897135878877----7478655407677899989999999999
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHH-HHHHHHH
Q ss_conf 8999965148759986543332115-7789999
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTAGRLHNNS-ILMAGIG 216 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTAGR~~~~~-~lm~EL~ 216 (321)
.++++..++++ ++|||.+|..... .+++.|+
T Consensus 82 ~~~~a~~~r~n-~iiegT~~~~~~~~~~~~~lk 113 (191)
T pfam06414 82 LIDYAIERGYN-IILEGTLRSPDVARKLARKLK 113 (191)
T ss_pred HHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHH
T ss_conf 99999975999-898577789799999999999
No 94
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=97.90 E-value=0.00055 Score=48.31 Aligned_cols=164 Identities=21% Similarity=0.257 Sum_probs=87.8
Q ss_pred CCEEECC-CCCCCCHHHHHHHH-HHHHHHCCCCEEEEECCCCCHHH----------------------HHHHHHHHHHHC
Q ss_conf 4123113-54444424789999-99985226742677434512456----------------------889999975303
Q gi|254780709|r 111 PHVILVV-GVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAA----------------------IDQLKIWADRTS 166 (321)
Q Consensus 111 p~vil~v-G~nG~GKTTT~aKL-A~~~~~~g~kV~lva~DtfR~aA----------------------~eQL~~~a~~~~ 166 (321)
.++|.++ |==|+||||+.|-| |..++..|++|+++-+|..-+.= ++.....+.+-|
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHCCCCHHHEEEECCCCC
T ss_conf 78999984588756898998699999964897699996588887288885888885509999707787768023157689
Q ss_pred CCCCCCCCCCCCHHHHH------HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 53212235866124542------289999651487599865433321157789999899876302223430112310233
Q gi|254780709|r 167 ADFVCSEIGSDAAALAY------EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 (321)
Q Consensus 167 v~~~~~~~~~dp~~v~~------~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~ 240 (321)
+.+++...+ +..... ..+-..-.+.+|+|+|||.+=++.+. +.-+. . -++.++|..-.
T Consensus 82 l~vipg~~~--~~~~~~~~~~~~~~~~~~l~~~~D~iliD~~aGl~~~~--~~~~~-----------~-sd~~viVt~pe 145 (262)
T COG0455 82 LYVLPGGSG--LEDLAKLDPEDLEDVIKELEELYDYILIDTGAGLSRDT--LSFIL-----------S-SDELVIVTTPE 145 (262)
T ss_pred EEEEECCCC--HHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHH--HHHHH-----------H-CCCEEEEECCC
T ss_conf 899607887--68886169888999999987529999996899966888--99987-----------3-68179992798
Q ss_pred C--CHHHHHHHHH-HHHHCCCCE--EEEECCCCCCCH----HHHHHHHHHHCCCEEEEEC
Q ss_conf 5--2257789998-764358976--999654578706----9999999997698899975
Q gi|254780709|r 241 T--GQNALRQVEM-FHAVAGTTG--LIMTKMDGTARG----GGLIPIVVTHKIPVYFLGV 291 (321)
Q Consensus 241 ~--gq~~~~~a~~-F~~~~~~~g--~I~TKlD~ta~~----G~~ls~~~~~~~Pi~fig~ 291 (321)
. =+|+....+. .+...+..+ +|+.+.++...+ -.+...+.+.- |+.|++.
T Consensus 146 ~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~-~~~~i~~ 204 (262)
T COG0455 146 PTSITDAYKTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVP-VLQVIPF 204 (262)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEECC
T ss_conf 5208999999999997387643315899703666654678999999997077-4347156
No 95
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.89 E-value=0.00017 Score=51.91 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=89.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC-------C---CCCCCCC------
Q ss_conf 41231135444442478999999985226742677434512456889999975303-------5---3212235------
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------A---DFVCSEI------ 174 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~-------v---~~~~~~~------ 174 (321)
-.++++.|++|+|||+-+...++...+.|.+|+.|+.|--+.-=.++.+.++-... . +.+....
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~~~~~~ 102 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLVSIV 102 (260)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf 97899993899868999999999776269858999920698999999988099778975444068763121112542010
Q ss_pred ---CCCCHHHHHHHHHHHH-HHCCCEEEEECCC--CCCCHHHHH--HHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf ---8661245422899996-5148759986543--332115778--9999899876302223430112310233522577
Q gi|254780709|r 175 ---GSDAAALAYEAFKQAQ-AKKVDVLIIDTAG--RLHNNSILM--AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 (321)
Q Consensus 175 ---~~dp~~v~~~a~~~a~-~~~~DvvliDTAG--R~~~~~~lm--~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~ 246 (321)
..+..++. +.+..+. ..+.+.++||... .+..+...+ .++..+.+..++ .....+++.++..++...
T Consensus 103 ~~~~~~~~~l~-~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~~~~r~~~~~l~~~~~~----~~~t~~~~~~~~~~~~~~ 177 (260)
T COG0467 103 VGDPLDLEELL-DRIREIVEKEGADRVVIDSITELTLYLNDPALVRRILLLLKRFLKK----LGVTSLLTTEAPVEERGE 177 (260)
T ss_pred CCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHH----CCEEEEEEECCCCCCCCC
T ss_conf 46652289999-9999999862898899966307766527825789999999987650----684899997443346665
Q ss_pred H-HHHHHHHHCCCCEEEEECCC
Q ss_conf 8-99987643589769996545
Q gi|254780709|r 247 R-QVEMFHAVAGTTGLIMTKMD 267 (321)
Q Consensus 247 ~-~a~~F~~~~~~~g~I~TKlD 267 (321)
. ..+ + -++|+|-=...
T Consensus 178 ~~~~~----~-~vdgvI~l~~~ 194 (260)
T COG0467 178 SGVEE----Y-IVDGVIRLDLK 194 (260)
T ss_pred CCCEE----E-EEEEEEEEEEE
T ss_conf 66142----1-68999999777
No 96
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.89 E-value=9.5e-05 Score=53.64 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=55.3
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 74123113544444247899999998522674267743451245688999997530353212235866124542289999
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
.+.-+++.||.|+||||.+.-+|+.+...+..+..+.|..+............. ..+......
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 80 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-----------------LVRLLFELA 80 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH-----------------HHHHHHHHH
T ss_conf 998089989999886599999999712137982785477704677775760577-----------------889899999
Q ss_pred HHHCCCEEEEECCCCC
Q ss_conf 6514875998654333
Q gi|254780709|r 190 QAKKVDVLIIDTAGRL 205 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~ 205 (321)
...+..+++||=+.++
T Consensus 81 ~~~~~~vl~iDEi~~l 96 (151)
T cd00009 81 EKAKPGVLFIDEIDSL 96 (151)
T ss_pred HHCCCCEEEEECHHHC
T ss_conf 9769986982016655
No 97
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.85 E-value=0.00042 Score=49.10 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=55.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHHCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf 4123113544444247899999998522674267743451245688999-9975303532-1223586612454228999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADF-VCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~-~~a~~~~v~~-~~~~~~~dp~~v~~~a~~~ 188 (321)
-.++++.|+.|+||||-+--+|....+.|.+|+.+++-..-+.-+.|+. .-.+++.-.+ +..+..-+....+-+-++.
T Consensus 19 G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~~qi~~~~~~~~~~~i~v~~~~~~~~~~~~i~~~~~ 98 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETET 98 (218)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 87999989999849999999999986369869999665567699999987536665305146267876889999999997
Q ss_pred HHHHCCCEEEEECCC
Q ss_conf 965148759986543
Q gi|254780709|r 189 AQAKKVDVLIIDTAG 203 (321)
Q Consensus 189 a~~~~~DvvliDTAG 203 (321)
...++.++|+||..-
T Consensus 99 ~~~~~~~lvViDSi~ 113 (218)
T cd01394 99 FADEKVDLVVVDSAT 113 (218)
T ss_pred HHHCCCCEEEEECCH
T ss_conf 641477299991404
No 98
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=97.85 E-value=0.0028 Score=43.35 Aligned_cols=180 Identities=17% Similarity=0.159 Sum_probs=102.6
Q ss_pred EECCCC-CCCCHHHHHHHHHHHHHHCCCCEEE-----EE----CCCCCHHHHHHHHHHHHHHC-----CCCCCCCCCC-C
Q ss_conf 311354-4444247899999998522674267-----74----34512456889999975303-----5321223586-6
Q gi|254780709|r 114 ILVVGV-NGVGKTTVIGKLSKKMSDAGLKVML-----AA----GDTFRSAAIDQLKIWADRTS-----ADFVCSEIGS-D 177 (321)
Q Consensus 114 il~vG~-nG~GKTTT~aKLA~~~~~~g~kV~l-----va----~DtfR~aA~eQL~~~a~~~~-----v~~~~~~~~~-d 177 (321)
+++.|- +++|||...+-|++.++++|++|.- -. .|.+|.+-...|+..+...- -|+...+... .
T Consensus 5 ~FITGTDTdVGKT~vsaaL~~~l~~~G~~v~~~KPVasG~~~~~~g~~~~Da~~l~~~~~~~~~~~~vnP~~~~~~~aa~ 84 (231)
T PRK12374 5 FFITGTDTSVGKTVVSRALLQALASQGKSVAGYKPVAKGSKETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSV 84 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCH
T ss_conf 79987899953999999999999978994888856883996689987247899999873789998871976688665774
Q ss_pred C--HHH----HHHHHHHHHHHCCCEEEEECCCCC--CCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH--HHH
Q ss_conf 1--245----422899996514875998654333--211-57789999899876302223430112310233522--577
Q gi|254780709|r 178 A--AAL----AYEAFKQAQAKKVDVLIIDTAGRL--HNN-SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ--NAL 246 (321)
Q Consensus 178 p--~~v----~~~a~~~a~~~~~DvvliDTAGR~--~~~-~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq--~~~ 246 (321)
. ..+ ..+++... .+.+|+++|--||=. +.+ ...|..+. +.++ --++||.+.-.|- .++
T Consensus 85 ~~~~~id~~~i~~~~~~l-~~~~d~vlVEGAGG~~vPl~~~~~~~Dl~---~~l~-------lPVILV~~~~LG~INHtL 153 (231)
T PRK12374 85 AHSCPINYTLISNGLANL-TDKVDHVVVEGTGGWRSLMNDLRPLSEWV---VQEQ-------LPVLMVVGIQEGCINHAL 153 (231)
T ss_pred HHCCCCCHHHHHHHHHHH-HHHCCEEEEECCCCEEECCCCCCHHHHHH---HHCC-------CCEEEEECCCCCHHHHHH
T ss_conf 454857899999999998-85579799977986213047651499999---9839-------999999889868488999
Q ss_pred HHHHH-HHHHCCCCEEEEECCCCCCCH--HHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 89998-764358976999654578706--9999999997698899975898132555778999998
Q gi|254780709|r 247 RQVEM-FHAVAGTTGLIMTKMDGTARG--GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 (321)
Q Consensus 247 ~~a~~-F~~~~~~~g~I~TKlD~ta~~--G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~ 309 (321)
=.++. -+.-+++-|+|+.++|.+-.. -.+-.+...++.| ++| .+.-|..+++..+.+.
T Consensus 154 LT~eal~~~gl~l~G~I~N~~~p~~~~~~e~i~~L~~~~~~P--~LG---~iP~l~~~~~~~~~~~ 214 (231)
T PRK12374 154 LTAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAP--LIG---ELPYLPRAEQRELGQY 214 (231)
T ss_pred HHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCC--EEE---ECCCCCCCCHHHHHHH
T ss_conf 999999978995799999836797046788999999855999--788---6899999898999975
No 99
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.85 E-value=0.00044 Score=48.96 Aligned_cols=51 Identities=29% Similarity=0.387 Sum_probs=42.3
Q ss_pred CCCEEE-CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 741231-135444442478999999985226742677434512456889999
Q gi|254780709|r 110 RPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 (321)
Q Consensus 110 ~p~vil-~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~ 160 (321)
..++|+ ..|.-|+||+|+.+-||.-+...|+||+++-||.|.+.--.-|..
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~ 107 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGL 107 (265)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCC
T ss_conf 6618999758998756899999999999639938999674669863554089
No 100
>PRK06526 transposase; Provisional
Probab=97.84 E-value=0.00019 Score=51.51 Aligned_cols=153 Identities=14% Similarity=0.232 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH----HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 999999999973889899999999999875127899899999----9999878520100121000136674123113544
Q gi|254780709|r 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 (321)
Q Consensus 45 ~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~----~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~n 120 (321)
..+|.-..|+++-+...-.+.+...++........+-+++.. .+.......|.. ..+ =....-++|+|++
T Consensus 34 s~~e~L~~Lle~E~~~R~~rr~~rrlk~A~fp~~ktLe~fd~~~~~~l~~~~i~~La~----~~f--i~~~~Nvil~G~~ 107 (254)
T PRK06526 34 SHEEFLAACLQREVAARESHGGEGRIRAARFPSRKSLEEFDFDHQRSLKRDTIAHLGT----LDF--VTGKENVVFLGPP 107 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHC----CCH--HHCCCCEEEECCC
T ss_conf 9999999999999999999899999997797998898767865678989999999863----717--7658878998999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 44424789999999852267426774345124568899999753035321223586612454228999965148759986
Q gi|254780709|r 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 (321)
Q Consensus 121 G~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliD 200 (321)
|+|||--+-=||+..-++|++|..+.++.. +++|+.- ...++ ..+.+ .+...+|++|||
T Consensus 108 GtGKThLA~Alg~~A~~~G~~v~f~~~~~L----~~~L~~a----------~~~g~-----~~~~~--~~l~~~dLLIiD 166 (254)
T PRK06526 108 GTGKTHLAIGLGIRACQAGHRVLFATAAQW----VARLAAA----------HHAGR-----LQDEL--VKLGRIPLLIVD 166 (254)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEHHHH----HHHHHHH----------HHCCC-----HHHHH--HHHHCCCEEEEE
T ss_conf 986899999999999986996799877999----9999998----------85580-----99999--985136877650
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 543332115778999989987630222
Q gi|254780709|r 201 TAGRLHNNSILMAGIGKMIRVLKRLDP 227 (321)
Q Consensus 201 TAGR~~~~~~lm~EL~ki~~v~~~~~~ 227 (321)
--|..+.+..-.+- +.+++....+
T Consensus 167 e~g~~~~~~~~a~~---lf~li~~Rye 190 (254)
T PRK06526 167 EVGYIPFEAEAANL---FFQLVSSRYE 190 (254)
T ss_pred CCCCCCCCHHHHHH---HHHHHHHHHC
T ss_conf 21364478899999---9999999974
No 101
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.83 E-value=0.00017 Score=51.78 Aligned_cols=95 Identities=24% Similarity=0.231 Sum_probs=58.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH---HCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2311354444424789999999852267426774345124568899999753---0353212235866124542289999
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR---TSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~---~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
++++.|+.|+||||-+.-+|.....+|.+|+.+++.--+.--.++....... .+.-++......++..-......++
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98999899998999999999998763997999986664489999999862246713079993599976999999999999
Q ss_pred H-HHCCCEEEEECCCCCCC
Q ss_conf 6-51487599865433321
Q gi|254780709|r 190 Q-AKKVDVLIIDTAGRLHN 207 (321)
Q Consensus 190 ~-~~~~DvvliDTAGR~~~ 207 (321)
. ..+.++++||..=|+..
T Consensus 81 ~~~~~~vliiiDSit~~~~ 99 (165)
T cd01120 81 RERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHCCCCEEEEEECHHHHHH
T ss_conf 9869977999928899887
No 102
>PRK13236 nitrogenase reductase; Reviewed
Probab=97.81 E-value=0.0013 Score=45.69 Aligned_cols=168 Identities=13% Similarity=0.131 Sum_probs=100.4
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH------------HHHHHHHHHHH------------
Q ss_conf 674123113544444247899999998522674267743451245------------68899999753------------
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA------------AIDQLKIWADR------------ 164 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~a------------A~eQL~~~a~~------------ 164 (321)
++...|.+-|=-|.||+||.+-|++-+...|+||++|.||.-.-. -.+.++.++..
T Consensus 4 ~~mk~IAiYGKGGIGKSTts~NlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~tvld~~~e~~~~ed~~ledvv~~G 83 (295)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELEEVMLTG 83 (295)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHCC
T ss_conf 77618999679843475789999999997799699978898026678763899997188888760984445488874226
Q ss_pred -HCCCCCCCCCCCCCH--------HHHHHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf -035321223586612--------45422899996-51487599865433321157789999899876302223430112
Q gi|254780709|r 165 -TSADFVCSEIGSDAA--------ALAYEAFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 (321)
Q Consensus 165 -~~v~~~~~~~~~dp~--------~v~~~a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~ 234 (321)
-||.++.. .|-+|. -.+++-++... .+++|+|+.|..|------=-|- ......++++
T Consensus 84 ~~Gi~CvEs-GGPePGvGCAGRGIitai~lLee~ga~e~~D~V~yDVLGDVVCGGFAmP-----------ir~g~A~evy 151 (295)
T PRK13236 84 FRGVRCVES-GGPEPGVGCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMP-----------IREGKAQEIY 151 (295)
T ss_pred CCCCEEEEC-CCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCC-----------CCCCCCCEEE
T ss_conf 588379878-9999989888862540566798719855699898850577532675465-----------6678764899
Q ss_pred EECCC--CCCHHHHHH---HHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 31023--352257789---998764--3589769996545787069999999997698899
Q gi|254780709|r 235 QVLDA--TTGQNALRQ---VEMFHA--VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 (321)
Q Consensus 235 lVlda--~~gq~~~~~---a~~F~~--~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~f 288 (321)
+|-++ |.=+.|-++ ++.|.+ .+.+.|+|....+.+..-..+-..+..++.|+..
T Consensus 152 iVtSge~malyAANNI~~~i~~~a~~g~~rlgGiI~N~r~~~~e~~~v~~fa~~~gt~ii~ 212 (295)
T PRK13236 152 IVTSGEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDREIELIETLAKRLNTQMIH 212 (295)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 9956818899999999999999974269703589960788874799999999981992699
No 103
>PRK09183 transposase/IS protein; Provisional
Probab=97.81 E-value=0.00029 Score=50.21 Aligned_cols=154 Identities=17% Similarity=0.176 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH----HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 999999999973889899999999999875127899899999----9999878520100121000136674123113544
Q gi|254780709|r 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 (321)
Q Consensus 45 ~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~----~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~n 120 (321)
..++.-..|+++-+...-.+.+...++........+-+++.. .+.+.....|.. ..+ =....-++|+||+
T Consensus 37 s~~e~L~~Ll~~E~~~R~~rr~~r~lk~A~fp~~ktle~fDf~~~~~l~~~~i~~La~----~~f--i~~~~Nvil~G~~ 110 (258)
T PRK09183 37 SYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRS----LSF--IERNENIVLLGPS 110 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHC----CCH--HHCCCCEEEECCC
T ss_conf 9999999999999999999999999997799998777555654688623899998825----816--6558867998999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 44424789999999852267426774345124568899999753035321223586612454228999965148759986
Q gi|254780709|r 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 (321)
Q Consensus 121 G~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliD 200 (321)
|+|||--+.=||+..-++|++|..+++.. -+++|+.-- ..++ ....+.. ....+|++|||
T Consensus 111 GtGKThLA~Alg~~A~~~G~~v~f~~~~~----L~~~L~~a~----------~~~~-----~~~~l~r-~l~~~dLLIiD 170 (258)
T PRK09183 111 GVGKTHLAIALGYEAVRAGIKVRFTTAAD----LLLQLSTAQ----------RQGR-----YKTTLQR-GVMAPRLLIID 170 (258)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEHHH----HHHHHHHHH----------HCCC-----HHHHHHH-HHCCCCEEEEH
T ss_conf 98689999999999998799399978999----999999998----------7685-----9999998-74346514431
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 543332115778999989987630222
Q gi|254780709|r 201 TAGRLHNNSILMAGIGKMIRVLKRLDP 227 (321)
Q Consensus 201 TAGR~~~~~~lm~EL~ki~~v~~~~~~ 227 (321)
--|-.+.+..-.+ .+.++|....+
T Consensus 171 dlG~~~~~~~~~~---~lfeli~~Rye 194 (258)
T PRK09183 171 EIGYLPFSQEEAN---LFFQVIAKRYE 194 (258)
T ss_pred HHHCCCCCHHHHH---HHHHHHHHHHC
T ss_conf 3315468888999---99999999857
No 104
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.81 E-value=0.00016 Score=52.04 Aligned_cols=94 Identities=21% Similarity=0.335 Sum_probs=58.2
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
..|++.||+||||+||+|-+-.|+-++..+..+-=-| -.+-.-+.-..-+..-+-|.|-.+- .+|+.+|-.
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIED--------PIE~vh~skkslI~QREvG~dT~sF-~~aLraALR 196 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIED--------PIEYVHESKKSLINQREVGRDTLSF-ANALRAALR 196 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECC--------CHHHHHCCHHHHHHHHHHCCCHHHH-HHHHHHHHH
T ss_conf 6699867999967879999999984147751687237--------4686504327666687745427889-999999860
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 148759986543332115778999989987630
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~ 224 (321)
++-|||||- -|+.+..|.-++..
T Consensus 197 eDPDVIlvG----------EmRD~ETi~~ALtA 219 (353)
T COG2805 197 EDPDVILVG----------EMRDLETIRLALTA 219 (353)
T ss_pred CCCCEEEEE----------CCCCHHHHHHHHHH
T ss_conf 299979982----------13469999999989
No 105
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.81 E-value=0.00018 Score=51.73 Aligned_cols=237 Identities=15% Similarity=0.142 Sum_probs=130.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHCCCC-CCC----CCCCCCCCCCEEECCCC
Q ss_conf 9999999738898999999999998751278---998999999999878520100-121----00013667412311354
Q gi|254780709|r 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKD---VSVQRVLYDVSELIHKMLMPL-SKP----FNWDFSHRPHVILVVGV 119 (321)
Q Consensus 48 eLee~LL~ADVg~~va~~Iie~ik~~~~~~~---i~~~~i~~~l~~~L~~~L~~~-~~~----~~~~~~~~p~vil~vG~ 119 (321)
=|-..|..+.+.+..|-+|.-.+++....++ ++.+++...+.+.+.+.-.+. ... -.+.....|-+||+.|.
T Consensus 21 il~rslt~~gi~~~~A~~ia~ei~~~L~~~~~~~i~~~el~~~v~~~l~~~~~~~~a~rY~~~r~~r~~~~pliILigGt 100 (306)
T PRK04220 21 ILARSLTAAGMKPDLAYEIASEIEEELKKEGITKITKEELRRRVYYKLIEKDYEEIAEKYLLWRRIRKSKEPIIILIGGA 100 (306)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 99999998089888999999999999986577163599999999999998440999999999999853699879998589
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCC----------CCCC---------H
Q ss_conf 44442478999999985226742677434512456889999975303532-12235----------8661---------2
Q gi|254780709|r 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEI----------GSDA---------A 179 (321)
Q Consensus 120 nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~~----------~~dp---------~ 179 (321)
.|+||+|-...||.++-- .-++++|+-| |=|+..-..--.|. +.+.+ ..+| +
T Consensus 101 sGvGKSTlA~~LA~rLgI----~~visTD~IR----EVmR~~~~~el~P~Lh~SSy~Awk~l~~~~~~~~~~I~Gf~~Q~ 172 (306)
T PRK04220 101 SGVGTSTIAFELASRLGI----RSVIGTDSIR----EVMRKIISKELLPTLHESSYTAWKSLRRPPWEEPDHILGFERHV 172 (306)
T ss_pred CCCCHHHHHHHHHHHHCC----CEEECCHHHH----HHHHHCCCCCCCCHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 988789999999997098----8342221699----99985248301751322751310023678778657999999999
Q ss_pred HHHHHH----HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 454228----9999651487599865433321157789999899876302223430112310233522577899987643
Q gi|254780709|r 180 ALAYEA----FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 (321)
Q Consensus 180 ~v~~~a----~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~ 255 (321)
+.+..+ ++.+..++.++||= | .|....+|.+.-+ ..|.-+.+++-. . |--..-+.|...
T Consensus 173 ~~V~~gI~aiI~Ra~~eg~slIIE---G-VHlvP~~i~~~~~----------~~~~vi~fll~i--~-dEe~H~~RF~~R 235 (306)
T PRK04220 173 EPVLVGVEAVIERALKEGISVIIE---G-VHIVPGFIKEKYL----------NMPNVFMFVLTL--S-DEETHKARFYAR 235 (306)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEE---E-ECCCHHHHHHHHH----------CCCCEEEEEEEE--C-CHHHHHHHHHHH
T ss_conf 999999999999999729968998---4-3037788777764----------388389999997--8-889999999985
Q ss_pred CCCCEEEEECCCCCCCH-----------HHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 58976999654578706-----------9999999997698899975898132555778999998728656463
Q gi|254780709|r 256 AGTTGLIMTKMDGTARG-----------GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 (321)
Q Consensus 256 ~~~~g~I~TKlD~ta~~-----------G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd~~~ 318 (321)
...+ +-... ++ --++.-+..+++|+. ....+|.=...--+.+++++.++.+...
T Consensus 236 a~~~-----~R~~~-rYl~~f~~IR~IQ~yLv~~A~~~~vPiI---~N~~id~tv~~i~~~i~~r~~~~~~~~~ 300 (306)
T PRK04220 236 ARVS-----KRPAE-RYLKHFDEIREIQDYIVEKAKEHGVPVI---ENVSIEETVDKILEIITERLSEINEEKG 300 (306)
T ss_pred CCCC-----CCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCCEE---CCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 0447-----89878-9999799999999999999888099810---6866899999999999999999874368
No 106
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.81 E-value=0.00047 Score=48.77 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=58.2
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHH--HHHHH
Q ss_conf 41231135444442478999999985-2267426774345124568899999753035321223586-61245--42289
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAAL--AYEAF 186 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~v--~~~a~ 186 (321)
-..+++.|.+|+||||.+--+|..+. +.|++|++++..--+- .-..|..+...++|+..-..+. +.... +.++.
T Consensus 19 G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~~~--~~~~R~~a~~~~v~~~~i~~~~~~~~~~~~~~~~~ 96 (186)
T pfam03796 19 GDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMSAE--QLAERLLSSESRISSSKLRSGQLSDEDWERLAEAA 96 (186)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHH--HHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8179999679998799999999999997099668754755299--99999999862676555412512167999999999
Q ss_pred HHHHHHCCCEEEEECCCC
Q ss_conf 999651487599865433
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGR 204 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR 204 (321)
. +..++.+.+.|+.+-
T Consensus 97 ~--~~~~~~l~i~~~~~~ 112 (186)
T pfam03796 97 G--ELSEAPLYIDDTPGL 112 (186)
T ss_pred H--HHHCCCEEEECCCCC
T ss_conf 9--985398688479999
No 107
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.80 E-value=0.00025 Score=50.65 Aligned_cols=162 Identities=21% Similarity=0.299 Sum_probs=88.7
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 99998785201001210001366741231135444442478999999985226742677434512456889999975303
Q gi|254780709|r 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 (321)
Q Consensus 87 ~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~ 166 (321)
.+.+.+.+++........+ .....++++|++-+||.|-.=.|+ |+..++|+
T Consensus 195 ~l~~~i~~ll~~~~~g~~l---~~G~~v~i~G~PN~GKSSL~N~L~------~~drAIVS-------------------- 245 (445)
T PRK05291 195 ELIAELEKLLASAKQGELL---REGLKVVIAGRPNVGKSSLLNALL------GEERAIVT-------------------- 245 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH---HCCCEEEEECCCCCCHHHHHHHHH------CCCCEEEC--------------------
T ss_conf 9999999999998741786---359869988999876899999985------78746731--------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH
Q ss_conf 5321223586612454228999-965148759986543-33211577899998998763022234301123102335225
Q gi|254780709|r 167 ADFVCSEIGSDAAALAYEAFKQ-AQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 (321)
Q Consensus 167 v~~~~~~~~~dp~~v~~~a~~~-a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~ 244 (321)
..+|+ -+|.++. ....++-+.|+|||| |-..| ..+ -.-|.|..+.... .+-+++|+|++.+.+
T Consensus 246 -----~ipGT-----TRD~ie~~l~l~G~~v~l~DTAGiR~t~d--~IE-~~GI~ra~~~~~~--ADlil~v~D~s~~~~ 310 (445)
T PRK05291 246 -----DIAGT-----TRDVIEEHINLDGIPLRLIDTAGIRETED--EVE-KIGIERSRKAIEE--ADLVLLVLDASEPLT 310 (445)
T ss_pred -----CCCCC-----CCCEEEEEEEECCEEEEEEECCCCCCCCC--HHH-HHHHHHHHHHHHH--CCEEEEEEECCCCCC
T ss_conf -----89997-----40402236899998999998997665574--588-9999999999983--999999987998887
Q ss_pred HHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE--CCCCCCCCCCCC
Q ss_conf 778999876435--8976999654578706999999999769889997--589813255577
Q gi|254780709|r 245 ALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG--VGEGINDLEPFV 302 (321)
Q Consensus 245 ~~~~a~~F~~~~--~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig--~Ge~i~Dl~~f~ 302 (321)
..+.. .. +.. .-.=+|++|.|=..+ ...+.++.+|+ +|+.++.|...-
T Consensus 311 ~~~~~-~~-~~~~~~~~i~V~NK~DL~~~--------~~~~~~~i~iSak~g~Gi~~L~~~i 362 (445)
T PRK05291 311 EEDKE-IL-EEFKNKPVIVVLNKADLTGE--------KIDGLPVIRISAKTGEGIDELEEAL 362 (445)
T ss_pred CCHHH-HH-HHCCCCCEEEEEEHHHCCCC--------CCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 22599-99-85179987999851204665--------3478975999837886999999999
No 108
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.78 E-value=0.00019 Score=51.46 Aligned_cols=90 Identities=22% Similarity=0.205 Sum_probs=61.5
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC-------CCCCHH--
Q ss_conf 74123113544444247899999998522674267743451245688999997530353212235-------866124--
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-------GSDAAA-- 180 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~-------~~dp~~-- 180 (321)
+-++++++||.|+||||.....++.-.++|.++++++-+-- .+||...++.+|+|+-.... ..+|..
T Consensus 265 ~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~----~~~l~~~a~~~G~dl~~~~~~G~l~i~~~~p~~~~ 340 (501)
T PRK09302 265 RGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEES----RAQLVRNATSWGIDLEEMERKGLLKIICARPESTG 340 (501)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC----HHHHHHHHHHCCCCHHHHHHCCCEEEEEECCCCCC
T ss_conf 89469998899988899999999999865990899999679----99999999973998488874894799983700059
Q ss_pred ---HHHHHHHHHHHHCCCEEEEECCC
Q ss_conf ---54228999965148759986543
Q gi|254780709|r 181 ---LAYEAFKQAQAKKVDVLIIDTAG 203 (321)
Q Consensus 181 ---v~~~a~~~a~~~~~DvvliDTAG 203 (321)
.+..-.+.-+..+.+.|+||.--
T Consensus 341 ~~e~~~~i~~~v~~~~~~rVvIDsls 366 (501)
T PRK09302 341 LEDHLQIIKREIEEFKPSRVAVDPLS 366 (501)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 89999999999997299899995806
No 109
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=97.77 E-value=0.0025 Score=43.64 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=99.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-----------H-HHHHHHH--H-----------HH
Q ss_conf 41231135444442478999999985226742677434512456-----------8-8999997--5-----------30
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA-----------I-DQLKIWA--D-----------RT 165 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA-----------~-eQL~~~a--~-----------~~ 165 (321)
..-|.+-|=-|.||+||.+-|++-+...|+||++|.||.-.-.- + +.++.-+ + --
T Consensus 4 mr~IAiYGKGGIGKSTtssNlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G~~ 83 (293)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK 83 (293)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf 75799977984458778999999999779969997489831656876289999708899876498121538789743779
Q ss_pred CCCCCCCCCCCCCH--------HHHHHHHHHHH-HHCCCEEEEECCCCC---CCHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 35321223586612--------45422899996-514875998654333---2115778999989987630222343011
Q gi|254780709|r 166 SADFVCSEIGSDAA--------ALAYEAFKQAQ-AKKVDVLIIDTAGRL---HNNSILMAGIGKMIRVLKRLDPHAPHSV 233 (321)
Q Consensus 166 ~v~~~~~~~~~dp~--------~v~~~a~~~a~-~~~~DvvliDTAGR~---~~~~~lm~EL~ki~~v~~~~~~~~p~~~ 233 (321)
||.++.. .|-+|. ..+++-++... .+++|+|+.|..|-- -.-..+ .....+++
T Consensus 84 gI~CVEs-GGPePGvGCAGRGIitai~~Le~lga~ed~D~V~yDVLGDVVCGGFAmPi--------------r~g~A~ev 148 (293)
T PRK13234 84 GIKCVES-GGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPI--------------RENKAQEI 148 (293)
T ss_pred CEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC--------------CCCCCCEE
T ss_conf 8489768-99899888777131467888877187657999999567766514755665--------------45887689
Q ss_pred EEECCC--CCCHHHHHHH---HHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 231023--3522577899---98764--35897699965457870699999999976988999
Q gi|254780709|r 234 LQVLDA--TTGQNALRQV---EMFHA--VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 (321)
Q Consensus 234 ~lVlda--~~gq~~~~~a---~~F~~--~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fi 289 (321)
++|-++ |.=+.|-+++ +.|.+ .+.+.|+|....+....--.+=..+.+++.|+...
T Consensus 149 yIVtSge~mslyAANnI~~~i~~~~~~g~~rlgGlI~N~r~~~~e~~~v~~fa~~~gt~ii~~ 211 (293)
T PRK13234 149 YIVMSGEMMALYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAKRLGSKLIHF 211 (293)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 999467187999999999999998632696246899717898537999999999849937997
No 110
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=97.77 E-value=0.00014 Score=52.51 Aligned_cols=96 Identities=23% Similarity=0.307 Sum_probs=57.9
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 67412311354444424789999999852267426774345124568899999753035321223586612454228999
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~ 188 (321)
.=++.+||.||-|+||||++ |++|..+|++ -...........+ .++.
T Consensus 34 ri~HAYLF~GpRGtGKTS~A------------------------------RIfAKaLNC~-~~~~~PCn~C~~C-~~i~- 80 (363)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIA------------------------------RIFAKALNCQ-GPDGEPCNECESC-KEIN- 80 (363)
T ss_pred CCCCEEEECCCCCCCHHHHH------------------------------HHHHHHHCCC-CCCCCCCCCCCHH-HHHH-
T ss_conf 96623450285997635589------------------------------9999986588-7877877775022-7765-
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHH-------------------------HHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 965148759986543332115778999989-------------------------98763022234301123102335
Q gi|254780709|r 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKM-------------------------IRVLKRLDPHAPHSVLQVLDATT 241 (321)
Q Consensus 189 a~~~~~DvvliDTAGR~~~~~~lm~EL~ki-------------------------~~v~~~~~~~~p~~~~lVlda~~ 241 (321)
..+..||+=||=|-+ |..+-|+||.+= .+++=|..++.|.+|.|++ |||
T Consensus 81 -~g~~~DviEiDAASN--~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FIl-ATT 154 (363)
T TIGR02397 81 -SGSSLDVIEIDAASN--NGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL-ATT 154 (363)
T ss_pred -CCCCCCEEEECCCCC--CCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE-ECC
T ss_conf -289866688648656--87889999987303687554433588732302865689998765227987628887-348
No 111
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.76 E-value=0.00037 Score=49.46 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH----------CCCCCCCCCC-CCC
Q ss_conf 74123113544444247899999998522674267743451245688999997530----------3532122358-661
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIG-SDA 178 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~----------~v~~~~~~~~-~dp 178 (321)
+.+.+++.|-+|+|||+-+..+++-+.++|.+|..+++.--+-.=++|.+.++--+ =+|++..-.+ .+-
T Consensus 23 ~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~~~~~~~~ 102 (230)
T PRK08533 23 FGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 98489998689987899999999999878986999994389999999999869981799757967999613433540457
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 24542289999651487599865433
Q gi|254780709|r 179 AALAYEAFKQAQAKKVDVLIIDTAGR 204 (321)
Q Consensus 179 ~~v~~~a~~~a~~~~~DvvliDTAGR 204 (321)
.....+-+...+..+.|+|+|||..-
T Consensus 103 ~~~L~~ll~~~~~~~~dvIIIDSlS~ 128 (230)
T PRK08533 103 RDFLDKLMNTRRFYEKDVVIIDSLSS 128 (230)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 89999997326643798999905318
No 112
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.76 E-value=0.0025 Score=43.63 Aligned_cols=205 Identities=19% Similarity=0.297 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------HHCCCCCHHH
Q ss_conf 99999999999999999998605677899--9--99999999997388989999999999987-------5127899899
Q gi|254780709|r 15 RKLTKGFASTSLKLKEGITDIISSRRLDD--G--VREELEDLLIRSDIGVAVAQKIVEELLTK-------RYAKDVSVQR 83 (321)
Q Consensus 15 ~kLk~gL~kt~~~L~~~l~~l~~~~~lde--~--~leeLee~LL~ADVg~~va~~Iie~ik~~-------~~~~~i~~~~ 83 (321)
+.|-.-+-.=+..|+..|.++.+.++-|. . .|.++.+. +++=++++..+ ...++++...
T Consensus 3 ~~Ld~~m~~Dr~~lRRrL~~l~k~~~~d~~~aPh~L~~~~~~----------~~~a~~~V~~R~~~~P~i~YPd~LPvS~ 72 (1320)
T TIGR01967 3 EDLDHVMLRDRHRLRRRLHKLRKEKDQDRKEAPHALAKLREK----------IDAACDKVEAREQAVPEIRYPDNLPVSA 72 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCCCEEECCCCCCHHH
T ss_conf 468889887577888888874388776564555999999999----------9999999999997098430878887111
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99999998785201001210001366741231135444442478999999985226742677434512456889999975
Q gi|254780709|r 84 VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 (321)
Q Consensus 84 i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~ 163 (321)
-...+.+.|.+ + -||.+.|=|||||||=+=|++-=|-+ |.+=++.-+=--|.||--=-.-.|+
T Consensus 73 kRedI~~AI~~--------------n--QVviiAGETGSGKTTQLPKICLELGr-G~~GlIGHTQPRRlAAR~VA~R~Ae 135 (1320)
T TIGR01967 73 KREDIAKAIAE--------------N--QVVIIAGETGSGKTTQLPKICLELGR-GSRGLIGHTQPRRLAARSVAERVAE 135 (1320)
T ss_pred HHHHHHHHHHH--------------C--CEEEEECCCCCCCCCCCHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 18999999984--------------8--98999724487620232167775427-8765412471468899999999999
Q ss_pred HHCCCC---------CCCCC-CCCCHHHHHHHHHHHH------HHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 303532---------12235-8661245422899996------5148759986543-33211577899998998763022
Q gi|254780709|r 164 RTSADF---------VCSEI-GSDAAALAYEAFKQAQ------AKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLD 226 (321)
Q Consensus 164 ~~~v~~---------~~~~~-~~dp~~v~~~a~~~a~------~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~ 226 (321)
-+|-|+ |...- ..--+++.-|+|=-|. .+.||-||||=|= ||=|=.=|+-=|+.| .
T Consensus 136 ELgtplGe~VGYkVRF~D~v~~~t~VKLmTDGiLLAE~Q~DRfL~~YDTIIIDEAHERSLNIDFLLGYLK~l-------L 208 (1320)
T TIGR01967 136 ELGTPLGELVGYKVRFEDQVSSNTLVKLMTDGILLAETQQDRFLERYDTIIIDEAHERSLNIDFLLGYLKQL-------L 208 (1320)
T ss_pred HHCCCCCCCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHH-------C
T ss_conf 838898861320366314268854363032235899852002221067336511231123388999888763-------2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 23430112310233522577899987643
Q gi|254780709|r 227 PHAPHSVLQVLDATTGQNALRQVEMFHAV 255 (321)
Q Consensus 227 ~~~p~~~~lVlda~~gq~~~~~a~~F~~~ 255 (321)
+.-||..+..-+||+ |.-.=+++|+++
T Consensus 209 ~rRPDLKiIITSATI--D~ERFs~HFn~A 235 (1320)
T TIGR01967 209 PRRPDLKIIITSATI--DPERFSRHFNNA 235 (1320)
T ss_pred CCCCCCCEEEECCCC--CHHHHHHHHCCC
T ss_conf 668865257400235--744687862278
No 113
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.76 E-value=0.00055 Score=48.27 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=39.1
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 41231135444442478999999985-2267426774345124568899999753035321
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~ 170 (321)
-.++++.|.+|+||||-+.-+|..+. +.|++|++.++-.-.--- ..+..+...++++.
T Consensus 30 GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~--~~Rlls~~~g~~~~ 88 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT--ARRLLGQYAGKRLH 88 (271)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH--HHHHHHHHHCCCHH
T ss_conf 808999968998699999999999999769908999704999999--99999998299711
No 114
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.75 E-value=0.0031 Score=43.03 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHH
Q ss_conf 36674-1231135444442478999999985226742677434512456889999975303532-122358661245422
Q gi|254780709|r 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYE 184 (321)
Q Consensus 107 ~~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~~~~dp~~v~~~ 184 (321)
.+++| .++||+||+|||||-++--||.++-....+..-+-+--| ..=-..+.-+|.|= |.+.. ..-...+
T Consensus 590 dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy-----~E~hsvsrLiGaPPGYVGy~---egG~Lte 661 (852)
T TIGR03346 590 DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEY-----MEKHSVARLIGAPPGYVGYE---EGGQLTE 661 (852)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHH-----CCHHHHHHHCCCCCCCCCCC---CCCEECH
T ss_conf 899974589986788776899999999998558520698430443-----01224778558999767768---7874239
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCHHHH
Q ss_conf 899996514875998654333211-577899998998763022-23430112310233522577
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLD-PHAPHSVLQVLDATTGQNAL 246 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTAGR~~~~-~~lm~EL~ki~~v~~~~~-~~~p~~~~lVlda~~gq~~~ 246 (321)
++ +.+-|-|||.|---.-|-+ -|++-++-.--+.-.... ...-.-++.++-++.|...+
T Consensus 662 ~v---r~~PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~~Gr~vdF~NtiiimTSN~Ga~~i 722 (852)
T TIGR03346 662 AV---RRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFI 722 (852)
T ss_pred HH---HHCCCEEEEECCHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEEECCCCHHHH
T ss_conf 89---81988799853054307689999998823674307999888535568986154065999
No 115
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.73 E-value=0.00061 Score=47.98 Aligned_cols=151 Identities=22% Similarity=0.343 Sum_probs=76.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
|--|.++|..-+||+|-+-+|. |.++.+++ + .-|.. .|+....+ .
T Consensus 2 ~~~V~ivG~pN~GKSTL~N~l~------g~~~~~vs-~---------------~pgtT-------r~~~~~~~------~ 46 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALL------GEERVIVS-D---------------IAGTT-------RDSIDVPF------E 46 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHH------CCCCEEEC-C---------------CCCCE-------EECCEEEE------E
T ss_conf 9899999899998999999983------89844434-9---------------99915-------73328999------9
Q ss_pred HHCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH--HHHHHHHHHCCCCEEEEEC
Q ss_conf 51487599865433---321157789999899876302223430112310233522577--8999876435897699965
Q gi|254780709|r 191 AKKVDVLIIDTAGR---LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL--RQVEMFHAVAGTTGLIMTK 265 (321)
Q Consensus 191 ~~~~DvvliDTAGR---~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~--~~a~~F~~~~~~~g~I~TK 265 (321)
.++..+.++||+|= .+.... ++.+ .+.+.+... ...+-+++|+||..+-... ...+...+.-..-=++++|
T Consensus 47 ~~~~~~~~vDtpGi~~~~~~~~~-~e~~-~~~~~~~~i--~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK 122 (174)
T cd01895 47 YDGKKYTLIDTAGIRRKGKVEEG-IEKY-SVLRTLKAI--ERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNK 122 (174)
T ss_pred ECCEEEEEEECCCCCCCCCCCCH-HHHH-HHHHHHHHH--HHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99988999857884213442106-8899-999999999--8428658997589899889999999999859986999856
Q ss_pred CCCCCCHHHHHHH-H----H----HHCCCEEEEEC--CCCCCCCCC
Q ss_conf 4578706999999-9----9----97698899975--898132555
Q gi|254780709|r 266 MDGTARGGGLIPI-V----V----THKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 266 lD~ta~~G~~ls~-~----~----~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
.|--.+-...+.- . . ....||.+++. |+.+++|..
T Consensus 123 ~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA~~g~Gi~~L~~ 168 (174)
T cd01895 123 WDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFD 168 (174)
T ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 7526764778999999999873416899289997447989999999
No 116
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.73 E-value=0.0001 Score=53.36 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=49.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 123113544444247899999998522-6742677434512456889999975303532122358661245422899996
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~-g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
..|+++|++|||||||++-+..++.+. ++++.-+ -|. +|-+ +.... .-+...+.+.|..+- .+++..+.
T Consensus 2 GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTi-EDP-----iE~~--~~~~~-~~i~q~e~g~~~~sf-~~~lr~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI-EDP-----IEFV--HESKR-SLINQREVGLDTLSF-ENALKAAL 71 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE-CCC-----HHHH--CCCCC-EEEEECCCCCCCCCH-HHHHHHHH
T ss_conf 38999899999799999999985363788369996-473-----7752--36764-488733307886379-99999998
Q ss_pred HHCCCEEEEE
Q ss_conf 5148759986
Q gi|254780709|r 191 AKKVDVLIID 200 (321)
Q Consensus 191 ~~~~DvvliD 200 (321)
.++-|+|+|.
T Consensus 72 R~~PDvI~vG 81 (198)
T cd01131 72 RQDPDVILVG 81 (198)
T ss_pred HHCCCEEECC
T ss_conf 5488857527
No 117
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.72 E-value=0.00011 Score=53.23 Aligned_cols=80 Identities=24% Similarity=0.332 Sum_probs=50.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC--------CCCC--C-C--CCH-
Q ss_conf 311354444424789999999852267426774345124568899999753035321--------2235--8-6--612-
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--------CSEI--G-S--DAA- 179 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~--------~~~~--~-~--dp~- 179 (321)
|.+.|=-|+||||..+-||.++.++|++|+++-+|.= .+-+++.++.. .... + . =|+
T Consensus 2 ia~~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp~---------dlpe~~~~~~~~~~~l~~lg~~~~~g~GC~C~~n 72 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD---------DLPERLSVEVGEIKLLLVMGMGRPGGEGCYCPEN 72 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC---------CCHHHHCEECCCCCEEEEEECCCCCCCCEECCHH
T ss_conf 7898899774999999999999978996999989897---------1235542331787079999734358994088257
Q ss_pred HHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 45422899996514875998654
Q gi|254780709|r 180 ALAYEAFKQAQAKKVDVLIIDTA 202 (321)
Q Consensus 180 ~v~~~a~~~a~~~~~DvvliDTA 202 (321)
.+.++-+++...+++|+|++||.
T Consensus 73 ~ll~~~l~~l~~~~~~~VvvD~e 95 (116)
T cd02034 73 ALLNALLRHLVLTRDEQVVVDTE 95 (116)
T ss_pred HHHHHHHHHHCCCCCCEEEEECC
T ss_conf 89999999970679989999678
No 118
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.71 E-value=0.00047 Score=48.77 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=76.8
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-----CCCCCC---CCC--HHHH
Q ss_conf 231135444442478999999985226742677434512456889999975303532-----122358---661--2454
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-----VCSEIG---SDA--AALA 182 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-----~~~~~~---~dp--~~v~ 182 (321)
+++++|++|+||||-+--. .+......--++.+---|.||.-=-+-.|+.+|-++ |..... +.- ..++
T Consensus 22 ~~vl~a~tGsGKtTqvP~~--ll~~~~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e~~~s~~Tri~~~ 99 (812)
T PRK11664 22 QVLLKAPTGAGKSTWLPLQ--LLQQGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEVV 99 (812)
T ss_pred EEEEEECCCCCHHHHHHHH--HHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 7999908999989999999--99646889938993883999999999999972999998675782567788998579997
Q ss_pred HHHHHH------HHHHCCCEEEEECCCCCCCHHHH-HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 228999------96514875998654333211577-89999899876302223430112310233522577899987643
Q gi|254780709|r 183 YEAFKQ------AQAKKVDVLIIDTAGRLHNNSIL-MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 (321)
Q Consensus 183 ~~a~~~------a~~~~~DvvliDTAGR~~~~~~l-m~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~ 255 (321)
.+++-- -...+|++||+|-+---+.+.++ +.=+.++.+.+ .|+..++||+||. |+ ..|.++
T Consensus 100 T~GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~------r~dLklvvMSATl--d~----~~~~~~ 167 (812)
T PRK11664 100 TEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGL------RDDLKLLIMSATL--DN----DRLQQL 167 (812)
T ss_pred CHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH------CCCCEEEEECCCC--CH----HHHHHH
T ss_conf 55899999724977677888999575468751899999999999861------8982899984788--84----889975
Q ss_pred CC
Q ss_conf 58
Q gi|254780709|r 256 AG 257 (321)
Q Consensus 256 ~~ 257 (321)
++
T Consensus 168 ~~ 169 (812)
T PRK11664 168 LP 169 (812)
T ss_pred CC
T ss_conf 89
No 119
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.71 E-value=5.9e-05 Score=55.08 Aligned_cols=92 Identities=22% Similarity=0.356 Sum_probs=55.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
.|+|+|..||||||-+..|+.++..+|..|.+++.|.+|-. +..|-+.. +...-+..+.+++.+..+
T Consensus 1 Livl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~~d~~~~~----~~~~~~~~---------Ek~~r~~~~~~v~~~l~~ 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELSKKLSEKNIDNIILGTDLIRES----FPVWKEKY---------EEFIRDSTLYLIKTALKN 67 (249)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHH----HHHCCHHH---------HHHHHHHHHHHHHHHHCC
T ss_conf 97896789998999999999999982996599655200212----00033677---------999899999999998433
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 48759986543332115778999989987
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v 221 (321)
+ ++||+|.-- .-...--||-.+.|.
T Consensus 68 ~-~~vI~D~~n---YiKg~RYEL~clAk~ 92 (249)
T TIGR03574 68 K-YSVIVDDTN---YYNSKRRDLINIAKE 92 (249)
T ss_pred C-CEEEECCCC---HHHHHHHHHHHHHHH
T ss_conf 7-669972732---788999999999998
No 120
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.71 E-value=0.00091 Score=46.75 Aligned_cols=144 Identities=20% Similarity=0.259 Sum_probs=80.7
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|.++|.+-+||||-+-+|. |.++.+++- .|..+ .|+.... ....+
T Consensus 4 ValvG~pN~GKStL~N~l~------g~~~~ivs~-------------------~pgtT----rd~~~~~------~~~~~ 48 (157)
T cd04164 4 VVIVGKPNVGKSSLLNALA------GRDRAIVSD-------------------IAGTT----RDVIEES------IDIGG 48 (157)
T ss_pred EEEECCCCCCHHHHHHHHH------CCCCEEECC-------------------CCCEE----EECCEEE------EEECC
T ss_conf 9998899998999999996------897334328-------------------89847----8632678------95399
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 87599865433321157789999899876302223430112310233522577899-98764358976999654578706
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTARG 272 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~~~~g~I~TKlD~ta~~ 272 (321)
+.+.++||+|= +...+.++ ...+.+..... ...+-+++|+|+..+....+.. .......| -=++++|.|--..-
T Consensus 49 ~~i~l~DTpG~-~~~~~~~e-~~~~~~~~~~i--~~aDlil~vvD~~~~~~~~~~~~~~~~~~~p-~i~v~NKiDl~~~~ 123 (157)
T cd04164 49 IPVRLIDTAGI-RETEDEIE-KIGIERAREAI--EEADLVLFVIDASRGLDEEDLEILELPADKP-IIVVLNKSDLLPDS 123 (157)
T ss_pred EEEEEEECCCC-CCCCCHHH-HHHHHHHHHHC--CCCCEEEEEEECCCCCCHHHHHHHHHHCCCC-EEEEEECCCCCCCH
T ss_conf 88999726775-44457899-99999998630--1576799998898778888999998514799-89999676014866
Q ss_pred HHHHHHHHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf 9999999997698899975--898132555
Q gi|254780709|r 273 GGLIPIVVTHKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 273 G~~ls~~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
-. .....+.|+.+|+. |+.+++|..
T Consensus 124 ~~---~~~~~~~~vi~ISA~~g~Gi~~L~~ 150 (157)
T cd04164 124 EL---LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred HH---HHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf 67---9852899779998527959999999
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00017 Score=51.79 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=62.8
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHH
Q ss_conf 674123113544444247899999998522674267743451245688999997530353212235----8661245422
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI----GSDAAALAYE 184 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~----~~dp~~v~~~ 184 (321)
.-|+.++|.||.|+||||++-=+|+.+--.+.....-+|..-+. +.....+++.... +-|-+.-..+
T Consensus 38 RIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~---------~~~~s~DViEIDAASn~gVDdIReLie 108 (718)
T PRK07133 38 KISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIE---------NFNNNLDIIEMDAASNNGVDEIRELRE 108 (718)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH---------CCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 97505862389986889999999999679999999997702143---------047898737754556688899999999
Q ss_pred HHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH
Q ss_conf 899996-51487599865433321157789999899876302223430112310233522
Q gi|254780709|r 185 AFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 (321)
Q Consensus 185 a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq 243 (321)
.+.+.- ..+|-|.|||-|-+|.... .+-|- +..+..|..+++++ |||--
T Consensus 109 ~v~y~P~~gkYKVyIIDEvHMLS~~A--fNALL-------KtLEEPP~hvvFIL-aTTep 158 (718)
T PRK07133 109 NVKNLPQISKYKIYIIDEVHMLSKSA--FNALL-------KTLEEPPKHVIFIL-ATTDV 158 (718)
T ss_pred HHCCCCCCCCEEEEEEECCCCCCHHH--HHHHH-------HHHCCCCCCCEEEE-EECCH
T ss_conf 82558877872499996620079999--99999-------85027987827999-70882
No 122
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00019 Score=51.50 Aligned_cols=177 Identities=17% Similarity=0.239 Sum_probs=96.5
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 231135444442478999999985226742-677434512456889999975303-532122358661245422899996
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADRTS-ADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV-~lva~DtfR~aA~eQL~~~a~~~~-v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
-+.++-|+|+||||...=.|.|+..+|+++ .++.+-|-=.-+.+-|+.+++..+ ..+-....+.-|..--..+++...
T Consensus 99 SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~ 178 (1187)
T COG1110 99 SFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIE 178 (1187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 44898278876547999999998755874999966789999999999998865378524665312366577999999986
Q ss_pred HH----------------------CCCEEEEECC------CCCCCHHHHH------------HHHHHHHHHHH-------
Q ss_conf 51----------------------4875998654------3332115778------------99998998763-------
Q gi|254780709|r 191 AK----------------------KVDVLIIDTA------GRLHNNSILM------------AGIGKMIRVLK------- 223 (321)
Q Consensus 191 ~~----------------------~~DvvliDTA------GR~~~~~~lm------------~EL~ki~~v~~------- 223 (321)
+. ++|+|+||-. +|. .|.-|+ -++.++++.++
T Consensus 179 ~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskN-vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~ 257 (1187)
T COG1110 179 SGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKN-VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAER 257 (1187)
T ss_pred CCCCCEEEEEHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCC-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5996399974787886699840457778998047889863444-888999808887888888999999998632236778
Q ss_pred ------C----CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC---------EEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf ------0----22234301123102335225778999876435897---------6999654578706999999999769
Q gi|254780709|r 224 ------R----LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT---------GLIMTKMDGTARGGGLIPIVVTHKI 284 (321)
Q Consensus 224 ------~----~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~---------g~I~TKlD~ta~~G~~ls~~~~~~~ 284 (321)
. .....-....||+.+.||.-.-.-+..|.+-+++. .++=+-. .+...+..++++..+|.
T Consensus 258 ~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~y~-~~~~~e~~~elvk~lG~ 336 (1187)
T COG1110 258 VREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIYV-ESESLEKVVELVKKLGD 336 (1187)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHEEEEEC-CCCCHHHHHHHHHHHCC
T ss_conf 99999988888877504773699960557877743889999839856764031300044203-68637889999998489
Q ss_pred C-EEEEEC
Q ss_conf 8-899975
Q gi|254780709|r 285 P-VYFLGV 291 (321)
Q Consensus 285 P-i~fig~ 291 (321)
- +.|+..
T Consensus 337 GgLIfV~~ 344 (1187)
T COG1110 337 GGLIFVPI 344 (1187)
T ss_pred CEEEEEEC
T ss_conf 74999971
No 123
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=97.67 E-value=0.00011 Score=53.16 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=70.2
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHC-CCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHH
Q ss_conf 23113544444247899999998522-6742-6774345124568899999753035321---22358661245422899
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDA-GLKV-MLAAGDTFRSAAIDQLKIWADRTSADFV---CSEIGSDAAALAYEAFK 187 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~-g~kV-~lva~DtfR~aA~eQL~~~a~~~~v~~~---~~~~~~dp~~v~~~a~~ 187 (321)
-+.++-||||||||--.=.|.|++.+ |++| .+..+-+-=.-|.|.|+.+++..|+-+. ...++.=|.+==.+.++
T Consensus 101 SFai~APTGVGKttFG~~mslflA~kKGkR~y~ilPT~lLv~Qv~~kl~~~~~k~g~~~~~l~~~yhS~L~~~~kke~~E 180 (1843)
T TIGR01054 101 SFAIVAPTGVGKTTFGLVMSLFLAKKKGKRSYIILPTTLLVKQVAEKLSSLAEKEGVGIVRLLGAYHSKLSTKEKKEVKE 180 (1843)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 64898058876779999999998654298789994707889999999875200257500002221011265456788999
Q ss_pred HHHHHCCCEEEEECCC
Q ss_conf 9965148759986543
Q gi|254780709|r 188 QAQAKKVDVLIIDTAG 203 (321)
Q Consensus 188 ~a~~~~~DvvliDTAG 203 (321)
...+.+||+ ||=|++
T Consensus 181 ri~~GDfdi-litT~~ 195 (1843)
T TIGR01054 181 RIENGDFDI-LITTSM 195 (1843)
T ss_pred HHHCCCEEE-EHHHHH
T ss_conf 873189178-612246
No 124
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.67 E-value=0.00077 Score=47.25 Aligned_cols=114 Identities=22% Similarity=0.254 Sum_probs=63.4
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHH-H-HCCCC-EEEEECCCCCHHHH--HHHHHHHHHHCCCC----------CCC--CC
Q ss_conf 123113544444247899999998-5-22674-26774345124568--89999975303532----------122--35
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKM-S-DAGLK-VMLAAGDTFRSAAI--DQLKIWADRTSADF----------VCS--EI 174 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~-~-~~g~k-V~lva~DtfR~aA~--eQL~~~a~~~~v~~----------~~~--~~ 174 (321)
...++.|-.|.|||||++||=+-+ . ..+.+ -...++-|=||||- |-+.....++.+.- .+. --
T Consensus 163 ~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGKAAaRL~Esi~~~~~~l~~~~~~~~~~p~~a~TiHRLL 242 (607)
T PRK10875 163 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 242 (607)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEHHHHC
T ss_conf 77899679998778899999999999645899708998822899999999998787534766566633765566589752
Q ss_pred CCCCHHHHHHHHHHHHH--HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-EEEEECCC
Q ss_conf 86612454228999965--1487599865433321157789999899876302223430-11231023
Q gi|254780709|r 175 GSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH-SVLQVLDA 239 (321)
Q Consensus 175 ~~dp~~v~~~a~~~a~~--~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~-~~~lVlda 239 (321)
|..|.+--| .+-.. =.+|+|+||-|- ..|..||.-|- +.+. |+ ..+||-|.
T Consensus 243 g~~p~~~~f---~~~~~nPL~~DvlIVDEAS--MVDl~Lm~~LL---~Alp------~~aRLILvGD~ 296 (607)
T PRK10875 243 GAQPGSQRL---RYHAGNPLHLDVLVVDEAS--MIDLPMMSRLI---DALP------DHARVIFLGDR 296 (607)
T ss_pred CCCCCCCCC---CCCCCCCCCCCEEEEECCH--HHHHHHHHHHH---HHCC------CCCEEEEECCH
T ss_conf 967898765---6577999988989990733--66599999999---8289------99889996562
No 125
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.67 E-value=4.8e-05 Score=55.69 Aligned_cols=40 Identities=30% Similarity=0.447 Sum_probs=37.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 2311354444424789999999852267426774345124
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~ 152 (321)
+|.+.|+.||||||.+.+|+..+..+|.+|.++++|.|--
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9899898977899999999999846488539995466645
No 126
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.66 E-value=5.6e-05 Score=55.22 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=59.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH---------H-----HHHHHHH-HHHCCCCCCCCCC
Q ss_conf 41231135444442478999999985226742677434512456---------8-----8999997-5303532122358
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA---------I-----DQLKIWA-DRTSADFVCSEIG 175 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA---------~-----eQL~~~a-~~~~v~~~~~~~~ 175 (321)
+--|.+.|+.||||||-+.|+|..++.+|.+|.=+-|---|-+. . .||..-+ .+.-|.=|...-
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v- 83 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV- 83 (179)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEH-
T ss_conf 4599986799845899999999999855966513983114208827515999814795579888478876210478627-
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 661245422899996514875998654333211577899
Q gi|254780709|r 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 (321)
Q Consensus 176 ~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~E 214 (321)
.+--.++-.|++.|... .|+|+||--|-|-...+-+.+
T Consensus 84 ~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~ 121 (179)
T COG1618 84 EGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFRE 121 (179)
T ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCCHHHCCHHHHH
T ss_conf 88899868999988634-998999433633020088999
No 127
>COG4240 Predicted kinase [General function prediction only]
Probab=97.66 E-value=0.00078 Score=47.23 Aligned_cols=57 Identities=19% Similarity=0.305 Sum_probs=48.9
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 366741231135444442478999999985226-742677434512456889999975
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWAD 163 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g-~kV~lva~DtfR~aA~eQL~~~a~ 163 (321)
..++|.++-++||+||||||+.+-|-..+..+| .+++-.+.|-|----.+||+..-+
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q 103 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQ 103 (300)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHH
T ss_conf 1279639985268887653599999999997365306886645531043899999873
No 128
>PRK00784 cobyric acid synthase; Provisional
Probab=97.66 E-value=0.0024 Score=43.83 Aligned_cols=179 Identities=21% Similarity=0.238 Sum_probs=111.9
Q ss_pred EEECCCCC-CCCHHHHHHHHHHHHHHCCCCEE-----------EEECCCCCHHHHHHHHHHHHHHCCCCCCCC----CCC
Q ss_conf 23113544-44424789999999852267426-----------774345124568899999753035321223----586
Q gi|254780709|r 113 VILVVGVN-GVGKTTVIGKLSKKMSDAGLKVM-----------LAAGDTFRSAAIDQLKIWADRTSADFVCSE----IGS 176 (321)
Q Consensus 113 vil~vG~n-G~GKTTT~aKLA~~~~~~g~kV~-----------lva~DtfR~aA~eQL~~~a~~~~v~~~~~~----~~~ 176 (321)
.+|+.|.. +|||||-+|=|+..|++.|.+|+ .|++|-.-+|=.+=++.+|-.+.-.+.-+| +.+
T Consensus 5 ~lMv~GT~S~vGKS~l~aaLCRi~~~~G~~VaPFKaQNMslNs~vt~dG~EigrAQ~~QA~Aag~~p~v~MNPILLKP~g 84 (492)
T PRK00784 5 ALMVQGTTSDAGKSTLVAGLCRILARRGLRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLLKPQS 84 (492)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEECCCCCEEHHHHHHHHHHCCCCCCCCCCCEEECCCC
T ss_conf 05888678887799999999999995898557857022466517889998336999999998699997676887763189
Q ss_pred --------------------------CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf --------------------------612454228999965148759986543332115778999989987630222343
Q gi|254780709|r 177 --------------------------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 (321)
Q Consensus 177 --------------------------dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p 230 (321)
....++.++++.. .+.||+|++.-|| ++-.-||++. .|.+.--...- .
T Consensus 85 d~~SQVIv~Gk~~g~~~a~~Y~~~~~~~~~~v~~a~~~L-~~~~d~iV~EGAG-SpaEiNL~~~--Di~Nm~~A~~~--~ 158 (492)
T PRK00784 85 DTGSQVIVQGKVVGNMDARDYHDYKPRLLEAVLESLDRL-AAEYDLVVVEGAG-SPAEINLRDR--DIANMGFAEAA--D 158 (492)
T ss_pred CCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCEEEEECCC-CCCCCCCCHH--HHHHHHHHHHC--C
T ss_conf 988679999978753139999986999999999999998-8658899993589-8200265220--02428999865--9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH-----HHCCCCEEEEECCCCCCCH--HHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 01123102335225778999876-----4358976999654578706--999999999769889997589813255
Q gi|254780709|r 231 HSVLQVLDATTGQNALRQVEMFH-----AVAGTTGLIMTKMDGTARG--GGLIPIVVTHKIPVYFLGVGEGINDLE 299 (321)
Q Consensus 231 ~~~~lVlda~~gq~~~~~a~~F~-----~~~~~~g~I~TKlD~ta~~--G~~ls~~~~~~~Pi~fig~Ge~i~Dl~ 299 (321)
--++||.|---|---...+-++. +.--+-|+|+.|+-|+.+. -++=-+-..+++| .+|+=-.++++.
T Consensus 159 apviLV~DIdRGGvfAsl~GT~~lL~~~eR~li~G~IiNKFRGD~~ll~pG~~~le~~tg~P--vlGviP~~~~l~ 232 (492)
T PRK00784 159 APVILVADIDRGGVFASLVGTLALLSPEERARVKGFVINKFRGDISLLEPGLDWLEELTGIP--VLGVLPYLDDLR 232 (492)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHEEEEEEEEECCCHHHHCCHHHHHHHHHCCC--CEEEECCCCCCC
T ss_conf 98899997567642687763887599988711589999764587466355999999986898--068614656799
No 129
>PRK04328 hypothetical protein; Provisional
Probab=97.66 E-value=0.0015 Score=45.25 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=44.9
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 741231135444442478999999985226742677434512456889999975303532
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~ 169 (321)
+.+++++.|+.|+||||-+...++.-.++|.+|+.++.+-- .+|+...+..+|.++
T Consensus 23 ~gs~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~eE~----~~~l~~~~~~~G~d~ 78 (250)
T PRK04328 23 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH----PVQVRRNMAQFGWDV 78 (250)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC----HHHHHHHHHHCCCCH
T ss_conf 99699998289999899999999999876997799997279----999999999809986
No 130
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.64 E-value=5.3e-05 Score=55.41 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=42.3
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 3667412311354444424789999999852267426774345124
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~ 152 (321)
.++++.||.|.|+.||||||-+-+|..+++.+|.++.+.-+|.+|-
T Consensus 3 ~~~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR~ 48 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 7888679997899999899999999999997599779988689998
No 131
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.63 E-value=8e-05 Score=54.14 Aligned_cols=77 Identities=19% Similarity=0.359 Sum_probs=57.1
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434-51245688999997530353212235866124542289999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D-tfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
...+++.||+|||||||.-.+-.++....++++-|.=- -|+...+-|+++.. +.|.+| -.++..+
T Consensus 258 ~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~-k~gltf-------------a~~LRa~ 323 (500)
T COG2804 258 QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNP-KIGLTF-------------ARALRAI 323 (500)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCEEECCC-CCCCCH-------------HHHHHHH
T ss_conf 70899968999988999999999862788508984078045159851563140-359978-------------9999998
Q ss_pred HHHCCCEEEEEC
Q ss_conf 651487599865
Q gi|254780709|r 190 QAKKVDVLIIDT 201 (321)
Q Consensus 190 ~~~~~DvvliDT 201 (321)
..++=|+|+|.-
T Consensus 324 LRqDPDvImVGE 335 (500)
T COG2804 324 LRQDPDVIMVGE 335 (500)
T ss_pred HCCCCCEEEEEC
T ss_conf 665998599835
No 132
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=97.62 E-value=0.0088 Score=39.85 Aligned_cols=180 Identities=14% Similarity=0.213 Sum_probs=93.3
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH-------
Q ss_conf 3667412311354444424789999999852267426774345124568899999753035321223586612-------
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA------- 179 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~------- 179 (321)
+...+-+|+|||+.+.|||+.+-||+.||.-.|.++-+-.+..||=... +.-.+.++| .+.+.+..
T Consensus 9 ~~~~klvIvmVGLPARGKS~ia~kl~RYL~W~g~~~kvFn~G~yRR~~~------~~~~~~~ff-dp~n~~~~~~R~~~a 81 (223)
T pfam01591 9 FTNSKTMIVMVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAV------KAYSNYEFF-RPDNTEAMKIREQCA 81 (223)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHC------CCCCCCCCC-CCCCHHHHHHHHHHH
T ss_conf 5689889999899999889999999999865699805842637887631------899994113-899989999999999
Q ss_pred -HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC----------------
Q ss_conf -454228999965148759986543332115778999989987630222343011231023352----------------
Q gi|254780709|r 180 -ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG---------------- 242 (321)
Q Consensus 180 -~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g---------------- 242 (321)
..+.+.+.+..+.+-+|-|.|-.--.......+.+. +. ..+..+++|=.-.+-
T Consensus 82 ~~~l~dl~~~l~~~~G~VaI~DATN~T~~RR~~i~~~------~~----~~~~~vlFiEsic~D~~ii~~NI~~~~~~sp 151 (223)
T pfam01591 82 LAALKDVLAYLNEESGQVAIFDATNTTRERRKNILDF------AE----ENGLKVFFLESICDDPEIIARNIKLVKFSSP 151 (223)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH------HH----HCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 9999999999985898299996887689999999999------98----6697499999973888999999999984599
Q ss_pred ----HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEECCCCC--CCCCCCCHHHHHHHHCCC
Q ss_conf ----257789998764358976999654578706999999999769-88999758981--325557789999987286
Q gi|254780709|r 243 ----QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI-PVYFLGVGEGI--NDLEPFVAKDFSAVITGC 313 (321)
Q Consensus 243 ----q~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~-Pi~fig~Ge~i--~Dl~~f~~~~~~~~llG~ 313 (321)
.+.-.-.+.|.+.+..---+..-+|+.- .-++ =|+.+-.|+++ .-+.=+-+-+++--|+-+
T Consensus 152 DY~~~~~e~A~~DF~~Ri~~ye~~Yepl~~~~----------d~~lsyIK~in~g~~~~vn~i~GyL~srIv~~LmNl 219 (223)
T pfam01591 152 DYKGKPPEEAIDDFMKRLECYEKQYEPLDDEH----------DEDLSYIKVINVGQSIVVNNVQGYLQSRIVYYLMNI 219 (223)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCEECCCCCC----------CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 74688999999999999997534242388343----------368756999978988999785476188899981406
No 133
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.00084 Score=47.00 Aligned_cols=120 Identities=17% Similarity=0.192 Sum_probs=59.3
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHH
Q ss_conf 67412311354444424789999999852-2674267743451245688999997530353212235866-124542289
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAF 186 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~-~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d-p~~v~~~a~ 186 (321)
.-|+.++|.||.|+||||++--+|+.+-- .+.. .-+|..- +.-+........+++.....++ ...-+++-+
T Consensus 36 rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~--~~PCg~C-----~sC~~i~~g~~~DviEidaasn~~VddIR~l~ 108 (560)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT--IMPCGEC-----FSCKSIDNDSSLDVIEIDGASNTSVQDVRQIK 108 (560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCC-----HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 9774366328998789999999999965999999--8888788-----78888745999875764364548889999999
Q ss_pred HHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH
Q ss_conf 9996----514875998654333211577899998998763022234301123102335225
Q gi|254780709|r 187 KQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 (321)
Q Consensus 187 ~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~ 244 (321)
+.+. ..+|-|+|||-|-+|....- +-|-| ..+..|..+++++=.+--+.
T Consensus 109 e~v~~~P~~~~yKV~IIDEahmLt~~A~--NALLK-------tLEEPP~~~~FILaTte~~K 161 (560)
T PRK06647 109 EEIMFPPASSRYRVYIIDEVHMLSNSAF--NALLK-------TIEEPPPYIVFIFATTEVHK 161 (560)
T ss_pred HHHCCCCCCCCEEEEEECCHHHCCHHHH--HHHHH-------HHHCCCCCEEEEEECCCHHH
T ss_conf 9863287668706999646565599999--99999-------86348875599997799476
No 134
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.61 E-value=0.00063 Score=47.85 Aligned_cols=143 Identities=24% Similarity=0.305 Sum_probs=84.1
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf 7412311354444424789999999852267426774345124568899999753035321223586612454228999-
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ- 188 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~- 188 (321)
+..+++++|..|+||||.+-+|...+......+..+.. + +....|=|+..+..+|++.- .. +.... +..++.
T Consensus 42 ~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~-~-~l~~~~ll~~i~~~lg~~~~-~~---~~~~~-~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-T-RVDAEDLLRMVAADFGLETE-GR---DKAAL-LRELEDF 114 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC-C-CCCHHHHHHHHHHHCCCCCC-CC---CHHHH-HHHHHHH
T ss_conf 89659997299898899999999845934548999769-9-99999999999998598988-98---99999-9999999
Q ss_pred ---HH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH------HHHHHHHHCCC
Q ss_conf ---96-514875998654333211577899998998763022234301123102335225778------99987643589
Q gi|254780709|r 189 ---AQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR------QVEMFHAVAGT 258 (321)
Q Consensus 189 ---a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~------~a~~F~~~~~~ 258 (321)
.. ....=|+|||-|-.++ .+.+++|..+.+.-. .....-.++ ..||.-++ +...|.+.+.+
T Consensus 115 L~~~~~~g~~~vliIDEAq~L~--~~~Le~Lr~L~n~e~--~~~~ll~ii-----L~GqpeL~~~L~~~~~~~l~qRI~~ 185 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLT--PELLEELRMLSNFQT--DNAKLLQIF-----LVGQPEFRETLQSPQLQQLRQRIIA 185 (269)
T ss_pred HHHHHHCCCCEEEEEECHHHCC--HHHHHHHHHHHCCCC--CCCCCEEEE-----EECCHHHHHHHCCCCHHHHHHCEEE
T ss_conf 9999966994699972422199--999999999970135--888704899-----9578679998727402545550767
Q ss_pred CEEEEECCCCC
Q ss_conf 76999654578
Q gi|254780709|r 259 TGLIMTKMDGT 269 (321)
Q Consensus 259 ~g~I~TKlD~t 269 (321)
.+-+..|+..
T Consensus 186 -~~~L~pl~~e 195 (269)
T TIGR03015 186 -SCHLGPLDRE 195 (269)
T ss_pred -EEEECCCCHH
T ss_conf -9984799989
No 135
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=97.60 E-value=0.0019 Score=44.43 Aligned_cols=171 Identities=23% Similarity=0.302 Sum_probs=85.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999878520100121000136674123113544444247899999998522674267743451245688999997530
Q gi|254780709|r 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 (321)
Q Consensus 86 ~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~ 165 (321)
..|.+.+...+.+.. ...+.+--|.++|-+-|||.|-+-+| ..+.+. ++ ++.-
T Consensus 152 ~~L~~~i~~~l~~~~-----~~~~~~iriaiiGrpNvGKStl~N~l----l~~~r~--iv----------------s~~~ 204 (438)
T PRK00093 152 GDLLDAILELLPEEE-----EEEEDPIKIAIIGRPNVGKSTLINAL----LGEERV--IV----------------SDIA 204 (438)
T ss_pred HHHHHHHHHHCCCCC-----CCCCCCEEEEEECCCCCCHHHHHHHH----HHHHHH--HC----------------CCCC
T ss_conf 999999985488554-----34455605999558886556788876----543332--04----------------7999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 353212235866124542289999651487599865433---32115778999989987630222343011231023352
Q gi|254780709|r 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR---LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 (321)
Q Consensus 166 ~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR---~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g 242 (321)
|. -.|+..+.+ .-++..+.+|||||= ...+.. + |--.+.+.++... ..|-++||+||+.|
T Consensus 205 Gt-------TrD~i~~~~------~~~~~~~~~iDTaGirkk~k~~~~-i-E~~s~~~t~~~i~--~~dvvilviDa~~~ 267 (438)
T PRK00093 205 GT-------TRDSIDTPF------ERDGQKYTLIDTAGIRRRGKVTEG-I-EKYSVIRTLKAIE--RADVVLLVIDATEG 267 (438)
T ss_pred CC-------CCCCEEEEE------EECCCEEEEEECCCCCCCCCCCHH-H-HHHHHHHHHHHHH--HCCEEEEEEECCCC
T ss_conf 85-------112326799------989967999989898765642137-8-8999999999986--44669999976658
Q ss_pred HH--HHHHHHHHHHHCCCCEEEEECCCCCCCHHHH---------HHHHHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf 25--7789998764358976999654578706999---------9999997698899975--898132555
Q gi|254780709|r 243 QN--ALRQVEMFHAVAGTTGLIMTKMDGTARGGGL---------IPIVVTHKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 243 q~--~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~---------ls~~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
-. -...|....+.----=+++.|.|--.+.... -.......+||.|++. |++++.|-+
T Consensus 268 ~~~qD~~i~~~i~~~gk~~ii~vNKwDLv~~~~~~~~~~~~~i~~~l~~~~~~pIvfiSA~~g~gi~kl~~ 338 (438)
T PRK00093 268 ITEQDLRIAGLALEAGRALVIVVNKWDLVEKDSKTMEEVKEELRRRLPFLDFAPIVFISALTGQGVDKLFE 338 (438)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 84888999999998199669999702225663899999999999756125898779985147779999999
No 136
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0012 Score=45.95 Aligned_cols=121 Identities=18% Similarity=0.203 Sum_probs=63.2
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC-C-EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHH
Q ss_conf 667412311354444424789999999852267-4-267743451245688999997530353212235866-1245422
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-K-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYE 184 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~-k-V~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d-p~~v~~~ 184 (321)
..-|+.++|.||.|+||||++--+|+.+.-... . -.-..|+.. +........+++.....++ -..-+++
T Consensus 35 ~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC--------~~I~~g~h~DviEIdaasn~gIDeIRe 106 (613)
T PRK05896 35 NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC--------ESINTNQSVDIVELDAASNNGVDEIRN 106 (613)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH--------HHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 997622775589984889999999999669999999988888789--------998569999868840655578899999
Q ss_pred HHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 899996----5148759986543332115778999989987630222343011231023352257
Q gi|254780709|r 185 AFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 (321)
Q Consensus 185 a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~ 245 (321)
-++.+. ..+|-|+|||.|-+|..... +-| =|..+..|..+++++=.+--+..
T Consensus 107 Lie~~~~~P~~gkyKV~IIDEah~Ln~~Aa--NAL-------LKtLEEPP~~viFIL~Ttep~KL 162 (613)
T PRK05896 107 IIDNINYLPTTFKYKVYIIDEAHMLSTSAW--NAL-------LKTLEEPPKHVVFIFATTEFQKI 162 (613)
T ss_pred HHHHHCCCCCCCCCEEEEECCHHHCCHHHH--HHH-------HHHCCCCCCCCEEEEEECCHHHC
T ss_conf 999708587579945999816221799999--999-------98534898783799982881549
No 137
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0081 Score=40.08 Aligned_cols=106 Identities=21% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHC----CCCE---------------EEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 674123113544444247899999998522----6742---------------677434512456889999975303532
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA----GLKV---------------MLAAGDTFRSAAIDQLKIWADRTSADF 169 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~----g~kV---------------~lva~DtfR~aA~eQL~~~a~~~~v~~ 169 (321)
.-|+.++|.||.|+||||++--+|+.+.-. |..+ =++-.|.----.++|.+.+-+.+.
T Consensus 35 ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~i~~g~~~DviEidaas~~gVd~IRei~~~~~--- 111 (557)
T PRK07270 35 KISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKST--- 111 (557)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHC---
T ss_conf 95404421089986899999999999579998999988877799998758999748734777678899999999842---
Q ss_pred CCCCCCCCCHHHHHHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH
Q ss_conf 122358661245422899996-514875998654333211577899998998763022234301123102335225
Q gi|254780709|r 170 VCSEIGSDAAALAYEAFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 (321)
Q Consensus 170 ~~~~~~~dp~~v~~~a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~ 244 (321)
++- ..+|-|+|||-|-+|....- +-|- |..+..|..++|++=++--+.
T Consensus 112 ------------------~~P~~~~yKV~IIDEah~Ls~~A~--NALL-------KtLEEPP~~~vFIL~Ttep~k 160 (557)
T PRK07270 112 ------------------YAPSRATYKVYIIDEVHMLSTGAF--NALL-------KTLEEPTENVVFILATTELHK 160 (557)
T ss_pred ------------------CCCCCCCEEEEEECCHHHCCHHHH--HHHH-------HHHHCCCCCEEEEEEECCHHH
T ss_conf ------------------387778838999714453499999--9899-------985289987699998499475
No 138
>PRK08181 transposase; Validated
Probab=97.57 E-value=0.00079 Score=47.17 Aligned_cols=152 Identities=11% Similarity=0.192 Sum_probs=86.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH----HH-HHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99999999973889899999999999875127899899999----99-99878520100121000136674123113544
Q gi|254780709|r 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY----DV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 (321)
Q Consensus 46 leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~----~l-~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~n 120 (321)
.+++-..|++.-+...-.+.+..+++........+-+++.. .+ +..+..+.. ... .+ .+..-++|+||+
T Consensus 42 ~~e~L~~Lle~E~~~R~~rr~~rrlk~A~fp~~ktLe~fDf~~~p~i~~~~i~~L~~-~~~--fi---~~~~Nvil~Gp~ 115 (269)
T PRK08181 42 AARFLAAIAEHEIAERARRRIERHLAEAHLPPGKTLDSFDFEAVPMISKAQVMALAA-GDS--WL---AKGANLLLFGPP 115 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHC-CCH--HH---HCCCEEEEECCC
T ss_conf 999999999999999999999999986897998886547855689989999999965-675--88---648708998999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 44424789999999852267426774345124568899999753035321223586612454228999965148759986
Q gi|254780709|r 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 (321)
Q Consensus 121 G~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliD 200 (321)
|+|||--+.=||+..-++|++|..++++.. +++|+.- ...++ ..+.+. +..++|++|||
T Consensus 116 GtGKThLA~Alg~~A~~~G~~V~f~~~~~L----~~~L~~a----------~~~~~-----~~~~~~--~l~~~dLLIiD 174 (269)
T PRK08181 116 GGGKSHLAAAIGLALIENGWRVLFTRTTDL----VQKLQVA----------RRELQ-----LESAIA--KLDKFDLLILD 174 (269)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEHHHH----HHHHHHH----------HHCCC-----HHHHHH--HHHCCCEEEEH
T ss_conf 987889999999999987993999789999----9999997----------75583-----999999--97444601220
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 543332115778999989987630222
Q gi|254780709|r 201 TAGRLHNNSILMAGIGKMIRVLKRLDP 227 (321)
Q Consensus 201 TAGR~~~~~~lm~EL~ki~~v~~~~~~ 227 (321)
--|-.+.+..-.+ .+.++|....+
T Consensus 175 e~G~~~~~~~~~~---~lf~lI~~Rye 198 (269)
T PRK08181 175 DLAYVTKDQAETS---VLFELISARYE 198 (269)
T ss_pred HCCCCCCCHHHHH---HHHHHHHHHHC
T ss_conf 1056679989999---99999999857
No 139
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.56 E-value=0.0016 Score=45.07 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 41231135444442478999999985-22674267743451245688999997530353212235866124542289999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
-..+++.|.+|+||||.+--+|..+. ++|++|++++..--+- ----+..+...++|......+.....- ++.+..+
T Consensus 13 G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~~~--~~~~R~~s~~~~i~~~~i~~~~~~~~~-~~~~~~~ 89 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKE--QLLQRLLASESGISLSKLRTGSLSDED-WERLAEA 89 (242)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHHHHCCCHHHHHCCCCCHHH-HHHHHHH
T ss_conf 8189999689999999999999999997799599993335388--999999999829774553026522799-9999999
Q ss_pred H--HHCCCEEEEECCCC
Q ss_conf 6--51487599865433
Q gi|254780709|r 190 Q--AKKVDVLIIDTAGR 204 (321)
Q Consensus 190 ~--~~~~DvvliDTAGR 204 (321)
. ..+..+.+.|+.+.
T Consensus 90 ~~~~~~~~l~i~d~~~~ 106 (242)
T cd00984 90 IGELKELPIYIDDSSSL 106 (242)
T ss_pred HHHHCCCCEEEECCCCC
T ss_conf 99861698899669999
No 140
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.55 E-value=0.00048 Score=48.68 Aligned_cols=52 Identities=21% Similarity=0.121 Sum_probs=43.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 31135444442478999999985226742677434512456889999975303532
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~ 169 (321)
.|+.|++|+||||-+..+++...++|.+|+.++++-- .+|+...+..+|.++
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~----~~~l~~~~~~~g~d~ 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES----PEELIENAESLGWDL 53 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC----HHHHHHHHHHCCCCH
T ss_conf 1587689999999999999999876997899995079----999999999839985
No 141
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.53 E-value=0.0089 Score=39.81 Aligned_cols=174 Identities=18% Similarity=0.289 Sum_probs=92.6
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH-------HHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999-------75303532122358661245422
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW-------ADRTSADFVCSEIGSDAAALAYE 184 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~-------a~~~~v~~~~~~~~~dp~~v~~~ 184 (321)
-|.++.|==|+||||-+-.|-+ ...+++++++-=|-=. ..+|.--.- .-..|+ ++..-..|-..-..+
T Consensus 5 PVtiltGFLGaGKTTlL~~lL~--~~~~~riaVivNEfGe-v~iD~~li~~~~~~v~eL~nGC--iCCs~~~dl~~~l~~ 79 (317)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILN--EQHGYKIAVIENEFGE-VSVDDQLIGDRATQIKTLTNGC--ICCSRSNELEDALLD 79 (317)
T ss_pred CEEEEEECCCCCHHHHHHHHHH--CCCCCCEEEEEECCCC-CCCHHHHHHCCCCCEEEECCCC--EEEEECCHHHHHHHH
T ss_conf 8899830888899999999972--7789978999837614-5332988735653268844773--687305228999999
Q ss_pred HHHHHHHH--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH-HHCCCCEE
Q ss_conf 89999651--4875998654333211577899998998763022234301123102335225778999876-43589769
Q gi|254780709|r 185 AFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGL 261 (321)
Q Consensus 185 a~~~a~~~--~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~-~~~~~~g~ 261 (321)
-++..... .+|.|||-|.|- ..-..+++-+..- ..+.. ...-+-++=|+||..++.-.+.-..+. +..--|-+
T Consensus 80 l~~~~~~~~~~~D~IiIEtsGl-AdP~~I~~~~~~~-~~l~~--~~~Ld~vVtvVDa~~~~~~l~~~~~~~~Qi~~AD~i 155 (317)
T PRK11537 80 LLDNLDRGNIQFDRLVIECTGM-ADPGPIIQTFFSH-EVLCQ--RYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRI 155 (317)
T ss_pred HHHHHHCCCCCCCEEEEECCCC-CCHHHHHHHHHHH-HHHHH--HEECCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCEE
T ss_conf 9986643577754799962577-8839999998612-56565--320365599986655576653034667666318689
Q ss_pred EEECCCCCCCHHHHHHHHHH--HCCCEEEEECCCC
Q ss_conf 99654578706999999999--7698899975898
Q gi|254780709|r 262 IMTKMDGTARGGGLIPIVVT--HKIPVYFLGVGEG 294 (321)
Q Consensus 262 I~TKlD~ta~~G~~ls~~~~--~~~Pi~fig~Ge~ 294 (321)
+++|.|-.+.--.+...... ...||.....|+-
T Consensus 156 llnK~Dlv~~~~~l~~~l~~lNp~A~i~~~~~~~v 190 (317)
T PRK11537 156 LLTKTDVAGEAEKLRERLARINARAPVYTVTHGDI 190 (317)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 97420023659999999998689984899646878
No 142
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00061 Score=47.99 Aligned_cols=123 Identities=28% Similarity=0.345 Sum_probs=66.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
.|++|+.|+||||-+= ..|.+ |+.+ +|....+..... ....|+- | .
T Consensus 128 y~viG~pgsGKTtal~-------~sgl~--------Fpl~--~~~~~~~~~~~g-----T~~cdww---f------~--- 173 (1188)
T COG3523 128 YMVIGPPGSGKTTALL-------NSGLQ--------FPLA--EQMGALGLAGPG-----TRNCDWW---F------T--- 173 (1188)
T ss_pred EEEECCCCCCCCHHHH-------CCCCC--------CCCH--HHHCCCCCCCCC-----CCCCCCC---C------C---
T ss_conf 5885488898400875-------15536--------6615--553312226888-----7335754---2------5---
Q ss_pred CCEEEEECCCCCCCHH----HHHHHHHHHHHHHHCCCCCCCCE-EEEECCC---CCCHHHHH--------H-----HHHH
Q ss_conf 8759986543332115----77899998998763022234301-1231023---35225778--------9-----9987
Q gi|254780709|r 194 VDVLIIDTAGRLHNNS----ILMAGIGKMIRVLKRLDPHAPHS-VLQVLDA---TTGQNALR--------Q-----VEMF 252 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~----~lm~EL~ki~~v~~~~~~~~p~~-~~lVlda---~~gq~~~~--------~-----a~~F 252 (321)
-+-|+||||||..... .--.|=...-..+++.-...|.. +++.+|. +++..+.. + .+++
T Consensus 174 deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL 253 (1188)
T COG3523 174 DEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL 253 (1188)
T ss_pred CCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53489858752443667502348889998889997355788863799978999738999999999999999999999841
Q ss_pred HHHCCCCEEEEECCCCCCC
Q ss_conf 6435897699965457870
Q gi|254780709|r 253 HAVAGTTGLIMTKMDGTAR 271 (321)
Q Consensus 253 ~~~~~~~g~I~TKlD~ta~ 271 (321)
+-.+|+ -+.+||+|--..
T Consensus 254 ~~~~PV-Yl~lTk~Dll~G 271 (1188)
T COG3523 254 HARLPV-YLVLTKADLLPG 271 (1188)
T ss_pred CCCCCE-EEEEECCCCCCC
T ss_conf 567763-899862100215
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.52 E-value=0.00095 Score=46.61 Aligned_cols=142 Identities=23% Similarity=0.278 Sum_probs=73.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
+|.++|-.-+||||-+-+| . +.++.... ++.+.| .+..+..+ .. ...
T Consensus 2 ~VaivG~~n~GKSTL~n~L----~--~~~~~~~~-----~~g~T~--------~i~~~~~~-----~~---------~~~ 48 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKI----R--KTNVAAGE-----AGGITQ--------HIGAFEVP-----AE---------VLK 48 (168)
T ss_pred EEEEEECCCCCHHHHHHHH----H--CCCCCEEE-----CCCCEE--------EECEEEEE-----EE---------ECC
T ss_conf 8999948998598999998----5--86750451-----698168--------71539999-----88---------258
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHCCC-CEEEEECCCC-
Q ss_conf 4875998654333211577899998998763022234301123102335225--77899987643589-7699965457-
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVAGT-TGLIMTKMDG- 268 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~~~-~g~I~TKlD~- 268 (321)
+..+.+|||+| |.+. .++.. +... .-+-.+||+||..|-. -.+.++.... .+. -=++++|+|-
T Consensus 49 ~~~i~~iDTPG--h~~f---~~~~~--~~~~-----~aD~~ilvvda~~g~~~~~~~~~~~l~~-~~~p~ivviNKiD~~ 115 (168)
T cd01887 49 IPGITFIDTPG--HEAF---TNMRA--RGAS-----LTDIAILVVAADDGVMPQTIEAIKLAKA-ANVPFIVALNKIDKP 115 (168)
T ss_pred CCEEEEEECCC--CHHH---HHHHH--HHHH-----HCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCC
T ss_conf 87189998998--1677---99999--9986-----2688999986466754589999999987-699789999893089
Q ss_pred CCCHHHHHHHHHHH----------CCCEEEEEC--CCCCCCCCC
Q ss_conf 87069999999997----------698899975--898132555
Q gi|254780709|r 269 TARGGGLIPIVVTH----------KIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 269 ta~~G~~ls~~~~~----------~~Pi~fig~--Ge~i~Dl~~ 300 (321)
.+..--+....... ..|+.+++. |+++++|..
T Consensus 116 ~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG~gi~~L~~ 159 (168)
T cd01887 116 NANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred CCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 87989999999997545245528987599998999989999999
No 144
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.51 E-value=0.012 Score=38.86 Aligned_cols=168 Identities=18% Similarity=0.243 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-C----------------C----------CHHH---H-------HH
Q ss_conf 9999999999973889899999999999875127-8----------------9----------9899---9-------99
Q gi|254780709|r 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-D----------------V----------SVQR---V-------LY 86 (321)
Q Consensus 44 ~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~-~----------------i----------~~~~---i-------~~ 86 (321)
+-.+++++.+-.+.+..++-+.+...+.+-..-. . + +... + +.
T Consensus 249 ~e~~~~~~ki~~~~~p~~~~~~~~~El~rl~~~~~~s~E~~v~r~YLd~l~~LPW~~~t~d~~dl~~A~~iLd~dHyGL~ 328 (784)
T PRK10787 249 DENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLE 328 (784)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHH
T ss_conf 48999999998779998999999999999971899894188999999999759988887875699999998765430657
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----------CCCC---CHH
Q ss_conf 999987852010012100013667412311354444424789999999852267426774----------3451---245
Q gi|254780709|r 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA----------GDTF---RSA 153 (321)
Q Consensus 87 ~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva----------~Dtf---R~a 153 (321)
.+++-|.+.|.-. ....+.+..+++||||.|||||+-.--+|.-+.++=.++-|.. --|| -||
T Consensus 329 ~vKeRile~lAv~----~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgampG 404 (784)
T PRK10787 329 RVKDRILEYLAVQ----SRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPG 404 (784)
T ss_pred HHHHHHHHHHHHH----HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCH
T ss_conf 7999999999999----862467787799646998772469999999858986998068878888825643343443683
Q ss_pred H-HHHHHHHHHHHCC------CCCCCCCCCCCHHHHHHHHHHHHHHC------------CCEEEEECCCCCCCHHHHHHH
Q ss_conf 6-8899999753035------32122358661245422899996514------------875998654333211577899
Q gi|254780709|r 154 A-IDQLKIWADRTSA------DFVCSEIGSDAAALAYEAFKQAQAKK------------VDVLIIDTAGRLHNNSILMAG 214 (321)
Q Consensus 154 A-~eQL~~~a~~~~v------~~~~~~~~~dp~~v~~~a~~~a~~~~------------~DvvliDTAGR~~~~~~lm~E 214 (321)
- ++.|+.-+...-| +=.+.....||++..-+-++--++.. .+|++|-||--+..-..|.+-
T Consensus 405 rii~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~~ip~pLlDR 484 (784)
T PRK10787 405 KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDR 484 (784)
T ss_pred HHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCCCCCHHHHHH
T ss_conf 89999997489885665003555224558998899998459765564000322046452225899732767787677631
Q ss_pred H
Q ss_conf 9
Q gi|254780709|r 215 I 215 (321)
Q Consensus 215 L 215 (321)
|
T Consensus 485 m 485 (784)
T PRK10787 485 M 485 (784)
T ss_pred E
T ss_conf 2
No 145
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=97.50 E-value=8.8e-05 Score=53.86 Aligned_cols=45 Identities=31% Similarity=0.392 Sum_probs=39.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3544444247899999998522674267743451245688999997530353
Q gi|254780709|r 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 (321)
Q Consensus 117 vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~ 168 (321)
.|==|||||||.|=|+.=|.+.|+||.+|-+|. =||.+==.||.+
T Consensus 8 SGKGGVGKTTtTANlG~aLA~lG~kVvliD~Di-------GLRNLD~~lGLE 52 (272)
T TIGR01968 8 SGKGGVGKTTTTANLGTALARLGKKVVLIDADI-------GLRNLDLLLGLE 52 (272)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC-------CCHHHHHHHCCC
T ss_conf 178897735898999999996198289995475-------703457774231
No 146
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=97.50 E-value=0.00011 Score=53.32 Aligned_cols=43 Identities=30% Similarity=0.577 Sum_probs=39.9
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 7412311354444424789999999852267426774345124
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~ 152 (321)
++.||.|.|+.||||||-+.+|..+++.+|.+|.++-.|.+|.
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R~ 43 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRH 43 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHC
T ss_conf 9889998898999999999999999997599779976887750
No 147
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.49 E-value=0.0047 Score=41.73 Aligned_cols=148 Identities=21% Similarity=0.181 Sum_probs=79.5
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3113544444247899999998522--67426774345124568899999753035321223586612454228999965
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~--g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
|.++|--++||||-+..|-...... +..+--...|.. ..||-+ |+.+ ++...- +.-
T Consensus 2 v~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~---~~E~~r------giTi-------~~~~~~------~~~ 59 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVL---KEERER------GITI-------KSGVAT------FEW 59 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCC---HHHHHC------CCEE-------EEEEEE------EEE
T ss_conf 899917998999999999976472356862588850577---788863------8413-------222799------998
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 1487599865433321157789999899876302223430112310233522-----57789998764358976999654
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEMFHAVAGTTGLIMTKM 266 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~F~~~~~~~g~I~TKl 266 (321)
+++-+.+|||+| | .+.+.+.. +.+. ..+-.+||+||+.|- ..+..++.++ +| -=++++|+
T Consensus 60 ~~~~i~~iDTPG--h--~~f~~~~~---~~l~-----~aD~ailvVda~~G~~~qt~~~~~~~~~~~--~p-~iv~iNKi 124 (189)
T cd00881 60 PDRRVNFIDTPG--H--EDFSSEVI---RGLS-----VSDGAILVVDANEGVQPQTREHLRIAREGG--LP-IIVAINKI 124 (189)
T ss_pred CCEEEEEEECCC--C--HHHHHHHH---HHHH-----HCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CC-EEEEEECC
T ss_conf 998999996998--1--88999999---9986-----468569999879899878999999999769--98-79999897
Q ss_pred CCCC--CHH-HHHHHHHH-----------------HCCCEEEEEC--CCCCCCC
Q ss_conf 5787--069-99999999-----------------7698899975--8981325
Q gi|254780709|r 267 DGTA--RGG-GLIPIVVT-----------------HKIPVYFLGV--GEGINDL 298 (321)
Q Consensus 267 D~ta--~~G-~~ls~~~~-----------------~~~Pi~fig~--Ge~i~Dl 298 (321)
|-.. +.- ..-.+... ...||.+++- |+++++|
T Consensus 125 D~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~~piv~iSA~~G~gv~~L 178 (189)
T cd00881 125 DRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHH
T ss_conf 187756299999999999875321023211012588775999888678697999
No 148
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0039 Score=42.35 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=21.9
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6741231135444442478999999985
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
.-|+.++|.||.|+||||++--+|..+.
T Consensus 36 ri~HAyLF~GprGtGKts~Ari~AkaLn 63 (563)
T PRK06674 36 KVSHAYLFSGPRGTGKTSIAKVFAKAVN 63 (563)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9650343128998689999999999857
No 149
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.49 E-value=0.0041 Score=42.18 Aligned_cols=171 Identities=18% Similarity=0.224 Sum_probs=94.5
Q ss_pred EECCCCC-CCCHHHHHHHHHHHHHHCCCCEEE--EECCCCCHHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf 3113544-444247899999998522674267--7434512456889999975303532122358-66124542289999
Q gi|254780709|r 114 ILVVGVN-GVGKTTVIGKLSKKMSDAGLKVML--AAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQA 189 (321)
Q Consensus 114 il~vG~n-G~GKTTT~aKLA~~~~~~g~kV~l--va~DtfR~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~v~~~a~~~a 189 (321)
+++.|+. |+||||-+.=|.+.++++|.+|.- +--|---| ..+....|.|.+.-..- ..+..| ....
T Consensus 4 ilIAa~~SgsGKTtvt~gL~~aL~~rG~~Vq~FK~GPDYIDP------~~h~~a~G~~~~NLD~~m~~~~~v-~~~~--- 73 (432)
T PRK13896 4 VVLAGTSSGVGKTVATLAVLQALADAGYDVQPAKAGPDFIDP------SHHEAVVDTPSRSLDPWLSGEDGM-RRTY--- 73 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH------HHHHHHHCCCCCCCCHHHCCHHHH-HHHH---
T ss_conf 899778999989999999999999784963766668475198------999999689844689101898999-9999---
Q ss_pred HHHCCCEEEEECCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC-CCHHHHHHHHHHHHH-------CCCCE
Q ss_conf 651487599865433321-157789999899876302223430112310233-522577899987643-------58976
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHN-NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT-TGQNALRQVEMFHAV-------AGTTG 260 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~-~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~-~gq~~~~~a~~F~~~-------~~~~g 260 (321)
.....|+.+|.-.==+.- +..=-.|+.++- + --++||+|+. ..+.+.-+++-|.++ +++-|
T Consensus 74 ~~~~aDiaviEGvMGLyDG~~~Sta~lA~~l---~-------~PVvLVvd~~~~~~s~aA~v~G~~~f~~~~~~d~~iaG 143 (432)
T PRK13896 74 WRGTGDVCVVEGMMGLYDGTVASTAAVAEEL---D-------LPVVLVVDAKAGMESVAATALGFQAYADRAGVDIDVAG 143 (432)
T ss_pred HHCCCCEEEEEECCCCCCCCCCCHHHHHHHH---C-------CCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 7279986999612324578877589999984---9-------99899993320188899999999972412476524766
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 99965457870699999999976988999758981325557789999987286
Q gi|254780709|r 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 (321)
Q Consensus 261 ~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~ 313 (321)
||+.++-+......+-..+.. ++|+ +|.=.+.+++. +-+|=||+
T Consensus 144 VIlN~v~s~rh~~~l~~al~~-~i~v--lG~lPr~~~l~------lp~RHLGL 187 (432)
T PRK13896 144 VLAQRAHGGRHADGIRDALPD-ELTY--FGRVPPRSDLE------IPDRHLGL 187 (432)
T ss_pred EEECCCCCHHHHHHHHHHHHC-CCCE--EEEECCCCCCC------CCCCCCCC
T ss_conf 884267758899999999870-8948--98842477789------84102598
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.48 E-value=0.0047 Score=41.74 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCC-CCCCCHHHHHH
Q ss_conf 6674-1231135444442478999999985226742677434512456889999975303532-1223-58661245422
Q gi|254780709|r 108 SHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSE-IGSDAAALAYE 184 (321)
Q Consensus 108 ~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~-~~~dp~~v~~~ 184 (321)
+++| ..+||+||+|||||-++-.||.++-..... ||..|- .=+-.=-..+.-+|.|= |.+. .|. ...+
T Consensus 592 ~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~--liR~DM---SEy~E~hsvsrLiGaPPGYVGy~eGG----~LTe 662 (852)
T TIGR03345 592 PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQN--LITINM---SEFQEAHTVSRLKGSPPGYVGYGEGG----VLTE 662 (852)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC--EEEECC---HHHCCHHHHHHHCCCCCCCCCCCCCC----HHHH
T ss_conf 99985689987899877899999999997198611--478422---43210436878638999766748777----2109
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCHHHH
Q ss_conf 8999965148759986543332115-77899998998763022-23430112310233522577
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTAGRLHNNS-ILMAGIGKMIRVLKRLD-PHAPHSVLQVLDATTGQNAL 246 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTAGR~~~~~-~lm~EL~ki~~v~~~~~-~~~p~~~~lVlda~~gq~~~ 246 (321)
++ +.+-|-|||.|---.-|-|. |++-++-.--+.-.... ...--.++.++-++.|.+.+
T Consensus 663 ~V---rr~PysVvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtIIImTSN~Gs~~i 723 (852)
T TIGR03345 663 AV---RRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLI 723 (852)
T ss_pred HH---HHCCCEEEEECHHHHCCHHHHHHHHHHHCCCEEECCCCCEEECEEEEEEECCCHHHHHH
T ss_conf 88---80998688861130028899999998724677757999988452129997572447999
No 151
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.46 E-value=0.00022 Score=51.11 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=50.8
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3113544444247899999998522674267743451245688999997530353212-235866124542289999651
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~-~~~~~dp~~v~~~a~~~a~~~ 192 (321)
|+|+|..+|||||.+..|+.++..+|++|.+|.-|+.+..-- .|. ...+...-+..+.+++.+..+
T Consensus 2 ivl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~d~~~~~~~~-------------~y~~s~~Ek~~R~~l~s~v~r~Ls~ 68 (266)
T pfam08433 2 IILTGLPSSGKSTRAKELAKYLEEKGYDVIVISDESLGIESD-------------DYKDSKKEKFLRGSLRSAVKRDLSK 68 (266)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 798579999688999999999997599389978001267531-------------0001047899999999999875166
Q ss_pred CCCEEEEEC
Q ss_conf 487599865
Q gi|254780709|r 193 KVDVLIIDT 201 (321)
Q Consensus 193 ~~DvvliDT 201 (321)
+ ++||+|.
T Consensus 69 ~-~iVIlD~ 76 (266)
T pfam08433 69 N-TIVIVDS 76 (266)
T ss_pred C-CEEEECC
T ss_conf 8-8899548
No 152
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.00091 Score=46.76 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=59.9
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHH
Q ss_conf 667412311354444424789999999852-2674267743451245688999997530353212235866-12454228
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEA 185 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~-~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d-p~~v~~~a 185 (321)
..-|+.++|.||.|+||||++--+|+.+.- .+.. --+|+.-+. -+...+....+++.....+. -..-+++-
T Consensus 33 ~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~--~~PCg~C~s-----C~~i~~g~hpDViEiDaasn~gID~IReL 105 (523)
T PRK08451 33 NRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPS--STPCGTCAQ-----CQAALEGRHIDIIEMDAASNRGIDDIRNL 105 (523)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCHH-----HHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 99671587578998688999999999975999999--898887888-----99986489998551055333689999999
Q ss_pred HHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 99996----5148759986543332115778999989987630222343011231023352
Q gi|254780709|r 186 FKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 (321)
Q Consensus 186 ~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g 242 (321)
++.+. ..+|-|+|||-|-+|+...- +-| =|..+..|..+++++ +||-
T Consensus 106 ie~~~~~P~~gryKV~IIDEah~Lt~~A~--NAL-------LKTLEEPP~~vvFIL-aTTe 156 (523)
T PRK08451 106 IEQTKYKPSMARFKIFIIDEVHMLTKEAF--NAL-------LKTLEEPPSYVKFIL-ATTD 156 (523)
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCHHHH--HHH-------HHHCCCCCCCCEEEE-ECCC
T ss_conf 99723588679727999826030489999--999-------997038987837999-7599
No 153
>PRK06696 uridine kinase; Validated
Probab=97.43 E-value=0.00016 Score=52.03 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=41.4
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 66741231135444442478999999985226742677434512456
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA 154 (321)
.++|.+|.+-|+.||||||-+.+||..+...|..|+.+..|-|=-..
T Consensus 23 p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~ 69 (227)
T PRK06696 23 LTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPK 69 (227)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 99868999778998787999999999997469948997154434737
No 154
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.43 E-value=0.00036 Score=49.59 Aligned_cols=116 Identities=25% Similarity=0.309 Sum_probs=63.7
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEC----CCCCHH------HHHHHHHHHHHHCCC-C-CCCCCCCCCHH
Q ss_conf 31135444442478999999985226742-67743----451245------688999997530353-2-12235866124
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAG----DTFRSA------AIDQLKIWADRTSAD-F-VCSEIGSDAAA 180 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV-~lva~----DtfR~a------A~eQL~~~a~~~~v~-~-~~~~~~~dp~~ 180 (321)
|++.|+.|+||||-+-|++..++..|.+| ++.+- +-.|.| +-.+ +.|-.+.+.+ . -.+.+.-++.+
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~GF~iv~l~~g~-~~~la~~~~~~~~~vGky~v~~~~ 80 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIGFDIVDLASGE-RGPLARVGGVSGPRVGKYVVNLEE 80 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEEEEEEEECCCCC-EEEEEEECCCCCCCCCCCEECHHH
T ss_conf 8997899988999999999999867970748993021258937899999904782-677444068877545771666899
Q ss_pred ---HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf ---5422899996514875998654333211577899998998763022234301123102
Q gi|254780709|r 181 ---LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 (321)
Q Consensus 181 ---v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVld 238 (321)
++-.++..+ ....|+++||--|+|........+ .+.++++ + +.-++.|+.
T Consensus 81 fe~~~~~~L~~a-~~~~dlivIDEIG~mEl~s~~F~~--~v~~~l~---~--~~~vl~ti~ 133 (168)
T pfam03266 81 FEEIALPALRRA-LEEADLIIIDEIGPMELKSPKFRE--AIEEVLS---S--NKPVLAVVH 133 (168)
T ss_pred HHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHH--HHHHHHC---C--CCCEEEEEE
T ss_conf 999999999840-668989999763145331499999--9999966---9--997999997
No 155
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.43 E-value=0.003 Score=43.08 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=65.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHC-----CC--CCCCCCC-------
Q ss_conf 1231135444442478999999985226--742677434512456889999975303-----53--2122358-------
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTS-----AD--FVCSEIG------- 175 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g--~kV~lva~DtfR~aA~eQL~~~a~~~~-----v~--~~~~~~~------- 175 (321)
..+++.+++|+|||++...++.++..++ .+|+++ +. |...++|....-+... .. ++.....
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~-~P--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVL-VP--TRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL 101 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-EC--CHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHH
T ss_conf 988998999960999999999998633899759999-08--599999999886010210204455652477379999999
Q ss_pred -CCCHHHHHHH---HHHH------HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH
Q ss_conf -6612454228---9999------65148759986543332115778999989987630222343011231023352257
Q gi|254780709|r 176 -SDAAALAYEA---FKQA------QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 (321)
Q Consensus 176 -~dp~~v~~~a---~~~a------~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~ 245 (321)
.....|..-+ +... ...++++|+||=|=+.... .....+..+...+ .+.-.++.++||-..+.
T Consensus 102 ~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~~~~~~------~~~~~~i~lSAT~~~~~ 174 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLL------PKNVQLLLLSATPPEEI 174 (201)
T ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCC-CCHHHHHHHHHHC------CCCCCEEEECCCCCHHH
T ss_conf 7599989995589999999727545254319999896775125-7099999999967------99997899924898689
Q ss_pred HHHHHHHH
Q ss_conf 78999876
Q gi|254780709|r 246 LRQVEMFH 253 (321)
Q Consensus 246 ~~~a~~F~ 253 (321)
.+....|.
T Consensus 175 ~~~~~~~~ 182 (201)
T smart00487 175 ENLLELFL 182 (201)
T ss_pred HHHHHHHC
T ss_conf 99999978
No 156
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.43 E-value=0.0013 Score=45.59 Aligned_cols=134 Identities=22% Similarity=0.192 Sum_probs=66.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH------HHCC--CCC--CCC----CCCCCH
Q ss_conf 31135444442478999999985226742677434512456889999975------3035--321--223----586612
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------RTSA--DFV--CSE----IGSDAA 179 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~------~~~v--~~~--~~~----~~~dp~ 179 (321)
|.++|.-.+||||.++-|-.- ..|.-|-.|...+-.|-. -..+ .++ ... ...++.
T Consensus 2 v~v~GhVD~GKSTL~G~Lt~g-----------~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~ 70 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQG-----------ELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNH 70 (224)
T ss_pred EEEEECCCCCHHHHHHHHHCC-----------CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCC
T ss_conf 899948588488999998567-----------742221067778776189997265441156554010145320213476
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-----HHHHHHHHHH
Q ss_conf 45422899996514875998654333211577899998998763022234301123102335225-----7789998764
Q gi|254780709|r 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN-----ALRQVEMFHA 254 (321)
Q Consensus 180 ~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~-----~~~~a~~F~~ 254 (321)
.. ..+.+.+...+.-+.+||++|--..-.+.+.-+ ....||..+||++|..|-. -+..+...
T Consensus 71 ~~-~~~~~~~~~~~k~it~iD~pGH~~y~kt~i~G~----------~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l-- 137 (224)
T cd04165 71 LS-ESDIEICEKSSKLVTFIDLAGHERYLKTTLFGL----------TGYAPDYAMLVVAANAGIIGMTKEHLGLALAL-- 137 (224)
T ss_pred CC-CCCEEEECCCCCEEEEEECCCHHHHHHHHHHHH----------HCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH--
T ss_conf 54-422012136786799997887399999999876----------35568989999317889779999999999983--
Q ss_pred HCCCCEEEEECCCCCCCH
Q ss_conf 358976999654578706
Q gi|254780709|r 255 VAGTTGLIMTKMDGTARG 272 (321)
Q Consensus 255 ~~~~~g~I~TKlD~ta~~ 272 (321)
.+|+ -+++||+|-..+.
T Consensus 138 ~ip~-~vvitKiDl~~~~ 154 (224)
T cd04165 138 NIPV-FVVVTKIDLAPAN 154 (224)
T ss_pred CCCE-EEEEECCCCCCHH
T ss_conf 9998-9999897768989
No 157
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.43 E-value=0.0013 Score=45.76 Aligned_cols=146 Identities=19% Similarity=0.257 Sum_probs=78.5
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC-------CCCHHHHHHH
Q ss_conf 231135444442478999999985226742677434512456889999975303532122358-------6612454228
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-------SDAAALAYEA 185 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~-------~dp~~v~~~a 185 (321)
|.++.|-=|+||||.+-++... ..|++++++--|.=..+ +|.--. ...+.+++.-..| .|-..-..+.
T Consensus 2 v~iitGFLGaGKTTll~~lL~~--~~~~~~avIvNEfG~~~-ID~~ll--~~~~~~v~el~~GCiCCs~~~dl~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE--QHGRKIAVIENEFGEVG-IDNQLV--VDTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHHC--CCCCCEEEEEECCCCCC-CCHHHH--HCCCCEEEEECCCEEEEECCCHHHHHHHHH
T ss_conf 0899848889999999999847--88997799970765546-316676--378824999338714652251589999999
Q ss_pred HHHHH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCCCEEE
Q ss_conf 99996--51487599865433321157789999899876302223430112310233522577899-9876435897699
Q gi|254780709|r 186 FKQAQ--AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLI 262 (321)
Q Consensus 186 ~~~a~--~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~~~~g~I 262 (321)
++... ...+|.|+|-|.|=-+ -.++++-+.. ...+. ..-..+-++-|+||.......+.. ....+...-+-++
T Consensus 77 ~~~~~~~~~~~d~iiIE~SGla~-P~~i~~~~~~-~~~l~--~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD~iv 152 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLAD-PGPVAQTFFM-DEELA--ERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRIL 152 (158)
T ss_pred HHHHHCCCCCCCEEEEECCCCCC-CHHHHHHHHC-CHHHH--CEEECCCEEEEECHHHHHHHHHCCHHHHHHHHHCCEEE
T ss_conf 99765157887889996368788-2899998860-71432--10743876999818987764324469999999689999
Q ss_pred EECCC
Q ss_conf 96545
Q gi|254780709|r 263 MTKMD 267 (321)
Q Consensus 263 ~TKlD 267 (321)
++|.|
T Consensus 153 lnK~D 157 (158)
T cd03112 153 LNKTD 157 (158)
T ss_pred EECCC
T ss_conf 96677
No 158
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.43 E-value=0.0025 Score=43.65 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=64.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321---223586612454228999
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---CSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~---~~~~~~dp~~v~~~a~~~ 188 (321)
.++.+.|+.++||||.+..+.+..++.|..|+.+-+- .+-- ..|++.+||++= ..++ |.+.-+++.++.
T Consensus 53 Ri~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E--~a~d----~~~a~~lGVD~~~l~~~qp--d~~Eqal~i~~~ 124 (322)
T pfam00154 53 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE--HALD----PVYAKKLGVDIDNLLVSQP--DTGEQALEIADM 124 (322)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH--HHCC----HHHHHHCCCCHHHEEEECC--CHHHHHHHHHHH
T ss_conf 0899988987778999999999997349938998536--6059----8899980988025389778--839999999999
Q ss_pred HHH-HCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 965-14875998654333211577899
Q gi|254780709|r 189 AQA-KKVDVLIIDTAGRLHNNSILMAG 214 (321)
Q Consensus 189 a~~-~~~DvvliDTAGR~~~~~~lm~E 214 (321)
... ...|+|++|.-|-+....++-.+
T Consensus 125 li~~~~~~liViDSvaal~p~~E~e~~ 151 (322)
T pfam00154 125 LVRSGAVDLIVVDSVAALVPKAEIEGE 151 (322)
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 853799765998253456768887524
No 159
>KOG1532 consensus
Probab=97.43 E-value=0.00049 Score=48.64 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=37.5
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 3667412311354444424789999999852267426774345
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
...+|.+|+++|--||||||-+-+|-.++..++..+-+|..|.
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDP 57 (366)
T KOG1532 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDP 57 (366)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 5568707999944778841399999999862369980886788
No 160
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.42 E-value=0.0035 Score=42.67 Aligned_cols=128 Identities=17% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCC-CCCCCHHHHH
Q ss_conf 36674-1231135444442478999999985226742677434512456889999975303532-1223-5866124542
Q gi|254780709|r 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSE-IGSDAAALAY 183 (321)
Q Consensus 107 ~~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~-~~~dp~~v~~ 183 (321)
.+++| ..+||+||+|||||-++-.||.++-..... |+..|-- -+-.=-..+.-+|.|= |.+. .|.. ..
T Consensus 534 ~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~--liR~DMS---Ey~E~hsvsrLIGaPPGYVGy~eGG~----LT 604 (823)
T CHL00095 534 NPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEA--MIRLDMS---EYMEKHTVSKLIGSPPGYVGYNEGGQ----LT 604 (823)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC--EEEECCC---CCCCCCCHHHHCCCCCCCCCCCCCCC----HH
T ss_conf 899974689987899887799999999997478202--5885351---01554207674589987667787882----01
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHCCCC-CCCCEEEEECCCCCCHHHH
Q ss_conf 2899996514875998654333211-5778999989987630222-3430112310233522577
Q gi|254780709|r 184 EAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDP-HAPHSVLQVLDATTGQNAL 246 (321)
Q Consensus 184 ~a~~~a~~~~~DvvliDTAGR~~~~-~~lm~EL~ki~~v~~~~~~-~~p~~~~lVlda~~gq~~~ 246 (321)
+++ +.+-|-|||.|-----|-| -|++-++-.=-+.-..... ..---+++++-++.|...+
T Consensus 605 eaV---rr~PysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~NtIIImTSNlGs~~i 666 (823)
T CHL00095 605 EAV---RKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVI 666 (823)
T ss_pred HHH---HCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEECCCCCHHHH
T ss_conf 988---71998699862131138899998876516884348999988431039997165055888
No 161
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.42 E-value=0.012 Score=38.93 Aligned_cols=144 Identities=23% Similarity=0.237 Sum_probs=71.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCEEECCCCCCCCHHHHHHH
Q ss_conf 73889899999999999875127-8998999999999878520100121000136---6741231135444442478999
Q gi|254780709|r 55 RSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130 (321)
Q Consensus 55 ~ADVg~~va~~Iie~ik~~~~~~-~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~---~~p~vil~vG~nG~GKTTT~aK 130 (321)
...++...+++|++..++..... -.+..++...-+ .+..+ .-....++.-.. ..-.|.=+.|+.|+|||.-|--
T Consensus 45 ~~gis~~~a~ki~~~a~~~~~~~~f~Ta~el~~~r~-~~~~i-sTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~q 122 (318)
T PRK04301 45 IAGISESTAAKIIEAAREALDIGGFETALEVLERRK-SIGKI-TTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQ 122 (318)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-CCCCC-CCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 509999999999999998536579826999999863-47824-7888788805479833670788866887870356677
Q ss_pred HHHHHH---HC---CCCEEEEEC-CCCCHHHHHHHHHHHHHHCCC--------CCCCCCCCC-CHHHHHHHHHHHHH-HC
Q ss_conf 999985---22---674267743-451245688999997530353--------212235866-12454228999965-14
Q gi|254780709|r 131 LSKKMS---DA---GLKVMLAAG-DTFRSAAIDQLKIWADRTSAD--------FVCSEIGSD-AAALAYEAFKQAQA-KK 193 (321)
Q Consensus 131 LA~~~~---~~---g~kV~lva~-DtfR~aA~eQL~~~a~~~~v~--------~~~~~~~~d-p~~v~~~a~~~a~~-~~ 193 (321)
||-..+ .. +.+|+.|.+ .||||-=+.|+ |++.+.+ +|....+.+ -..++..+...... +.
T Consensus 123 Lav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qi---a~~~g~d~~~~L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~ 199 (318)
T PRK04301 123 LAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQM---AEGLGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGNN 199 (318)
T ss_pred HHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHH---HHHHCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 67653376777898863799956898697999999---998499978986402686139989999999999999962788
Q ss_pred CCEEEEECCC
Q ss_conf 8759986543
Q gi|254780709|r 194 VDVLIIDTAG 203 (321)
Q Consensus 194 ~DvvliDTAG 203 (321)
+.+|+||++-
T Consensus 200 v~LvVvDSi~ 209 (318)
T PRK04301 200 IKLVIVDSLT 209 (318)
T ss_pred CEEEEEECCH
T ss_conf 0499994342
No 162
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.41 E-value=0.00015 Score=52.19 Aligned_cols=46 Identities=33% Similarity=0.623 Sum_probs=42.6
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 6674123113544444247899999998522674267743451245
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~a 153 (321)
.++|.||-|.|+.||||||-+-+|...+.+.|.++.++-+|.+|.+
T Consensus 21 ~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~~ 66 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRHG 66 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf 8998699987999998899999999999975997599777999874
No 163
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.004 Score=42.23 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 98999999999878520100121000136674123113544444247899999998522674267743451245688999
Q gi|254780709|r 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 (321)
Q Consensus 80 ~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~ 159 (321)
..+.++..|+..+..-=.....+ ....+.-.+-++|+||.|+||||++--+|..+.-.+... .+|..-+.- +.-
T Consensus 9 GQe~v~~~L~~A~~~~R~~~~~~-~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~--~~cg~C~~C---~~i 82 (395)
T PRK07940 9 GQDAVVAELRAAARAARADSAHS-AAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGV--PGCGECRAC---RTV 82 (395)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCHHH---HHH
T ss_conf 92999999999998363434433-334687660376368998788999999999966999999--999878789---998
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 9975303532122358661245422899996----514875998654333211577899998998763022234301123
Q gi|254780709|r 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 (321)
Q Consensus 160 ~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~l 235 (321)
.-+..-++-++..+..+-...=+++-++.+. ..+|-|+|||-|-||..... +.+=|..+..|..+++
T Consensus 83 ~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~---------NalLKtLEEPp~~~~f 153 (395)
T PRK07940 83 LAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAA---------NALLKAVEEPPPRTVW 153 (395)
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHH---------HHHHHHHCCCCCCEEE
T ss_conf 7689987189826877688999999999985273037955999807787489999---------9999852178888699
Q ss_pred ECCCCCCHHHHHHHHHHHHHC
Q ss_conf 102335225778999876435
Q gi|254780709|r 236 VLDATTGQNALRQVEMFHAVA 256 (321)
Q Consensus 236 Vlda~~gq~~~~~a~~F~~~~ 256 (321)
++=++..+..+..+..=.+.+
T Consensus 154 iL~t~~~~~llpTI~SRcq~~ 174 (395)
T PRK07940 154 LLCAPSVEDVLPTIRSRCRHV 174 (395)
T ss_pred EEEECCHHHHHHHHHHHHEEC
T ss_conf 987399787446887440002
No 164
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.41 E-value=0.004 Score=42.21 Aligned_cols=145 Identities=23% Similarity=0.339 Sum_probs=73.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 13544444247899999998522674267743451245688999997530353212235866124542289999651487
Q gi|254780709|r 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 (321)
Q Consensus 116 ~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~D 195 (321)
++|..++||+|-+-.|. |.++..++- .-+. + .||.....+ ......
T Consensus 1 ivG~~N~GKStL~N~L~------~~~~~~vs~----------------~~gt---T----~~~~~~~~~-----~~~~~~ 46 (163)
T cd00880 1 LFGRTNAGKSSLLNALL------GQEVAIVSP----------------VPGT---T----TDPVEYVWE-----LGPLGP 46 (163)
T ss_pred CCCCCCCCHHHHHHHHH------CCCCCEECC----------------CCCE---E----CCCEEEEEE-----ECCCCE
T ss_conf 91979989999999995------899610169----------------8998---6----564589999-----547865
Q ss_pred EEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH--HHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 59986543332115778999-98998763022234301123102335225778--9998764358976999654578706
Q gi|254780709|r 196 VLIIDTAGRLHNNSILMAGI-GKMIRVLKRLDPHAPHSVLQVLDATTGQNALR--QVEMFHAVAGTTGLIMTKMDGTARG 272 (321)
Q Consensus 196 vvliDTAGR~~~~~~lm~EL-~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~--~a~~F~~~~~~~g~I~TKlD~ta~~ 272 (321)
+.++||+|=..... ...+. ++..+.+. ..+-+++|+||+.+....+ ..+...+.-.-.=+|++|.|--..-
T Consensus 47 i~lvDtpG~~~~~~-~~~~~~~~~~~~~~-----~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~ 120 (163)
T cd00880 47 VVLIDTPGIDEAGG-LGREREELARRVLE-----RADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred EEEEECCCCCCCCC-HHHHHHHHHHHHHH-----HCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHH
T ss_conf 99972798522231-01689999999998-----6898999987899975566999999997197427885342067878
Q ss_pred --HHHHH-----HHHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf --99999-----99997698899975--898132555
Q gi|254780709|r 273 --GGLIP-----IVVTHKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 273 --G~~ls-----~~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
-..+. .......|+.+++. |+.++.|..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L~~ 157 (163)
T cd00880 121 EEEELLELRLLILLLLLGLPVIAVSALTGEGIDELRE 157 (163)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf 9999999999998767998599997898979999999
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.41 E-value=0.0037 Score=42.45 Aligned_cols=145 Identities=19% Similarity=0.246 Sum_probs=75.6
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 11354444424789999999852267426774345124568899999753035321223586612454228999965148
Q gi|254780709|r 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 (321)
Q Consensus 115 l~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~ 194 (321)
.++|.+-|||+|-+=+|. |.++.+++-- .|.. .|+..-. ....++
T Consensus 1 aivG~pN~GKSsL~N~l~------~~~~~ivs~~----------------~gtT-------r~~~~~~------~~~~~~ 45 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT------GRRDAIVEDT----------------PGVT-------RDRIYGE------AEWGGR 45 (157)
T ss_pred CCCCCCCCCHHHHHHHHH------CCCCEEEECC----------------CCCE-------EEEEEEE------EEECCE
T ss_conf 904899988999999995------8875354079----------------9935-------6678999------999998
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH--HHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 75998654333211577899998998763022234301123102335225778--9998764358976999654578706
Q gi|254780709|r 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR--QVEMFHAVAGTTGLIMTKMDGTARG 272 (321)
Q Consensus 195 DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~--~a~~F~~~~~~~g~I~TKlD~ta~~ 272 (321)
.++++||+|=......+-.++.+ +...... ..+-+++|+||..|-...+ .++...+.-----+++.|.|.-.+-
T Consensus 46 ~~~lvDTpG~~~~~~~~~~~~~~--~~~~~i~--~ad~il~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~~~ 121 (157)
T cd01894 46 EFILIDTGGIEPDDEGISKEIRE--QAELAIE--EADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEE 121 (157)
T ss_pred EEEEEECCCCCCCCCHHHHHHHH--HHHHHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCH
T ss_conf 89998578755566067899999--9999998--6590799998999999899999999998479809999787165864
Q ss_pred HHHHHHHHHHC-CCEEEEEC--CCCCCCCC
Q ss_conf 99999999976-98899975--89813255
Q gi|254780709|r 273 GGLIPIVVTHK-IPVYFLGV--GEGINDLE 299 (321)
Q Consensus 273 G~~ls~~~~~~-~Pi~fig~--Ge~i~Dl~ 299 (321)
...... +..+ .++.+|+. |+.++.|.
T Consensus 122 ~~~~~~-~~l~~~~~i~iSA~~g~Gid~L~ 150 (157)
T cd01894 122 DEAAEF-YSLGFGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred HHHHHH-HHCCCCCEEEEEEECCCCHHHHH
T ss_conf 569999-96599975999965894999999
No 166
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.40 E-value=0.0012 Score=45.90 Aligned_cols=69 Identities=22% Similarity=0.397 Sum_probs=38.1
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
++-|||+||+|||||--+--||..+ +---.++-|-+|-- ++.-|.|.-++..+=++.|.
T Consensus 109 KsNILliGPTG~GKTlla~tLAk~l---~vPF~iaDAT~lTE------------------aGYVGeDVE~ii~~Llq~Ad 167 (411)
T PRK05342 109 KSNILLIGPTGSGKTLLAQTLARIL---NVPFAIADATTLTE------------------AGYVGEDVENILLKLLQAAD 167 (411)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEECEECC------------------CCCCCCCHHHHHHHHHHHCC
T ss_conf 4538998999977889999999986---99989986120012------------------67456079999999999828
Q ss_pred H----HCCCEEEEE
Q ss_conf 5----148759986
Q gi|254780709|r 191 A----KKVDVLIID 200 (321)
Q Consensus 191 ~----~~~DvvliD 200 (321)
. -..-+|.||
T Consensus 168 ~dve~Ae~GIV~ID 181 (411)
T PRK05342 168 YDVEKAQRGIVYID 181 (411)
T ss_pred CCHHHHHCCEEEEE
T ss_conf 88998836828885
No 167
>KOG0923 consensus
Probab=97.40 E-value=0.00076 Score=47.30 Aligned_cols=187 Identities=19% Similarity=0.236 Sum_probs=105.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHH--HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-----CCCCCC-----CCC
Q ss_conf 412311354444424789999999--85226742677434512456889999975303532-----122358-----661
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-----VCSEIG-----SDA 178 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~--~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-----~~~~~~-----~dp 178 (321)
..|+.++|-+||||||-+--.-+- |.+.|++ +.++-.-|.||.-=-.-.|+-+||.+ |....+ .-.
T Consensus 280 ~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~--IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSekTv 357 (902)
T KOG0923 280 HQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKK--IGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEKTV 357 (902)
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCE--EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEE
T ss_conf 708999757889864456289885421358946--740685068877799999998574014314448885035674122
Q ss_pred HHHHHHH------HHHHHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 2454228------999965148759986543-332115778999989987630222343011231023352257789998
Q gi|254780709|r 179 AALAYEA------FKQAQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 (321)
Q Consensus 179 ~~v~~~a------~~~a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~ 251 (321)
....-|+ +.......|.|||||-|- |.-+-.-|+.=++.|.++ .|+..+|+.+||. | |+.
T Consensus 358 lKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~-------RpdLKllIsSAT~--D----Aek 424 (902)
T KOG0923 358 LKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-------RPDLKLLISSATM--D----AEK 424 (902)
T ss_pred EEEECCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH-------CCCCEEEEECCCC--C----HHH
T ss_conf 43224306799871463422335999602432003456799987888750-------8760477322226--7----899
Q ss_pred HHHHC---CCC---------EEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC---------HHHHHHHH
Q ss_conf 76435---897---------6999654578706999999999769889997589813255577---------89999987
Q gi|254780709|r 252 FHAVA---GTT---------GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV---------AKDFSAVI 310 (321)
Q Consensus 252 F~~~~---~~~---------g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~---------~~~~~~~l 310 (321)
|+.++ |+- .+..|+--+....-+++ .+=+ =|-+-|..-||-+|- .+.+-.+.
T Consensus 425 FS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai----~tVl---qIH~tqp~GDILVFltGQeEIEt~~e~l~~~~ 497 (902)
T KOG0923 425 FSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAI----VTVL---QIHLTQPLGDILVFLTGQEEIETVKENLKERC 497 (902)
T ss_pred HHHHCCCCCEEECCCCCCCEEEECCCCCCHHHHHHHH----HHHE---EEEECCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 9876168857723686565134304588530799988----6540---46751577657999446789999999999999
Q ss_pred CCCCCCCCC
Q ss_conf 286564633
Q gi|254780709|r 311 TGCLDYGEE 319 (321)
Q Consensus 311 lG~gd~~~~ 319 (321)
-++|+.+-|
T Consensus 498 ~~LGski~e 506 (902)
T KOG0923 498 RRLGSKIRE 506 (902)
T ss_pred HHHCCCCCE
T ss_conf 985336550
No 168
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0098 Score=39.50 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=21.6
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 741231135444442478999999985
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
-.+.++|.|+.||||||+.-=||+-+.
T Consensus 37 l~haylf~G~rGvGKTt~aRi~Ak~ln 63 (816)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALN 63 (816)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 631475117898888899999999867
No 169
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.39 E-value=0.00044 Score=48.97 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=51.4
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC--C-EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--HHHHH
Q ss_conf 67412311354444424789999999852267--4-2677434512456889999975303532122358661--24542
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--K-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAY 183 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~--k-V~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp--~~v~~ 183 (321)
..|+ ++|.||.|+||||++--+|+.+--... . .-+-++|.+.-+.. ++... .-.+.++..+...+. ..+..
T Consensus 35 ~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~-~i~~~--~~~~~~~~~~~~~~~~~~d~i~ 110 (337)
T PRK12402 35 NLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKK-YLVED--PRFAHFYDDPKRKYKSVIDNFK 110 (337)
T ss_pred CCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCC-EEECC--CCHHHHHCCHHHCCCCHHHHHH
T ss_conf 9876-988892984899999999999679975678333116531135640-01016--6423442015332773789999
Q ss_pred HHHHHH-H----HHCCCEEEEECCCCCCCHHH
Q ss_conf 289999-6----51487599865433321157
Q gi|254780709|r 184 EAFKQA-Q----AKKVDVLIIDTAGRLHNNSI 210 (321)
Q Consensus 184 ~a~~~a-~----~~~~DvvliDTAGR~~~~~~ 210 (321)
+.+... . ...|-++|+|-|.++..+..
T Consensus 111 ~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq 142 (337)
T PRK12402 111 HILKEYASMRPLSADYKLILFDNAEALREDAQ 142 (337)
T ss_pred HHHHHHHCCCCCCCCEEEEEEECCCCCCHHHH
T ss_conf 99999861488778804999707131799999
No 170
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=97.39 E-value=0.0039 Score=42.30 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC----CCC-EEEEECCCCCHH-HH
Q ss_conf 999999999878520100121000136674123113544444247899999998522----674-267743451245-68
Q gi|254780709|r 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA----GLK-VMLAAGDTFRSA-AI 155 (321)
Q Consensus 82 ~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~----g~k-V~lva~DtfR~a-A~ 155 (321)
++=++.+...|..+|.| . .+|.=|++-|++|+|||.++-++...+... +.. |..+.-++-..- ..
T Consensus 23 deqI~~l~~~L~~~l~P--------G-~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y 93 (383)
T TIGR02928 23 DEQIEELAKALRPILRP--------G-SRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSY 93 (383)
T ss_pred HHHHHHHHHHHHHHHCC--------C-CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH
T ss_conf 78999999998875067--------4-89872588788898788999999999999862269971589997785468469
Q ss_pred HHHHHHHHHH-----CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCEEE--EECCCCC
Q ss_conf 8999997530-----35321223586612454228999965-1487599--8654333
Q gi|254780709|r 156 DQLKIWADRT-----SADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLI--IDTAGRL 205 (321)
Q Consensus 156 eQL~~~a~~~-----~v~~~~~~~~~dp~~v~~~a~~~a~~-~~~Dvvl--iDTAGR~ 205 (321)
.=+..+++++ +..+ |.-+-|.+=+|+.+-.... +.++.+| .|=-=++
T Consensus 94 ~~~~~L~~~ln~~~~~~~v---P~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~L 148 (383)
T TIGR02928 94 QVLVELANQLNRRGSGEEV---PTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKL 148 (383)
T ss_pred HHHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf 9999999985157788889---887787899999999998320188799986231022
No 171
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.39 E-value=0.00045 Score=48.87 Aligned_cols=144 Identities=23% Similarity=0.351 Sum_probs=97.9
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC---CHHHHH-
Q ss_conf 6674123113544444247899999998522674267743451245688999997530353212235866---124542-
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD---AAALAY- 183 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d---p~~v~~- 183 (321)
.....++=|+|-.||||||=+=|+...++++ .|+++|.+|..=-.=.+-||.+ |+|++....|.. =|..+.
T Consensus 31 ~~g~~~lNfmsspGSGKT~LiEk~~~~~~~~-~K~Avi~GD~~t~~DA~RlR~~----G~~a~~~nTGk~CHLdA~mv~G 105 (225)
T TIGR00073 31 KEGLLVLNFMSSPGSGKTTLIEKLIERLDDE-VKIAVIEGDVQTKNDADRLRKY----GVPAIQINTGKECHLDAHMVAG 105 (225)
T ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHHC----CCEEEEECCCCCCCCHHHHHHH
T ss_conf 6597899802588611589999999984578-9789997553225569999864----9868863688644401667865
Q ss_pred --HHHHHHHHHCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHHHCCCC
Q ss_conf --28999965148-7599865433321157789999899876302223430112310233522577-8999876435897
Q gi|254780709|r 184 --EAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL-RQVEMFHAVAGTT 259 (321)
Q Consensus 184 --~a~~~a~~~~~-DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~-~~a~~F~~~~~~~ 259 (321)
++++.....+. |++||-=-|= |. +..-..---+..+-|++.|=|-|-. .-=.+|..+ +
T Consensus 106 ~~~~L~~~~ld~~~DlL~IENVGN------Lv---------CP~~FdLGe~~rVvllSVTEGdDk~lKyP~~F~~A---d 167 (225)
T TIGR00073 106 AIHALKDLPLDDISDLLLIENVGN------LV---------CPADFDLGEHMRVVLLSVTEGDDKVLKYPAMFKEA---D 167 (225)
T ss_pred HHHHHHCCCCCCCCCEEEEEECCC------CE---------ECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH---H
T ss_conf 875542168887146268864476------10---------06731123563079998658999654661588744---4
Q ss_pred EEEEECCCCCCCHHH
Q ss_conf 699965457870699
Q gi|254780709|r 260 GLIMTKMDGTARGGG 274 (321)
Q Consensus 260 g~I~TKlD~ta~~G~ 274 (321)
-+++||.|=-...|+
T Consensus 168 ~~~inK~DL~~~v~~ 182 (225)
T TIGR00073 168 LILINKVDLAEAVGF 182 (225)
T ss_pred HHHHCHHHHHHHHCC
T ss_conf 562147889977073
No 172
>PRK10436 hypothetical protein; Provisional
Probab=97.38 E-value=0.00021 Score=51.20 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=50.3
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 741231135444442478999999985226742677434-5124568899999753035321223586612454228999
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D-tfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~ 188 (321)
+..+|++.||+|||||||+.-+-..+...++++.-+.=- -|+...+.|.+++. +.|..| -.++..
T Consensus 214 p~GliLvtGPTGSGKTTTLya~L~~l~~~~~~I~TiEDPVE~~l~gi~Q~~vn~-~~g~tf-------------a~~lrs 279 (461)
T PRK10436 214 PQGLVLVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHP-RAGLTF-------------QRVLRA 279 (461)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECC-CCCHHH-------------HHHHHH
T ss_conf 997799978999956999999997434677169996077435546754523132-213139-------------999999
Q ss_pred HHHHCCCEEEEECC
Q ss_conf 96514875998654
Q gi|254780709|r 189 AQAKKVDVLIIDTA 202 (321)
Q Consensus 189 a~~~~~DvvliDTA 202 (321)
+-.++-|+|+|.-.
T Consensus 280 ~LRqDPDVImvGEI 293 (461)
T PRK10436 280 LLRQDPDVIMVGEI 293 (461)
T ss_pred HHCCCCCEEEECCC
T ss_conf 87469999986577
No 173
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.38 E-value=0.00011 Score=53.10 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 2311354444424789999999852267426774345
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
|+-++|.-||||||-+-||-.+|+++|.+|+.|=-|.
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~ 40 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 40 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 7999946999999999999999998798499994577
No 174
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=97.37 E-value=0.00015 Score=52.32 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=51.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434---512456889999975303532122358661245422899
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D---tfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
.-|||+.||||||||||+ .|+.-+-+...+=++|+- =|++-.+-|.++. .++|..| | .|+.
T Consensus 245 HGIiLVTGPTGSGKtTTL--YaaL~~LN~~~~NIlTvEDPVEY~i~GIgQ~Qvn-~kIglTF------------A-~GLR 308 (495)
T TIGR02533 245 HGIILVTGPTGSGKTTTL--YAALSRLNTPERNILTVEDPVEYQIEGIGQIQVN-PKIGLTF------------A-AGLR 308 (495)
T ss_pred CCEEEECCCCCCCHHHHH--HHHHHHHCCCCCCEEEEECCEEEEECCCCEEEEC-CCCCHHH------------H-HHHH
T ss_conf 961884177898525889--9999863589971568657824762487636514-6543038------------8-8878
Q ss_pred HHHHHCCCEEEEE
Q ss_conf 9965148759986
Q gi|254780709|r 188 QAQAKKVDVLIID 200 (321)
Q Consensus 188 ~a~~~~~DvvliD 200 (321)
..-.++=|||.|=
T Consensus 309 aILRQDPDiiMvG 321 (495)
T TIGR02533 309 AILRQDPDIIMVG 321 (495)
T ss_pred HHHCCCCCEEEEE
T ss_conf 8642799889982
No 175
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=97.36 E-value=0.0099 Score=39.47 Aligned_cols=146 Identities=21% Similarity=0.290 Sum_probs=80.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
+|+++|-.-|||.|-.=+|. |++.++++ +.-|+.- |...- .+.-.
T Consensus 3 ~VaIvGrpNvGKStLfN~l~------~~~~aIv~----------------~~~G~TR-------D~~~~------~~~~~ 47 (438)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLT------GKRDAIVA----------------DTPGVTR-------DRIYG------EAEWL 47 (438)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCEEEEC----------------CCCCCCC-------CCEEE------EEEEC
T ss_conf 89998999987899999986------88618715----------------9899984-------71589------99999
Q ss_pred CCCEEEEECCCCCCCHHHHHH-HHH-HHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 487599865433321157789-999-8998763022234301123102335225--778999876435897699965457
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMA-GIG-KMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVAGTTGLIMTKMDG 268 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~-EL~-ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~~~~g~I~TKlD~ 268 (321)
++.+.||||||=...+.+.++ .+. +....++ ..|-+++|+||.+|-. -.+.++...+.-.--=+++-|+|+
T Consensus 48 ~~~~~lvDT~G~~~~~~~~~~~~i~~q~~~ai~-----~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~ 122 (438)
T PRK00093 48 GREFIVIDTGGIDPGDEDGFEKQMREQALLAIE-----EADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDG 122 (438)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH-----HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 928999989798988820799999999999998-----589999998377689878999999999739978999975566
Q ss_pred CCCHHHHHHHHHHHCCC-EEEEEC--CCCCCCCC
Q ss_conf 87069999999997698-899975--89813255
Q gi|254780709|r 269 TARGGGLIPIVVTHKIP-VYFLGV--GEGINDLE 299 (321)
Q Consensus 269 ta~~G~~ls~~~~~~~P-i~fig~--Ge~i~Dl~ 299 (321)
... -....-.|.+|.. +.+|+. |..++||.
T Consensus 123 ~~~-~~~~~ef~~LGf~~~i~iSA~h~~Gi~~L~ 155 (438)
T PRK00093 123 KKM-EADAYEFYSLGLGEPYPISAEHGRGIGDLL 155 (438)
T ss_pred CCH-HHHHHHHHHHCCCCEEEEEECCCCCHHHHH
T ss_conf 320-345999998368981888530566989999
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0071 Score=40.51 Aligned_cols=143 Identities=18% Similarity=0.266 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
Q ss_conf 98999999999878520100121000136674-12311354444424789999999852267426774345124568899
Q gi|254780709|r 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 (321)
Q Consensus 80 ~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL 158 (321)
..++.+..+.+.+...-.+ +..+++| .+++|+||+|||||-++-.||.++-.. .-.++..|- -|=-
T Consensus 495 GQd~AV~~v~~aIrraRaG------L~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DM-----SEy~ 561 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAG------LGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDM-----SEYM 561 (786)
T ss_pred CHHHHHHHHHHHHHHHHCC------CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CCCCEEECH-----HHHH
T ss_conf 7399999999999998569------99999873578866788656999999999996599--744455456-----8777
Q ss_pred H--HHHHHHCCCC-CCCC-CCCCCHHHHHHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCCC---
Q ss_conf 9--9975303532-1223-58661245422899996-5148759986543332115778999989987630--2223---
Q gi|254780709|r 159 K--IWADRTSADF-VCSE-IGSDAAALAYEAFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR--LDPH--- 228 (321)
Q Consensus 159 ~--~~a~~~~v~~-~~~~-~~~dp~~v~~~a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~--~~~~--- 228 (321)
. +.++-+|.|= |.+. .|.- +..+. .+-|-|||.|---.-|-|.- --+.+|+.. ...+
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~--------LTEaVRr~PySViLlDEIEKAHpdV~-----nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQ--------LTEAVRRKPYSVILLDEIEKAHPDVF-----NLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHHHHHHHCCCCCCCEECCCCC--------HHHHHHCCCCEEEEECHHHHCCHHHH-----HHHHHHHCCCCEECCCCC
T ss_conf 78779987279998720065540--------03766069986888412644088999-----999998467805548998
Q ss_pred --CCCEEEEECCCCCCHHHHHH
Q ss_conf --43011231023352257789
Q gi|254780709|r 229 --APHSVLQVLDATTGQNALRQ 248 (321)
Q Consensus 229 --~p~~~~lVlda~~gq~~~~~ 248 (321)
.--.+++++-++.|.+.+..
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~ 650 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILR 650 (786)
T ss_pred EEECCEEEEEEECCCCHHHHHH
T ss_conf 8843002899845026598975
No 177
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=97.35 E-value=0.0076 Score=40.28 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=50.3
Q ss_pred CCCCC-EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 66741-23113544444247899999998522674267743451245688999997530353212235866124542289
Q gi|254780709|r 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 108 ~~~p~-vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
+.+-. |++||||.|||||.=..-+|.=+-++=.|..|. =++--||+=|=. .-+-|+=|-.++ ++|
T Consensus 446 ~~~GpqIlClvGPPGVGKTSlg~SIA~ALnRkFvR~SlG-----------G~~DeAEIrGHR--RTYvGAMPGrii-Q~l 511 (941)
T TIGR00763 446 KMKGPQILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLG-----------GVRDEAEIRGHR--RTYVGAMPGRII-QGL 511 (941)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEC-----------CCEEHHHCCCCC--CCCCCCCHHHHH-HHH
T ss_conf 888876787207269542227899999968804999526-----------722031127864--320346725789-998
Q ss_pred HHHHHHCCCEEEEE
Q ss_conf 99965148759986
Q gi|254780709|r 187 KQAQAKKVDVLIID 200 (321)
Q Consensus 187 ~~a~~~~~DvvliD 200 (321)
..++-+| =|+|||
T Consensus 512 k~~~t~N-Pl~LlD 524 (941)
T TIGR00763 512 KKAKTKN-PLILLD 524 (941)
T ss_pred HHCCCCC-CEEEEE
T ss_conf 7604158-806862
No 178
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=97.35 E-value=6.9e-05 Score=54.61 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=28.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 1231135444442478999999985226742677
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lv 145 (321)
..|+++|++|||||||+.-|..++...+.++..+
T Consensus 140 ~~ilIsG~TGSGKTT~l~all~~i~~~~~riiti 173 (283)
T pfam00437 140 GNILVSGGTGSGKTTLLYALLNEINTDDERIVTI 173 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 7599988999988999999998408777627873
No 179
>PRK05480 uridine kinase; Provisional
Probab=97.35 E-value=0.00024 Score=50.82 Aligned_cols=41 Identities=27% Similarity=0.513 Sum_probs=36.1
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6674123113544444247899999998522674267743451
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dtf 150 (321)
..+|.+|.+.|+.||||||.+-+|+..|.. .+|.++++|-|
T Consensus 3 ~k~P~iIgIaG~SgSGKTT~a~~L~~~l~~--~~v~vi~~D~Y 43 (209)
T PRK05480 3 MKQPIIIGIAGGSGSGKTTVASTIYEELGD--ESIAVISQDSY 43 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCC--CCEEEEECCCC
T ss_conf 889889999899977899999999998086--87599955441
No 180
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.34 E-value=0.0002 Score=51.38 Aligned_cols=71 Identities=27% Similarity=0.428 Sum_probs=48.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
+.++-+||-.||||||-+.||...|+++|.+|+.+=-|.++ ..+ ..+|+|. .. ++
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l~~~G~~V~~iKH~~H~-------------f~~----D~~GkDS-------~r-~~ 55 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHD-------------FDI----DTPGKDS-------YR-HR 55 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-------------CCC----CCCCCHH-------HH-HH
T ss_conf 92999996799999999999999999779859899734767-------------777----7898441-------77-67
Q ss_pred HHCCCEEEEECCCCCC
Q ss_conf 5148759986543332
Q gi|254780709|r 191 AKKVDVLIIDTAGRLH 206 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~ 206 (321)
..|.+.+++=+.+|..
T Consensus 56 ~AGA~~v~v~s~~~~~ 71 (159)
T cd03116 56 EAGAEEVLVSSPRRWA 71 (159)
T ss_pred HCCCCEEEEECCCEEE
T ss_conf 5297379997567188
No 181
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.33 E-value=0.0029 Score=43.23 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=65.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
..-++|.|++|+|||--+.=+|+.+-++|++|..+++..+ +++|+.- .. .++ ..+.++ +
T Consensus 47 ~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L----~~~l~~~-~~---------~~~-----~~~~l~--~ 105 (178)
T pfam01695 47 AENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDL----VEQLKRA-RG---------DGR-----LARTLQ--R 105 (178)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHH----HHHHHHH-HH---------CCC-----HHHHHH--H
T ss_conf 8768998999987899999999999986985999961679----9999987-52---------674-----999999--9
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 5148759986543332115778999989987630222343
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p 230 (321)
...+|+++||--|..+.+..-.+. +.+++....+..|
T Consensus 106 ~~~~dlLIiDDlG~~~~s~~~~~~---lf~li~~Rye~~s 142 (178)
T pfam01695 106 LAKADLLILDDIGYLPLSQEAAHL---LFELISDRYERRS 142 (178)
T ss_pred HHCCCEEEEEHHCCCCCCHHHHHH---HHHHHHHHHCCCC
T ss_conf 625897887200165689899999---9999999975688
No 182
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.30 E-value=0.017 Score=37.79 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=82.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522--6742677434512456889999975303532122358661245422899996
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~--g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
-|.++|--++||||.+..|.+....- ..++---..|.. ..||=| |+.+... ..++ .
T Consensus 4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~---~~E~er------giTI~~~-----~~~~--------~ 61 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSN---DLERER------GITILAK-----NTAV--------T 61 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCC---HHHHHC------CCCEEEE-----EEEE--------E
T ss_conf 8999906898799999999997487630465216861475---888872------8763345-----8999--------9
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 51487599865433321157789999899876302223430112310233522-----5778999876435897699965
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEMFHAVAGTTGLIMTK 265 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~F~~~~~~~g~I~TK 265 (321)
-+++-+-+|||.|- .+.+.|+..-.++ -+-.+||+||..|- ..+..|..++ +++ =+++.|
T Consensus 62 ~~~~~~n~IDtPGH----~dF~~~~~~~~~~--------~D~ailVVdA~~Gv~~QT~~~l~~a~~~~--~~~-iv~iNK 126 (194)
T cd01891 62 YKDTKINIVDTPGH----ADFGGEVERVLSM--------VDGVLLLVDASEGPMPQTRFVLKKALELG--LKP-IVVINK 126 (194)
T ss_pred ECCEEEEEEECCCC----HHHHHHHHHHHHH--------CCEEEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEEC
T ss_conf 89988999989984----7777789877643--------44678986537897589999999998729--974-998856
Q ss_pred CCC-CCCHHHHHHHHHH-----------HCCCEEEEE--CCCCCCCCCCC
Q ss_conf 457-8706999999999-----------769889997--58981325557
Q gi|254780709|r 266 MDG-TARGGGLIPIVVT-----------HKIPVYFLG--VGEGINDLEPF 301 (321)
Q Consensus 266 lD~-ta~~G~~ls~~~~-----------~~~Pi~fig--~Ge~i~Dl~~f 301 (321)
+|- .++.=-+++-... ...||..++ .|...+++...
T Consensus 127 ~D~~~a~~~~v~~ei~~~~~~~~~~~~~~~~pii~~SA~~G~~~d~~~~~ 176 (194)
T cd01891 127 IDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDP 176 (194)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 45898889999999999998639993335885787256553357788656
No 183
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.0012 Score=45.98 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=61.1
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC----CCCCCCHHH
Q ss_conf 674123113544444247899999998522---6742677434512456889999975303532122----358661245
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA---GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS----EIGSDAAAL 181 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~---g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~v 181 (321)
.-|+.+||.||.|+|||||+-=+|+-+--. +..+-.-+|.. -+.-+...+-..++++.- ..|-|-..-
T Consensus 41 ~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~-----c~~c~~i~~~~~~dv~EiDaas~~gv~~ir~ 115 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEK-----CTNCISFNNHNHPDIIEIDAASKTSVDDIRR 115 (507)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 96634774587997889999999999679998888998888888-----7678998658999859963788888899999
Q ss_pred HHHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 422899996-5148759986543332115778999989987630222343011231023352
Q gi|254780709|r 182 AYEAFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 (321)
Q Consensus 182 ~~~a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g 242 (321)
..+.+.|+- ..+|-|.|||-+-.+.+.. .+-| -+..+..|..+.+++ |||-
T Consensus 116 l~~~~~~~p~~~~~kv~iidE~hmls~~a--~nal-------lktlEepp~~~~Fi~-atte 167 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHMLSKGA--FNAL-------LKTLEEPPPHIIFIF-ATTE 167 (507)
T ss_pred HHHHCCCCCCCCCEEEEEECCHHHCCHHH--HHHH-------HHHHHCCCCCEEEEE-ECCC
T ss_conf 98635517876743589952142248999--9999-------997427864438999-7485
No 184
>PRK04195 replication factor C large subunit; Provisional
Probab=97.29 E-value=0.0061 Score=40.95 Aligned_cols=84 Identities=25% Similarity=0.414 Sum_probs=48.0
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426-77434512456889999975303532122358661245422899996
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~-lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
..++|.||.|+||||++-=||+.+ |..|. +=|.|.-....+++.-..+...+. + +
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~---g~~viElNASD~R~~~~I~~~i~~~~~~~s-l-------------~------- 96 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTKDVIERVAGEASTSGS-L-------------F------- 96 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCCCCHHHHHHHHHHHHHCCC-C-------------C-------
T ss_conf 469988939987999999999984---998599771011478999999998760688-7-------------7-------
Q ss_pred HHCCCEEEEECCCCCCCH--HHHHHHHHHHH
Q ss_conf 514875998654333211--57789999899
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNN--SILMAGIGKMI 219 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~--~~lm~EL~ki~ 219 (321)
....-+||+|-+--+|.+ ...+.+|.++.
T Consensus 97 ~~~~KlIIlDEvD~l~~~~d~gg~~al~~~i 127 (403)
T PRK04195 97 GAKRKLILLDEVDGIHGNADRGGVRAILEII 127 (403)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 8873499963434457244479999999998
No 185
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=97.29 E-value=0.00022 Score=51.04 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=35.1
Q ss_pred CCCCEEECCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 67412311354-44442478999999985226742677434512
Q gi|254780709|r 109 HRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 109 ~~p~vil~vG~-nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
.++.||.++-- =|||||||+.-||+++..+|++|++|-+|..-
T Consensus 119 ~~~kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlIDLDPQg 162 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA 162 (405)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 99828999788877659999999999999779988999645617
No 186
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.012 Score=38.96 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=21.2
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6741231135444442478999999985
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
.-.+.++|.|+.||||||+.-=||+-+.
T Consensus 36 r~~haylf~g~rg~gktt~ari~ak~ln 63 (696)
T PRK06872 36 RLHHAYLFSGTRGVGKTSIARLFAKGLN 63 (696)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8630475117898888899999999867
No 187
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=97.29 E-value=0.0021 Score=44.26 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=51.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC----------------CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 35444442478999999985226742677434----------------51245688999997530353212235866124
Q gi|254780709|r 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD----------------TFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 (321)
Q Consensus 117 vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D----------------tfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 180 (321)
+-+-|+|||-++.-||.+++++|++|++++=- +..-..=|.| .++++.++||+.++.-
T Consensus 59 itvGGTGKTP~v~~La~~L~~~G~~~~IiSRGYg~~~~~~~~~v~~~~~~~~vGDEpl-lla~~~~~pV~V~~~R----- 132 (332)
T PRK00313 59 ITVGGTGKTPLILWLIEHCRRRGLRVGVVSRGYGARPPQLPWRVTADQDAAEAGDEPL-LIVQRTGVPLMIDPDR----- 132 (332)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHCCCCCEEECCCH-----
T ss_conf 7358877779999999999977996589864656766677355457768455585889-9985069629980769-----
Q ss_pred HHHHHHHHHHH-HCCCEEEEECC
Q ss_conf 54228999965-14875998654
Q gi|254780709|r 181 LAYEAFKQAQA-KKVDVLIIDTA 202 (321)
Q Consensus 181 v~~~a~~~a~~-~~~DvvliDTA 202 (321)
.+|++++.. ...|+||.|-+
T Consensus 133 --~~a~~~l~~~~~~dviIlDDG 153 (332)
T PRK00313 133 --PRAVQALLAAEPLDLILSDDG 153 (332)
T ss_pred --HHHHHHHHHCCCCCEEEECCC
T ss_conf --999999996499988995585
No 188
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.28 E-value=0.00027 Score=50.46 Aligned_cols=135 Identities=24% Similarity=0.274 Sum_probs=72.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEE---------ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 1231135444442478999999985226--742677---------43451245688999997530353212235866124
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLA---------AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g--~kV~lv---------a~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 180 (321)
.-.|++=.||+|||-|+.-|.++|.+.| ++|++. |.+.|..--.++.+.+.+..++.-.......+-+.
T Consensus 437 rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~~~~~~~~~~~~~~~v~~l~~~~~~~~~r 516 (1126)
T PRK11448 437 REILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKDTKIEGNQTFASIYDIKGLTDKFPEDETK 516 (1126)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCE
T ss_conf 54688724888589899999999996587672579856589999999987543454566640022001025678787771
Q ss_pred HHHHHHHHHH-------------HHCCCEEEEECCCCCCCHHHHHH-----------HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 5422899996-------------51487599865433321157789-----------99989987630222343011231
Q gi|254780709|r 181 LAYEAFKQAQ-------------AKKVDVLIIDTAGRLHNNSILMA-----------GIGKMIRVLKRLDPHAPHSVLQV 236 (321)
Q Consensus 181 v~~~a~~~a~-------------~~~~DvvliDTAGR~~~~~~lm~-----------EL~ki~~v~~~~~~~~p~~~~lV 236 (321)
|.+-+++..- -..||+||||-|-|+.+-..-|. -..++++|+..++. .++=
T Consensus 517 v~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy~ld~em~e~e~~~rd~~s~~skyr~IldYFDA-----~~iG 591 (1126)
T PRK11448 517 VHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGYTLDKEMTEGELQFRDQLDYVSKYRRVLDYFDA-----VKIG 591 (1126)
T ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHH-----HHHC
T ss_conf 99973078998752357677999985137989778788743323110001023202477789999876215-----5404
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 023352257789998764
Q gi|254780709|r 237 LDATTGQNALRQVEMFHA 254 (321)
Q Consensus 237 lda~~gq~~~~~a~~F~~ 254 (321)
|-||- +.+....|..
T Consensus 592 LTATP---~~~T~~~Fg~ 606 (1126)
T PRK11448 592 LTATP---ALHTTEIFGE 606 (1126)
T ss_pred CCCCC---CCCHHHHHCC
T ss_conf 76799---9555677099
No 189
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.27 E-value=0.0021 Score=44.14 Aligned_cols=100 Identities=20% Similarity=0.298 Sum_probs=71.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHCCC-CCCCC----CCCCCCCCCEEECCCCC
Q ss_conf 9999997388989999999999987512789---9899999999987852010-01210----00136674123113544
Q gi|254780709|r 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV---SVQRVLYDVSELIHKMLMP-LSKPF----NWDFSHRPHVILVVGVN 120 (321)
Q Consensus 49 Lee~LL~ADVg~~va~~Iie~ik~~~~~~~i---~~~~i~~~l~~~L~~~L~~-~~~~~----~~~~~~~p~vil~vG~n 120 (321)
|-..|..+.+.++.+-.|...+.+....++. +.+++...+...|.+.-.+ ..... .+....+|.+|++=|..
T Consensus 192 LarSltaaG~~P~~Ay~iA~eie~~L~~~~~~~i~~~elr~~v~~~L~~~~~~~~A~rY~lwR~ir~~~~PiiILIGGaS 271 (492)
T PRK12337 192 LVQSLLAAGVAPDVARKVARVTQRDLRGSGDRVVRRDEIREKVEALLRDEVGPDVSARYRLLRVLRKPPRPLHVLLGGVS 271 (492)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 99999980588889999999999999865887970999999999999873038899999999997356887699960788
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 44424789999999852267426774345124
Q gi|254780709|r 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 (321)
Q Consensus 121 G~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~ 152 (321)
|+||+|-.+-||+++-=. -++++|+-|-
T Consensus 272 GvGKSTlAseLA~RLGI~----~VIsTDsIRE 299 (492)
T PRK12337 272 GTGKSVLAAELAYRLGIT----RVVPTDAIRE 299 (492)
T ss_pred CCCHHHHHHHHHHHHCCC----CCCCCHHHHH
T ss_conf 866888999999960988----1025447999
No 190
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.27 E-value=0.0097 Score=39.53 Aligned_cols=175 Identities=22% Similarity=0.285 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999987852010012100013667412311354444424789999999852267426774345124568899999753
Q gi|254780709|r 85 LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 (321)
Q Consensus 85 ~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~ 164 (321)
+..|.+.+.+.|...... ......+--|.++|=+-|||.|-+-.| ..+.+. + -++.
T Consensus 148 i~~L~~~i~~~l~~~~~~--~~~~~~~iriaivGrPNvGKSTl~N~l----l~~~r~--i----------------vs~~ 203 (429)
T TIGR03594 148 IGDLLDAILELLPEEEEE--EEEEDGPIKIAIIGRPNVGKSTLVNAL----LGEERV--I----------------VSDI 203 (429)
T ss_pred HHHHHHHHHHHCCCCCCC--CCCCCCCEEEEEECCCCCCHHHHHHHH----HHHHHH--H----------------CCCC
T ss_conf 999999999658866555--434556526999748876546777776----543332--1----------------4799
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 0353212235866124542289999651487599865433---3211577899998998763022234301123102335
Q gi|254780709|r 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR---LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 (321)
Q Consensus 165 ~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR---~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~ 241 (321)
-|. -.|+..+.+ ..++..+.+|||||= .+.+ +-++.+ .+.+.++... ..+-++||+||+-
T Consensus 204 ~Gt-------TrD~i~~~~------~~~~~~~~~iDTaGirkk~k~~-~~~e~~-s~~~t~~~i~--~~dvvil~iD~~~ 266 (429)
T TIGR03594 204 AGT-------TRDSIDIPF------ERNGKKYLLIDTAGIRRKGKVT-EGIEKY-SVLRTLKAIE--RADVVLLVLDATE 266 (429)
T ss_pred CCC-------CCCCEEEEE------EECCEEEEEEECCCCCCCCCCC-HHHHHH-HHHHHHHHHH--HCCEEEEEEECCC
T ss_conf 986-------310268799------9999089999898876366423-047799-9999999987--4477999997665
Q ss_pred CHHHH--HHHHHHHHHCCCCEEEEECCCCCCCHHHHHH--------HHHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf 22577--8999876435897699965457870699999--------99997698899975--898132555
Q gi|254780709|r 242 GQNAL--RQVEMFHAVAGTTGLIMTKMDGTARGGGLIP--------IVVTHKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 242 gq~~~--~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls--------~~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
|-..- ..+..-.+.----=+++-|.|--...-..-. .......||.|++. |+++++|-.
T Consensus 267 ~~~~qD~~i~~~i~~~~k~~ii~~NK~Dli~~~~~~~~~~~~i~~~l~~~~~~pI~fiSA~~g~gi~kl~~ 337 (429)
T TIGR03594 267 GITEQDLRIAGLALEAGKALIIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 88488899999898739976999972230379999999999999856236898689973457789999999
No 191
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0021 Score=44.18 Aligned_cols=80 Identities=30% Similarity=0.395 Sum_probs=46.0
Q ss_pred CCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH------HCCCC-CCCC-CCCCC
Q ss_conf 6674-12311354444424789999999852267426774345124568899999753------03532-1223-58661
Q gi|254780709|r 108 SHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR------TSADF-VCSE-IGSDA 178 (321)
Q Consensus 108 ~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~------~~v~~-~~~~-~~~dp 178 (321)
+++| ..+||+||+|||||-++-.||..+.. . ++..| .-.|.+. +|.|= |.+. .|.
T Consensus 484 ~~rPigsFlf~GPTGVGKTElak~LA~~L~~---~--lir~D---------MSEy~e~hsvsrLiGaPPGYVGy~eGG-- 547 (758)
T PRK11034 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGI---E--LLRFD---------MSEYMERHTVSRLIGAPPGYVGFDQGG-- 547 (758)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---H--HHCCC---------HHHHCCHHHHHHHCCCCCCCCCCCCCC--
T ss_conf 9997058999789987779999999999866---7--72142---------665312014777448998666767777--
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 245422899996514875998654333211
Q gi|254780709|r 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 (321)
Q Consensus 179 ~~v~~~a~~~a~~~~~DvvliDTAGR~~~~ 208 (321)
...+++ +.+-|-|||.|---.-|-+
T Consensus 548 --~Lte~V---r~~PysVvL~DEIEKAhpd 572 (758)
T PRK11034 548 --LLTDAV---IKHPHAVLLLDEIEKAHPD 572 (758)
T ss_pred --CCCHHH---HHCCCEEEEEHHHHHHCHH
T ss_conf --012878---7398779973367563989
No 192
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0017 Score=44.76 Aligned_cols=132 Identities=18% Similarity=0.169 Sum_probs=64.9
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCCHHHHHHHHHHHHHHCCCCCC---CCCCCC---
Q ss_conf 667412311354444424789999999852267----4267743451245688999997530353212---235866---
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC---SEIGSD--- 177 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~----kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~---~~~~~d--- 177 (321)
..-|+.+||.||.|+||||++-.+|.++-.++. ...+...|..-+- ..|+..- ..-++-.+. .....+
T Consensus 42 gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~-~r~i~~g-~hpdl~~i~r~~d~k~~~~~~ 119 (352)
T PRK09112 42 GRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPL-WRQIAQG-AHPNLLHLTRPFDEKTGKFKT 119 (352)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHCC-CCCCEEEEECCCCHHHHHHHC
T ss_conf 99652465358998089999999999986699866686556788878778-9999748-999956553432202145433
Q ss_pred --CHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf --1245422899996----514875998654333211577899998998763022234301123102335225778999
Q gi|254780709|r 178 --AAALAYEAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 (321)
Q Consensus 178 --p~~v~~~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~ 250 (321)
++.-+++-.+++. ..+|-|+|||-|-+|..+.. +-|-|+ .+..|..+++++=++.-+.....++
T Consensus 120 ~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aa--NALLK~-------LEEPp~~~~fiLit~~~~~ll~TI~ 189 (352)
T PRK09112 120 AITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAA--NAILKT-------LEEPPARALFILISHSSGRLLPTIR 189 (352)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHH--HHHHHH-------HHCCCCCEEEEEEECCHHHCHHHHH
T ss_conf 577799999999845488668806999818787469999--999998-------5348987489988699777768999
No 193
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.26 E-value=0.00031 Score=49.99 Aligned_cols=45 Identities=31% Similarity=0.525 Sum_probs=41.2
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 674123113544444247899999998522674267743451245
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~a 153 (321)
+++.||-|.|+.||||||-+-+|..++...|.++.++-+|.+|.+
T Consensus 2 ~kg~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR~~ 46 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDIVRTN 46 (175)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 988899988989999999999999999986996799776888875
No 194
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=97.26 E-value=0.00025 Score=50.74 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=35.5
Q ss_pred CCCCCEEECCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 667412311354-4444247899999998522674267743451
Q gi|254780709|r 108 SHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 (321)
Q Consensus 108 ~~~p~vil~vG~-nG~GKTTT~aKLA~~~~~~g~kV~lva~Dtf 150 (321)
..++.||.+.-- =|||||||+.-||+++..+|+||++|-+|..
T Consensus 101 g~~~~VIav~N~KGGVGKTTtav~LA~~LA~~G~RVLvIDLDPQ 144 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTSAHLAQYLALRGYRVLAIDLDPQ 144 (387)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 99880899978887656999999999999977998899953701
No 195
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.02 Score=37.31 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=22.4
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 741231135444442478999999985
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
-.+.++|.|+.|+||||+.-=||+.+.
T Consensus 37 l~haylf~G~rGvGKTt~Ari~Ak~lN 63 (704)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILAKSLN 63 (704)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 752375027898788899999999967
No 196
>KOG2878 consensus
Probab=97.24 E-value=0.0014 Score=45.44 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=62.8
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC--C-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCHH
Q ss_conf 136674123113544444247899999998522--6-74267743451245688999997530353212--235866124
Q gi|254780709|r 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA--G-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--SEIGSDAAA 180 (321)
Q Consensus 106 ~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~--g-~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~--~~~~~dp~~ 180 (321)
...+-|.+|-|.||+|+||||+..-|-+.+.++ + ++++-++.|-|---+-+|++.--.--+-++.. +-.|+.-..
T Consensus 26 ~G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~k 105 (282)
T KOG2878 26 DGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLK 105 (282)
T ss_pred CCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCEEEECHHHHHHHHHCCCCHHHCCCCCCCCCCHH
T ss_conf 78867679993378888830431456789999853644148997210366025578887509998021147888852089
Q ss_pred HHHHHHHHHH
Q ss_conf 5422899996
Q gi|254780709|r 181 LAYEAFKQAQ 190 (321)
Q Consensus 181 v~~~a~~~a~ 190 (321)
...+.+...-
T Consensus 106 ll~evLna~~ 115 (282)
T KOG2878 106 LLVEVLNALS 115 (282)
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 197
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.0021 Score=44.23 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=64.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCCEEECCCCCC
Q ss_conf 9999997388989999999999987512789---9899999999987852010012100----01366741231135444
Q gi|254780709|r 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV---SVQRVLYDVSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNG 121 (321)
Q Consensus 49 Lee~LL~ADVg~~va~~Iie~ik~~~~~~~i---~~~~i~~~l~~~L~~~L~~~~~~~~----~~~~~~p~vil~vG~nG 121 (321)
|-..|..+.|.++.+-.|.-.+.++...+++ +.+++.+..+..+.+.-....+... +.....|.+|++=|+.|
T Consensus 20 L~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~~~v~~~eir~~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGGasG 99 (299)
T COG2074 20 LARSLTAAGVDPDLAYSIAIEIQEELKKEGIRLVTKDEIREVYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIGGASG 99 (299)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 98888861468258999999999999757972761999999999998732879999999999986157875999617887
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 442478999999985226742677434512
Q gi|254780709|r 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 122 ~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
|||||-++-+|+++-= + -++.+|.-|
T Consensus 100 VGkStIA~ElA~rLgI---~-~visTD~IR 125 (299)
T COG2074 100 VGKSTIAGELARRLGI---R-SVISTDSIR 125 (299)
T ss_pred CCHHHHHHHHHHHCCC---C-EEECCHHHH
T ss_conf 7725799999997298---6-100424799
No 198
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.24 E-value=0.0013 Score=45.65 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=64.0
Q ss_pred CCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCC-CCCCCHHHHH
Q ss_conf 36674-1231135444442478999999985226742677434512456889999975303532-1223-5866124542
Q gi|254780709|r 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSE-IGSDAAALAY 183 (321)
Q Consensus 107 ~~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~-~~~dp~~v~~ 183 (321)
.+++| .++||+||+|||||-++--||.++-..... |+..|- .-+-.=-..+.-+|.|= |.+. .|. ...
T Consensus 593 dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~--liriDM---SEy~E~hsVSrLiGaPPGYVGy~eGG----~LT 663 (857)
T PRK10865 593 DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDA--MVRIDM---SEFMEKHSVSRLVGAPPGYVGYEEGG----YLT 663 (857)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHH--EEEECC---HHHCCCHHHHHHCCCCCCCCCCCCCC----CHH
T ss_conf 999973899986898788899999999998389334--256253---32113012767558998766757788----110
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCHHHHHH
Q ss_conf 28999965148759986543332115-77899998998763022-2343011231023352257789
Q gi|254780709|r 184 EAFKQAQAKKVDVLIIDTAGRLHNNS-ILMAGIGKMIRVLKRLD-PHAPHSVLQVLDATTGQNALRQ 248 (321)
Q Consensus 184 ~a~~~a~~~~~DvvliDTAGR~~~~~-~lm~EL~ki~~v~~~~~-~~~p~~~~lVlda~~gq~~~~~ 248 (321)
+++ +.+-|-|||.|---.-|-+. |++-++-.=-+.-.... ...---++.++-++.|.+.+..
T Consensus 664 eaV---Rr~PySVvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtIIImTSN~Gs~~i~~ 727 (857)
T PRK10865 664 EAV---RRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE 727 (857)
T ss_pred HHH---HHCCCEEEEEHHHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCCHHHHHHHH
T ss_conf 999---8198778863257663858999999870368320799988851334899646233699986
No 199
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.23 E-value=0.0024 Score=43.85 Aligned_cols=93 Identities=16% Similarity=0.245 Sum_probs=58.3
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 74123113544444247899999998522674267743451245688999997530353212235866124542289999
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
...-++|.|+.|+|||.-++=+|+.+..+|++|+.++.--+ ++.|+. .|.....+ .. +-+.
T Consensus 95 ~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dL----l~~lr~--------t~~~~~~~-e~----~~l~-- 155 (242)
T PRK07952 95 NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI----MSAMKD--------TFRNSETS-EE----QLLN-- 155 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH----HHHHHH--------HHHCCCCC-HH----HHHH--
T ss_conf 88717997899997899999999999987994999779999----999999--------98068756-99----9999--
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 65148759986543332115778999989987630
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~ 224 (321)
...++|+++||--|--+..+. +...+..+++.
T Consensus 156 ~l~~~dLLIiDdlG~e~~t~~---~~~~lf~iId~ 187 (242)
T PRK07952 156 DLSNVDLLVIDEIGVQTESRY---EKVIINQIVDR 187 (242)
T ss_pred HHHCCCEEEEECCCCCCCCHH---HHHHHHHHHHH
T ss_conf 863189898730146658888---99999999999
No 200
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=97.23 E-value=0.0019 Score=44.57 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=21.6
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 741231135444442478999999985
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
-.+-+||.|+.||||||+.-=||+-+.
T Consensus 37 ~~~a~l~~g~rg~gkt~~ar~~ak~ln 63 (705)
T PRK05648 37 LHHAYLFTGTRGVGKTTIARIIAKCLN 63 (705)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 630465007898889899999999867
No 201
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.23 E-value=0.0041 Score=42.17 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=56.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
.-++|.|++|+|||--+.=+|+.+..+|++|+..++.-+ ++.|+.+- +. ..+.. .+.++. .
T Consensus 184 ~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L----~~~l~~~~-------~~-~~~~~-----~~~~~~--l 244 (330)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDEL----IENLREIR-------FN-NDNDA-----PELEDL--L 244 (330)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH----HHHHHHHH-------CC-CCCCH-----HHHHHH--H
T ss_conf 866988999998899999999999987994999629999----99999975-------45-76448-----999999--9
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 148759986543332115778999
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGI 215 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL 215 (321)
.++|++|||--|--+...--.++|
T Consensus 245 ~~~DLLIIDDLG~E~~t~~~~~~L 268 (330)
T PRK06835 245 INCDLLIIDDLGTESITEFSKTEL 268 (330)
T ss_pred HHCCEEEEECCCCCCCCHHHHHHH
T ss_conf 618989972103455886899999
No 202
>PRK08233 hypothetical protein; Provisional
Probab=97.22 E-value=0.002 Score=44.39 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=51.9
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 674123113544444247899999998522674267743451-2456889999975303532122358661245422899
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dtf-R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
++|.||.+.|.+||||||-+-+|.+.+.. .+ +..-|.| +.-+-+++..|-+.-. .+ .. -|--. ..+.+.
T Consensus 1 kkp~IIgIaGgSgSGKTtla~~l~~~l~~---~~-~~~~D~y~~~~~~~~~~~~~~~~~-~~--d~--~d~~~-l~~~l~ 70 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHKLKN---SK-ALYFDRYDFDNCPEDICKWIDDGA-NY--SE--WVLTP-LIKDIQ 70 (182)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCC---CE-EEEECCCCCCCCHHHHHHHHCCCC-CC--CH--HHHHH-HHHHHH
T ss_conf 99889999688867899999999997467---75-899666555468788998740677-86--66--66999-999999
Q ss_pred HHHH-HCCCEEEEECC
Q ss_conf 9965-14875998654
Q gi|254780709|r 188 QAQA-KKVDVLIIDTA 202 (321)
Q Consensus 188 ~a~~-~~~DvvliDTA 202 (321)
..+. +.+|+|++|-.
T Consensus 71 ~l~~~~~~d~iIvEgi 86 (182)
T PRK08233 71 ELIAKSNVDYIIVDYP 86 (182)
T ss_pred HHHCCCCCCEEEEEEE
T ss_conf 9855998728999644
No 203
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0074 Score=40.37 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=21.7
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6741231135444442478999999985
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
.-|+.+||.||.|+|||||+-=+|+-+-
T Consensus 36 ~i~hayLf~GprG~GKTs~Ari~akaln 63 (541)
T PRK05563 36 RIAHAYLFCGTRGTGKTSTAKIFAKAVN 63 (541)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9320453038799589999999999957
No 204
>PRK00454 engB GTPase EngB; Reviewed
Probab=97.21 E-value=0.025 Score=36.70 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=78.5
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 013667412311354444424789999999852267-4267743451245688999997530353212235866124542
Q gi|254780709|r 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 (321)
Q Consensus 105 ~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~-kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~ 183 (321)
++..+.|. |.++|-.-|||+|-+=.|. |. ++++++ ++ ||-. + .+.++.
T Consensus 19 ~p~~~~p~-VaivGrpNvGKSTL~N~L~------g~k~~a~vs-~~--pgtT-r--------~i~~~~------------ 67 (196)
T PRK00454 19 LPPDDGPE-IAFAGRSNVGKSSLINALT------NRKNLARTS-KT--PGRT-Q--------LINFFE------------ 67 (196)
T ss_pred CCCCCCCE-EEEECCCCCCHHHHHHHHH------CCCCEEEEE-CC--CCCE-E--------EEEEEE------------
T ss_conf 99988968-9998489888999999986------897369974-78--8860-7--------988876------------
Q ss_pred HHHHHHHHHCCCEEEEECCC-----CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-----HHHHHHHHH
Q ss_conf 28999965148759986543-----33211577899998998763022234301123102335225-----778999876
Q gi|254780709|r 184 EAFKQAQAKKVDVLIIDTAG-----RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN-----ALRQVEMFH 253 (321)
Q Consensus 184 ~a~~~a~~~~~DvvliDTAG-----R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~-----~~~~a~~F~ 253 (321)
.+..+++|||+| +.+.....+.++ +...+... ..-.-+++++||..|-. .+++++.+.
T Consensus 68 --------~~~~~~lvDtpGyG~a~~~~~~~~~~~~~--i~~yl~~~--~~l~~villIDa~~g~~~~D~~i~~~l~~~~ 135 (196)
T PRK00454 68 --------VNDGLRLVDLPGYGYAKVSKEEKEKWQKL--IEEYLQKR--ENLKGVVLLIDSRHPLKELDLEMIEWLKEAG 135 (196)
T ss_pred --------CCCCEEEEECCCCCCCCCCHHHHHHHHHH--HHHHHHHH--HCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf --------18833899379974132778788899999--99999962--3336389999716589888999999998627
Q ss_pred HHCCCCEEEEECCCCCCCHHH---HHHHHHHH-----CCCEEEEEC--CCCCCCCCCCC
Q ss_conf 435897699965457870699---99999997-----698899975--89813255577
Q gi|254780709|r 254 AVAGTTGLIMTKMDGTARGGG---LIPIVVTH-----KIPVYFLGV--GEGINDLEPFV 302 (321)
Q Consensus 254 ~~~~~~g~I~TKlD~ta~~G~---~ls~~~~~-----~~Pi~fig~--Ge~i~Dl~~f~ 302 (321)
.| .=++++|.|--.+... ...+.... ..||.+++. |+++++|...-
T Consensus 136 --~p-~iivlNKiD~l~~~~~~~~~~~i~~~l~~~~~~~~ii~ISA~~g~GI~eL~~~I 191 (196)
T PRK00454 136 --IP-VLIVLTKADKLKKGERKKLLKKVKKALARFAADPEVLLFSSLKKTGIDELRAAI 191 (196)
T ss_pred --CC-CEEEEECCHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf --78-599998725169789999999999997612589828999699997989999999
No 205
>KOG0925 consensus
Probab=97.20 E-value=0.0017 Score=44.88 Aligned_cols=177 Identities=25% Similarity=0.237 Sum_probs=106.6
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC-----C--CCCCCCHHHH--
Q ss_conf 123113544444247899999998522674267743451245688999997530353212-----2--3586612454--
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-----S--EIGSDAAALA-- 182 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~-----~--~~~~dp~~v~-- 182 (321)
.+|.+||-+|+||||-+--.+..+...-. -+++++-..|.||+.--+-.|+.++|.+=. . +.-+-|-.+.
T Consensus 63 Q~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky 141 (699)
T KOG0925 63 QIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKY 141 (699)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHC-CCEEECCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHH
T ss_conf 26999934888864547499999987633-66132471578899999988887443102011532121236871589999
Q ss_pred -------HHHHHHHHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf -------228999965148759986543-332115778999989987630222343011231023352257789998764
Q gi|254780709|r 183 -------YEAFKQAQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 (321)
Q Consensus 183 -------~~a~~~a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~ 254 (321)
++|+..--...|.+||.|-|- |+---.-||.=|+.+.+ ..|+..+.|++|+. ++-.--.-|.+
T Consensus 142 ~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~-------~rpdLk~vvmSatl--~a~Kfq~yf~n 212 (699)
T KOG0925 142 CTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVR-------NRPDLKLVVMSATL--DAEKFQRYFGN 212 (699)
T ss_pred HCCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHH-------HCCCCEEEEEECCC--CHHHHHHHCCC
T ss_conf 5332899987508554530079953166666789999999999986-------19881699940601--25999987079
Q ss_pred HCCC---C-----EEEEECCCCCCCHHHHHHHHHH------HCCCEEEEECCCCCCCCC
Q ss_conf 3589---7-----6999654578706999999999------769889997589813255
Q gi|254780709|r 255 VAGT---T-----GLIMTKMDGTARGGGLIPIVVT------HKIPVYFLGVGEGINDLE 299 (321)
Q Consensus 255 ~~~~---~-----g~I~TKlD~ta~~G~~ls~~~~------~~~Pi~fig~Ge~i~Dl~ 299 (321)
. |+ - -++.|---+-.+.-+|+-.+.+ -|-=+.|++.-|.|+|-.
T Consensus 213 ~-Pll~Vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC 270 (699)
T KOG0925 213 A-PLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDAC 270 (699)
T ss_pred C-CEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf 9-756458988457883588873689999999999984168887899946778999999
No 206
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=97.20 E-value=0.00049 Score=48.66 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=36.7
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCC
Q ss_conf 667412311354444424789999999852267--4267743451
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTF 150 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~--kV~lva~Dtf 150 (321)
++++.+|.+.|+.||||||.+.+|+..+.+.+. .|.+++.|-|
T Consensus 31 ~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGF 75 (230)
T PRK09270 31 PQRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGF 75 (230)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 997189999899988999999999999862379985799736533
No 207
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=97.20 E-value=0.0095 Score=39.61 Aligned_cols=152 Identities=22% Similarity=0.256 Sum_probs=88.2
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 36674123113544444247899999998522674267743451245688999997530353212235866124542289
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
+.++.-+|.+||-.-|||.|-.-+|. |++.++|. +.-|+.- |...
T Consensus 34 ~~~~lPiVaIvGRPNVGKStLFNrL~------~~~~AIV~----------------d~pGvTR-------Dr~~------ 78 (474)
T PRK03003 34 ASGPLPVVAVVGRPNVGKSTLVNRIL------GRREAVVE----------------DIPGVTR-------DRVS------ 78 (474)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH------CCCEEEEC----------------CCCCCCC-------CCEE------
T ss_conf 67999989998999988899999986------88638805----------------9899880-------8636------
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHCCCCCCCCEEEEECCCCCCHHHH--HHHHHHHHHCCCCEEEE
Q ss_conf 99965148759986543332115778999989-9876302223430112310233522577--89998764358976999
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQVLDATTGQNAL--RQVEMFHAVAGTTGLIM 263 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki-~~v~~~~~~~~p~~~~lVlda~~gq~~~--~~a~~F~~~~~~~g~I~ 263 (321)
..+.-.+..+.+|||+|=......+...+..- ..+++ ..+-++||+|+..|-... +.|+...+.-.--=+++
T Consensus 79 ~~~~~~~~~f~lvDTgG~~~~~~~~~~~i~~q~~~ai~-----eaD~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVv 153 (474)
T PRK03003 79 YDAEWNGRRFVVQDTGGWEPDAKGLQALVAEQAEVAMR-----TADAVLFVVDATVGATATDEAVARLLRRSGKPVFLAA 153 (474)
T ss_pred EEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-----HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89999992899997999999747899999999999998-----6999999996898988789999999875399779986
Q ss_pred ECCCCCCCHHHHHHHHHHHCC-CEEEEEC--CCCCCCCC
Q ss_conf 654578706999999999769-8899975--89813255
Q gi|254780709|r 264 TKMDGTARGGGLIPIVVTHKI-PVYFLGV--GEGINDLE 299 (321)
Q Consensus 264 TKlD~ta~~G~~ls~~~~~~~-Pi~fig~--Ge~i~Dl~ 299 (321)
.|.|+.. .-...+-.|.+|. .+.+|+. |..++||.
T Consensus 154 NK~D~~~-~~~~~~efy~LGf~~~i~ISA~Hg~Gi~dLl 191 (474)
T PRK03003 154 NKVDSER-GEADAAALWSLGLGEPHPVSALHGRGVADLL 191 (474)
T ss_pred ECCCCCC-HHHHHHHHHHHCCCCEEEEEHHCCCCHHHHH
T ss_conf 7556621-0234899997579986996020378979999
No 208
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=97.19 E-value=0.016 Score=38.07 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=72.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 44444247899999998522674267743451245688999997530353212235866124542289999651487599
Q gi|254780709|r 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 (321)
Q Consensus 119 ~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~Dvvl 198 (321)
=+|+|||...|-|+..++++|++|.-. .|- +-||+++
T Consensus 7 dT~VGKT~vt~~l~~~l~~~G~~v~~~-----KPv--------------------------------------~t~D~vl 43 (134)
T cd03109 7 GTDIGKTVATAILARALKEKGYRVAPL-----KPV--------------------------------------QTYDFVL 43 (134)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEE-----CHH--------------------------------------HCCCEEE
T ss_conf 888768999999999999779917787-----566--------------------------------------7279899
Q ss_pred EECCCCC--CCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH--HHHHHHH-HHHHHCCCCEEEEECCCCCCCH
Q ss_conf 8654333--211-57789999899876302223430112310233522--5778999-8764358976999654578706
Q gi|254780709|r 199 IDTAGRL--HNN-SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ--NALRQVE-MFHAVAGTTGLIMTKMDGTARG 272 (321)
Q Consensus 199 iDTAGR~--~~~-~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq--~~~~~a~-~F~~~~~~~g~I~TKlD~ta~~ 272 (321)
|--||=. +.+ ..+|..| .+.++ .-++||.++-.|- .++-.++ .-+.-+++-|+|+...+...-.
T Consensus 44 VEGaGG~~vPl~~~~~~~Dl---~~~l~-------~pvIlV~~~~LG~INhtlLt~eal~~~gi~v~G~i~N~~~~~~~~ 113 (134)
T cd03109 44 VEGAGGLCVPLKEDFTNADV---AKELN-------LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGL 113 (134)
T ss_pred EECCCCEEECCCCCCCHHHH---HHHHC-------CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
T ss_conf 98897746003898629999---99709-------998999778878589999999999987992889999467997106
Q ss_pred --HHHHHHHHHHCCCEE
Q ss_conf --999999999769889
Q gi|254780709|r 273 --GGLIPIVVTHKIPVY 287 (321)
Q Consensus 273 --G~~ls~~~~~~~Pi~ 287 (321)
=.+-.+...++.|+.
T Consensus 114 ~~~N~~~I~~~t~vPvL 130 (134)
T cd03109 114 ATLNVETIERLTGIPVL 130 (134)
T ss_pred HHHHHHHHHHHHCCCEE
T ss_conf 78759999997499977
No 209
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.19 E-value=0.008 Score=40.11 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=73.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|.++|.+.+||+|-+-.|.. .+++..++ + .|..+- ++. .|. -+
T Consensus 2 IaivG~pN~GKSTL~N~L~~-----~~~~~~vs-~------------------~~gtTr----~i~--~~~-------~~ 44 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN-----RKKLARTS-K------------------TPGKTQ----LIN--FFN-------VN 44 (170)
T ss_pred EEEECCCCCCHHHHHHHHHC-----CCCEEEEE-C------------------CCCEEE----EEE--EEE-------EC
T ss_conf 89998999999999999968-----99627860-7------------------897785----205--885-------38
Q ss_pred CCEEEEECCCC--CCCHHHHHHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 87599865433--32115778999-98998763022234301123102335225--77899987643-589769996545
Q gi|254780709|r 194 VDVLIIDTAGR--LHNNSILMAGI-GKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAV-AGTTGLIMTKMD 267 (321)
Q Consensus 194 ~DvvliDTAGR--~~~~~~lm~EL-~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~-~~~~g~I~TKlD 267 (321)
..+++|||+|- ........... ..+.+.+.... .-+.+++|+||+.|-. -.+.++...+. .| -=++++|.|
T Consensus 45 ~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~~~~--~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp-~iiVlNKiD 121 (170)
T cd01876 45 DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE--NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKAD 121 (170)
T ss_pred CEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEEEE
T ss_conf 779999657840101687799999999999998406--33499999963223748689999999876998-799998675
Q ss_pred CCCCHHH--HH-HHHHH-----HCCCEEEEEC--CCCCCCCCCC
Q ss_conf 7870699--99-99999-----7698899975--8981325557
Q gi|254780709|r 268 GTARGGG--LI-PIVVT-----HKIPVYFLGV--GEGINDLEPF 301 (321)
Q Consensus 268 ~ta~~G~--~l-s~~~~-----~~~Pi~fig~--Ge~i~Dl~~f 301 (321)
--.+... .+ .+... ...||.+++. |+.+++|...
T Consensus 122 lv~~~~~~~~~~~~~~~l~~~~~~~~ii~iSA~~g~gi~~L~~~ 165 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRAL 165 (170)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 37877899999999998742179983999988999779999999
No 210
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.19 E-value=0.0037 Score=42.51 Aligned_cols=88 Identities=25% Similarity=0.415 Sum_probs=65.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532--1223586612454228999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF--VCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~--~~~~~~~dp~~v~~~a~~~ 188 (321)
-.++|+-|-.|.||+|-+-.+|..+.++|.+|+-+++- -..+|++.-|+|+++.- +.--.+.|-. +-++.
T Consensus 82 GSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGE----ES~~QIk~RA~RLg~~~~~l~l~set~le----~Il~~ 153 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE----ESPEQIKLRADRLGISTENLYLLAETNLE----DILAS 153 (372)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECH----HHHHHHHHHHHHHCCCCCCCEEEECCCHH----HHHHH
T ss_conf 71799825998868899999999998639938998245----67899998999858788772788435699----99999
Q ss_pred HHHHCCCEEEEECCCCCC
Q ss_conf 965148759986543332
Q gi|254780709|r 189 AQAKKVDVLIIDTAGRLH 206 (321)
Q Consensus 189 a~~~~~DvvliDTAGR~~ 206 (321)
....+.|+++||.-=-++
T Consensus 154 i~~~kP~~lIIDSIQT~~ 171 (372)
T cd01121 154 IEELKPDLVIIDSIQTVY 171 (372)
T ss_pred HHHHCCCEEEEECHHHCC
T ss_conf 997199889995622020
No 211
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.003 Score=43.09 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=22.2
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6741231135444442478999999985
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
.-++-+||.|+.|+||||+.-=||+-+.
T Consensus 36 ~~~~a~lf~g~rg~gkt~~ar~~a~~ln 63 (663)
T PRK08770 36 RVHHAFLFTGTRGVGKTTIARIFAKSLN 63 (663)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9740476227998888899999999867
No 212
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.18 E-value=0.00034 Score=49.77 Aligned_cols=40 Identities=35% Similarity=0.590 Sum_probs=37.2
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 2311354444424789999999852267426774345124
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~ 152 (321)
||-|.|+.||||||-+-+|..++.++|.++.++-+|.+|.
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~iR~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 9898799999999999999999998699759977488997
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0035 Score=42.61 Aligned_cols=114 Identities=23% Similarity=0.285 Sum_probs=68.8
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCC---------------------CCEEEEECCCCCHH--HHHHHHHHHHHH
Q ss_conf 6741231135444442478999999985226---------------------74267743451245--688999997530
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG---------------------LKVMLAAGDTFRSA--AIDQLKIWADRT 165 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g---------------------~kV~lva~DtfR~a--A~eQL~~~a~~~ 165 (321)
..|+.+||.||.|+||||++-=||+.+.-.+ ..+..+.+..-|.. -+||.+...+..
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~ 101 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFL 101 (325)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf 88761003799999789999999999658664334552002244432025688659977321333300699999999860
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 35321223586612454228999965148759986543332115778999989987630222343011231023352257
Q gi|254780709|r 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 (321)
Q Consensus 166 ~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~ 245 (321)
...-. ..++-+|+||-|-+++.+.. +.|.+ ..+..|..+.+++-+.--...
T Consensus 102 ~~~~~--------------------~~~~kviiidead~mt~~A~--nallk-------~lEep~~~~~~il~~n~~~~i 152 (325)
T COG0470 102 SESPL--------------------EGGYKVVIIDEADKLTEDAA--NALLK-------TLEEPPKNTRFILITNDPSKI 152 (325)
T ss_pred CCCCC--------------------CCCCEEEEEECCCCCCHHHH--HHHHH-------HCCCCCCCEEEEEEECCHHHC
T ss_conf 44656--------------------67726999732032698888--76754-------332488871699974985556
Q ss_pred HHHHHH
Q ss_conf 789998
Q gi|254780709|r 246 LRQVEM 251 (321)
Q Consensus 246 ~~~a~~ 251 (321)
+...+.
T Consensus 153 l~tI~S 158 (325)
T COG0470 153 LPTIRS 158 (325)
T ss_pred HHHHHH
T ss_conf 478775
No 214
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.023 Score=36.86 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=22.4
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6741231135444442478999999985
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
.-.+-+||.|+.|+||||+.-=||+-+.
T Consensus 36 r~~haylf~G~rGvGKTt~ari~Ak~ln 63 (721)
T PRK12323 36 RLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (721)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9754475027998889899999999976
No 215
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=97.18 E-value=0.0034 Score=42.74 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---------------CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 35444442478999999985226742677434---------------512456889999975303532122358661245
Q gi|254780709|r 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---------------TFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 (321)
Q Consensus 117 vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D---------------tfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v 181 (321)
+-+-|+|||-.+-.||.+++.+|++|++++=- +.+-.+=|.+. ++...++|++.++.-
T Consensus 43 it~GGtGKTP~v~~l~~~l~~~g~~~~ilSRGYg~~~~~~~~v~~~~~~~~~GDEp~l-la~~~~~~v~V~~~R------ 115 (318)
T pfam02606 43 ITVGGTGKTPLVIALAELLRARGLRPGVLSRGYGGKSKGPVLVDPGSSAAEVGDEPLL-LARRTPVPVVVGPDR------ 115 (318)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCHHHCCCHHHH-HHHHCCCCEEECCCH------
T ss_conf 8458878589999999999976994478326767657887897168894673969999-987569859980528------
Q ss_pred HHHHHHHHH-HHCCCEEEEECC
Q ss_conf 422899996-514875998654
Q gi|254780709|r 182 AYEAFKQAQ-AKKVDVLIIDTA 202 (321)
Q Consensus 182 ~~~a~~~a~-~~~~DvvliDTA 202 (321)
.+|++++. ..++|+||.|-+
T Consensus 116 -~~a~~~l~~~~~~dviIlDDG 136 (318)
T pfam02606 116 -AAAARALLEAHGADVIILDDG 136 (318)
T ss_pred -HHHHHHHHHHCCCCEEEECCC
T ss_conf -999999998489979991486
No 216
>PRK13695 putative NTPase; Provisional
Probab=97.16 E-value=0.00067 Score=47.67 Aligned_cols=101 Identities=25% Similarity=0.341 Sum_probs=61.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCCCC-----------------
Q ss_conf 41231135444442478999999985226742-677434512456889999975303532122-----------------
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADRTSADFVCS----------------- 172 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV-~lva~DtfR~aA~eQL~~~a~~~~v~~~~~----------------- 172 (321)
+--|++.|+.|+||||-+-|+...++..|.+| ++.+-. .+..++|.|-.++.-
T Consensus 3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T~E---------vre~G~R~GF~vv~l~~g~~~~lA~~~~~~~~ 73 (174)
T PRK13695 3 ALRIGITGMPGVGKTTLVLKIAELLAREGYKVGGFITEE---------VREGGKRIGFKIIDLDTGEEGILARVGAVSRP 73 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEE---------EECCCEEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 429998789998899999999999863696174699525---------60388285059999058856876753788985
Q ss_pred ---CCCCCCH---HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ---3586612---45422899996514875998654333211577899998998763
Q gi|254780709|r 173 ---EIGSDAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 (321)
Q Consensus 173 ---~~~~dp~---~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~ 223 (321)
.++-|.. .++-.++..|. ...|+++||--|+|........+ .+.++++
T Consensus 74 ~VgkY~V~~~~~e~~~~~~l~~a~-~~~dlivIDEIG~MEl~s~~F~~--~V~~~L~ 127 (174)
T PRK13695 74 RVGKYVVNLEDLERIAIPAISRAL-READLIIIDEIGPMELKSKKFVS--AVEEVLK 127 (174)
T ss_pred CCCCEEEEHHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHHH--HHHHHHC
T ss_conf 545668716897899899998353-57879999631033110499999--9999973
No 217
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.16 E-value=0.004 Score=42.25 Aligned_cols=143 Identities=17% Similarity=0.256 Sum_probs=76.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHHHH
Q ss_conf 311354444424789999999852267426774345124568899999753035321223586612-4542289999651
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAK 192 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~-~v~~~a~~~a~~~ 192 (321)
|.++|.+-|||+|-+-.|. |.++.+. |. |+ -+ .+|. .+. . ...
T Consensus 3 VAiiG~pNvGKSTLlN~l~------~~~~~V~--~~--pg----------------TT----~~~~~g~i----~--~~~ 46 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAIS------NAKPKIA--DY--PF----------------TT----LVPNLGVV----R--VDD 46 (170)
T ss_pred EEEECCCCCCHHHHHHHHH------CCCCEEE--CC--CC----------------CC----CCCEEEEE----E--ECC
T ss_conf 8998999998999999996------7876032--56--66----------------52----37447799----9--369
Q ss_pred CCCEEEEECCCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---------CCE
Q ss_conf 487599865433---32115778999989987630222343011231023352257789998764358---------976
Q gi|254780709|r 193 KVDVLIIDTAGR---LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG---------TTG 260 (321)
Q Consensus 193 ~~DvvliDTAGR---~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~---------~~g 260 (321)
+..++++||+|= .|.+.++..+. .+.+. ..+-+++|+|++...+..++.+...+.+. -.=
T Consensus 47 ~~~i~~~DtpGi~~~~~~~~~l~~~~---l~~i~-----~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~i 118 (170)
T cd01898 47 GRSFVVADIPGLIEGASEGKGLGHRF---LRHIE-----RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRI 118 (170)
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHH---HHCCC-----CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCE
T ss_conf 85699964886444554662248999---86133-----45617999989987898999999999999827444038650
Q ss_pred EEEECCCCCCCH--HHHHHH--HHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf 999654578706--999999--9997698899975--898132555
Q gi|254780709|r 261 LIMTKMDGTARG--GGLIPI--VVTHKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 261 ~I~TKlD~ta~~--G~~ls~--~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
++++|.|--.+- -..+.- ....+.|+.|++. |++++.|..
T Consensus 119 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 164 (170)
T cd01898 119 VVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLR 164 (170)
T ss_pred EEEEHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf 6776202428356389999999856999589997547979999999
No 218
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.16 E-value=0.0034 Score=42.69 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=23.7
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 674123113544444247899999998522
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~ 138 (321)
.-|+ ++|.||.|+||||++--||+.+-..
T Consensus 36 ~~ph-lLf~GppG~GKTt~a~~la~~l~~~ 64 (318)
T PRK00440 36 NMPH-LLFAGPPGTGKTTAALALARELYGE 64 (318)
T ss_pred CCCE-EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9866-9888959988999999999997698
No 219
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.15 E-value=0.00046 Score=48.82 Aligned_cols=36 Identities=31% Similarity=0.557 Sum_probs=32.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 23113544444247899999998522674267743451
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dtf 150 (321)
+|.+.|+.||||||.+-+|+..+. +.+|.++++|-|
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~--~~~v~~i~~D~y 36 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG--NPKVVIISQDSY 36 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEECCCC
T ss_conf 989889998859999999999809--998589978888
No 220
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=97.15 E-value=0.0074 Score=40.38 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH-
Q ss_conf 8898999999999998751278998999999999878520100121000136674123113544444247899999998-
Q gi|254780709|r 57 DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM- 135 (321)
Q Consensus 57 DVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~- 135 (321)
|+|..++.++.++ +..-..++.. ...|-.+|+.. ++ .-.|.=++|+.|+|||+-|=-||--.
T Consensus 6 ~~~f~t~~~~~~~---r~~~~~isTg------~~~LD~lLgGG-----i~---~g~ITEi~G~~gsGKTQlc~qlav~~q 68 (261)
T pfam08423 6 PMGFTTATELHQR---RSEVIRITTG------SKELDKLLGGG-----IE---TGSITEVFGEFRTGKTQLCHTLCVTCQ 68 (261)
T ss_pred CCCCCCHHHHHHH---HCCCCEECCC------CHHHHHHHCCC-----CC---CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 5787439999997---5487357789------87899873798-----66---772999989988878999999999940
Q ss_pred -----HHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf -----5226742677434-51245688999997530353---------21223586612454228999965148759986
Q gi|254780709|r 136 -----SDAGLKVMLAAGD-TFRSAAIDQLKIWADRTSAD---------FVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 (321)
Q Consensus 136 -----~~~g~kV~lva~D-tfR~aA~eQL~~~a~~~~v~---------~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliD 200 (321)
...+.+|+.|.+. +|++-=+.|+ +++.+.+ ++......+-..+..........+++.+|+||
T Consensus 69 lp~~~gg~~g~vvyIDTEg~f~~eRl~qi---a~~~~~~~~~~L~~I~v~r~~~~~~~~~~l~~~~~~~~~~~v~LvVvD 145 (261)
T pfam08423 69 LPLEMGGGEGKALYIDTEGTFRPERIVAI---AERFGLDPEEVLDNIAYARAYNTEHQMQLLLQAAAMMSESRFALLIVD 145 (261)
T ss_pred CHHHHCCCCCEEEEEECCCCCCHHHHHHH---HHHHCCCHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 70965699972899936888698999999---998299978987533141689989999999999998731783499983
Q ss_pred CCC
Q ss_conf 543
Q gi|254780709|r 201 TAG 203 (321)
Q Consensus 201 TAG 203 (321)
..-
T Consensus 146 Sia 148 (261)
T pfam08423 146 SAT 148 (261)
T ss_pred CCC
T ss_conf 240
No 221
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=97.14 E-value=0.0036 Score=42.54 Aligned_cols=78 Identities=27% Similarity=0.306 Sum_probs=53.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC----------------CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 354444424789999999852267426774345----------------1245688999997530353212235866124
Q gi|254780709|r 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT----------------FRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 (321)
Q Consensus 117 vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt----------------fR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 180 (321)
+-+-|+|||-++-=||.+++.+|.+|++++=-= .+-.+=|-+. ++.+-++|++.+..-
T Consensus 57 itvGGtGKTP~v~~la~~l~~~g~~~~IlSRGYg~~~~~~~~v~~~~~~~~~vGDEpll-la~~~~~~v~V~~~R----- 130 (334)
T PRK00652 57 LTVGGNGKTPVVIWLAEQLQARGVKVGVVSRGYGGKSKGYPLVLPADTTAAEVGDEPVL-IAQRTGAPVAVSPDR----- 130 (334)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCHHHCCCHHHH-HHHCCCCCEEEECCH-----
T ss_conf 88788777999999999999769936787346676567872761799983551868999-851789839995668-----
Q ss_pred HHHHHHHHHHHHCCCEEEEECC
Q ss_conf 5422899996514875998654
Q gi|254780709|r 181 LAYEAFKQAQAKKVDVLIIDTA 202 (321)
Q Consensus 181 v~~~a~~~a~~~~~DvvliDTA 202 (321)
.+|++++...++|+||.|-+
T Consensus 131 --~~~~~~l~~~~~dviIlDDG 150 (334)
T PRK00652 131 --VKAIKALLALGADIIILDDG 150 (334)
T ss_pred --HHHHHHHHHCCCCEEEECCC
T ss_conf --99999999659999997476
No 222
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.13 E-value=0.00045 Score=48.91 Aligned_cols=132 Identities=18% Similarity=0.317 Sum_probs=70.3
Q ss_pred CCCCCHHHCCHHHHHHHHHHH------HHHHHHHHHH--H-HHCCCCCCH---HHHHHHHHH--HH-----HC-------
Q ss_conf 100593541489999999999------9999999999--8-605677899---999999999--99-----73-------
Q gi|254780709|r 3 NQKVASESLSWIRKLTKGFAS------TSLKLKEGIT--D-IISSRRLDD---GVREELEDL--LI-----RS------- 56 (321)
Q Consensus 3 ~~~~~~e~m~~f~kLk~gL~k------t~~~L~~~l~--~-l~~~~~lde---~~leeLee~--LL-----~A------- 56 (321)
+||..+|-..+++-||...++ +...|..+.. . -+..|-|-| +++||.=-+ |- .+
T Consensus 371 ~EPs~eet~~ILkGLk~~YE~fH~V~Y~~eal~~Av~LS~ryI~DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eadekG 450 (774)
T TIGR02639 371 GEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADEKG 450 (774)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCC
T ss_conf 95788899999986554201325011386999999999888602578985432288999999997120277643201125
Q ss_pred -------CCCHHHHHHHHHHHHHHHHCCC--CCH-HHHHHHHHHHHHHHCCCCCCCC------------CCCCCCCCC-E
Q ss_conf -------8898999999999998751278--998-9999999998785201001210------------001366741-2
Q gi|254780709|r 57 -------DIGVAVAQKIVEELLTKRYAKD--VSV-QRVLYDVSELIHKMLMPLSKPF------------NWDFSHRPH-V 113 (321)
Q Consensus 57 -------DVg~~va~~Iie~ik~~~~~~~--i~~-~~i~~~l~~~L~~~L~~~~~~~------------~~~~~~~p~-v 113 (321)
.|++.=+++++.++-. .-.+. .+. .+-++.|.+.|.+..-+....+ -+..+++|. .
T Consensus 451 leetalPev~~~diE~vvak~a~-iP~~~~s~ddD~~~L~~L~~~L~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GS 529 (774)
T TIGR02639 451 LEETALPEVNVKDIEEVVAKMAK-IPVKTVSSDDDREKLKNLEKELKAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGS 529 (774)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHC-CCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 30004787854449999988718-99415426447988720447630131515899999999999987424778881688
Q ss_pred EECCCCCCCCHHHHHHHHHHHH
Q ss_conf 3113544444247899999998
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKM 135 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~ 135 (321)
++|+||||||||=-+=.||..|
T Consensus 530 FLF~GPTGVGKTElak~LA~~L 551 (774)
T TIGR02639 530 FLFVGPTGVGKTELAKQLAEEL 551 (774)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8864798962578899999970
No 223
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.13 E-value=0.00056 Score=48.22 Aligned_cols=147 Identities=14% Similarity=0.205 Sum_probs=77.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
-..|++.||+|||||||+.-+-.++...+++|.-+.-- +|..--+..++.|. ...+.+ ...++..+.
T Consensus 80 ~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~tiEdP------vE~~~~~~~Q~~v~---~~~g~~----~~~~lr~~L 146 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDP------VEYQIPGINQVQVN---EKAGLT----FARGLRAIL 146 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECC------CCCCCCCCCEEEEC---CCCCCC----HHHHHHHHH
T ss_conf 98899978999977999999998643688508998676------31456887357616---666878----999999985
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 51487599865433321157789999899876302223430112310233522577899987643589769996545787
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta 270 (321)
.++-|+|+|+-.- |.+-... ++.... .-|.++-++.| +++......+.+ .+++-..++
T Consensus 147 R~dPDvi~igEiR----D~eta~~------a~~aa~--tGhlV~tTlHa---~~a~~~i~RL~~-lgv~~~~l~------ 204 (264)
T cd01129 147 RQDPDIIMVGEIR----DAETAEI------AVQAAL--TGHLVLSTLHT---NDAPGAITRLLD-MGIESYLLS------ 204 (264)
T ss_pred CCCCCEEEECCCC----CHHHHHH------HHHHHH--HCCEEEEEECC---CCHHHHHHHHHH-CCCCHHHHH------
T ss_conf 5699988746889----9999999------999997--09969999703---999999999998-299989999------
Q ss_pred CHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 069999999997698899975898
Q gi|254780709|r 271 RGGGLIPIVVTHKIPVYFLGVGEG 294 (321)
Q Consensus 271 ~~G~~ls~~~~~~~Pi~fig~Ge~ 294 (321)
-.+..++++-=+|..+-..-+.
T Consensus 205 --~~l~~vi~QRLvr~LCp~Ck~~ 226 (264)
T cd01129 205 --SALIGVIAQRLVRKLCPHCKEK 226 (264)
T ss_pred --HHHHHHHHHHHHHHCCHHHCCC
T ss_conf --9999999864232218745897
No 224
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.0035 Score=42.63 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=59.2
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHC---CC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCHH
Q ss_conf 674123113544444247899999998522---67-4267743451245688999997530353212----235866124
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA---GL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVC----SEIGSDAAA 180 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~---g~-kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~----~~~~~dp~~ 180 (321)
.-++-+||.|+.|||||||+-=||.-+--. |. .+-.-.|.. -+.-+.-.+-..++|+. +..|-|-..
T Consensus 43 ~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~-----c~~c~~i~~~~~~d~~e~daas~~~v~~~r 117 (600)
T PRK09111 43 RIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGV-----GEHCQAIMEGRHVDVIEMDAASHTGVDDIR 117 (600)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf 842047645789878999999999996698876668998898998-----865898866899875885155457888999
Q ss_pred HHHHHHHHHHH-HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 54228999965-148759986543332115778999989987630222343011231023352
Q gi|254780709|r 181 LAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 (321)
Q Consensus 181 v~~~a~~~a~~-~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g 242 (321)
-..+.+.|+-. ..|-|.|||-.-.+.+.. . +.+=|..+..|.++.+.+ |||-
T Consensus 118 ~~~~~~~~~p~~~~~kv~iidevhmls~~a--f-------nallktleepp~~~~fi~-att~ 170 (600)
T PRK09111 118 EIIESVRYRPVSARYKVYIIDEVHMLSTAA--F-------NALLKTLEEPPPHVKFIF-ATTE 170 (600)
T ss_pred HHHHHHCCCCCCCCEEEEEEECCCCCCHHH--H-------HHHHHHHHCCCCCEEEEE-ECCC
T ss_conf 999860538877754699960011057999--9-------999987625986549999-6285
No 225
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.02 Score=37.40 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=22.2
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 741231135444442478999999985
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
-.+.++|.|+.|+||||++-=+|+-+.
T Consensus 37 l~haylf~G~rGvGKTt~ARi~Ak~lN 63 (717)
T PRK08853 37 LHHAYLFSGTRGVGKTTIGRLFAKGLN 63 (717)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 740576108898889899999999867
No 226
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.032 Score=35.87 Aligned_cols=197 Identities=21% Similarity=0.249 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHH--HHHHHHHHH---HCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-HHHH----
Q ss_conf 999999999999--999999986---056778999999999999973889899999999999875127899-8999----
Q gi|254780709|r 15 RKLTKGFASTSL--KLKEGITDI---ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRV---- 84 (321)
Q Consensus 15 ~kLk~gL~kt~~--~L~~~l~~l---~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~-~~~i---- 84 (321)
+|.++.++|+.. -|.++++.+ ++...-+++-.+++++.+=++++.-++-+++.+.+.+-..-..-+ ...+
T Consensus 216 ~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evkek~~~El~kL~~m~~~SaE~~ViRnY 295 (782)
T COG0466 216 KKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNY 295 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999877888999999999999998588865455899999997516999899999999999985079999168899899
Q ss_pred --------------------------------HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHH
Q ss_conf --------------------------------999999878520100121000136674123113544444247899999
Q gi|254780709|r 85 --------------------------------LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 (321)
Q Consensus 85 --------------------------------~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA 132 (321)
+..+++-|.+.|.-.. ...+.+-.++++|||.|||||.-.--+|
T Consensus 296 lDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~----l~~~~kGpILcLVGPPGVGKTSLgkSIA 371 (782)
T COG0466 296 LDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQK----LTKKLKGPILCLVGPPGVGKTSLGKSIA 371 (782)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH----HHCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 999982887655421322999998744355671168999999999998----6146788579997899887011899999
Q ss_pred HHHHHCCCCEEEEEC----------CCC---CHHH-HHHHHHHHHHHC------CCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 998522674267743----------451---2456-889999975303------53212235866124542289999651
Q gi|254780709|r 133 KKMSDAGLKVMLAAG----------DTF---RSAA-IDQLKIWADRTS------ADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 133 ~~~~~~g~kV~lva~----------Dtf---R~aA-~eQL~~~a~~~~------v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
.-+.++=-+..|... -|| =||- ++.++.-+...- |+=.++.+..||+|..-+-++--+++
T Consensus 372 ~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~ 451 (782)
T COG0466 372 KALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNN 451 (782)
T ss_pred HHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCC
T ss_conf 99589779995476542777535531233568728999999867768747864033316777788688888626976567
Q ss_pred ---------C---CCEEEEECCCCCC-CHHHHHHHH
Q ss_conf ---------4---8759986543332-115778999
Q gi|254780709|r 193 ---------K---VDVLIIDTAGRLH-NNSILMAGI 215 (321)
Q Consensus 193 ---------~---~DvvliDTAGR~~-~~~~lm~EL 215 (321)
. .+|.+|-||-.+. .-..|++-|
T Consensus 452 ~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM 487 (782)
T COG0466 452 TFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM 487 (782)
T ss_pred CHHHCCCCCCCCHHHEEEEEECCCCCCCCHHHHCCE
T ss_conf 612220167664432588860375132986784303
No 227
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.11 E-value=0.0015 Score=45.28 Aligned_cols=139 Identities=17% Similarity=0.279 Sum_probs=67.8
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 311354444424789999999852-2674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~-~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
|+++|+.||||||-+-++...+.. .+... +++ .--+|..+. . ...+
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~-----~~~-----------~~Tvg~~~~---------~--------i~~~ 48 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPP-----SKI-----------TPTVGLNIG---------T--------IEVG 48 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCC-----CCC-----------CCCCCEEEE---------E--------EEEC
T ss_conf 999999998888999988750367677765-----540-----------353132689---------9--------9989
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHHHC---CCCE----EEEE
Q ss_conf 48759986543332115778999989987630222343011231023352257789-99876435---8976----9996
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVA---GTTG----LIMT 264 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~-a~~F~~~~---~~~g----~I~T 264 (321)
++.+.+.||||. +.+.+|- +.+.. ..+-.++|+|++-- +.++. ...|.+.+ ...+ ++..
T Consensus 49 ~~~l~iwD~~Gq-----e~~~~l~------~~y~~-~a~~ii~VvD~sd~-~~~~~~~~~l~~~~~~~~~~~~pili~~N 115 (167)
T cd04160 49 NARLKFWDLGGQ-----ESLRSLW------DKYYA-ECHAIIYVIDSTDR-ERFEESKSALEKVLRNEALEGVPLLILAN 115 (167)
T ss_pred CEEEEEEECCCC-----HHHHHHH------HHHCC-CCCEEEEEEECCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 999999968987-----8887899------87428-98789999866867-88999999999975110248962999970
Q ss_pred CCCCCCC-H----HHHHHHHHH--HCCCEEEEE----CCCCCCCC
Q ss_conf 5457870-6----999999999--769889997----58981325
Q gi|254780709|r 265 KMDGTAR-G----GGLIPIVVT--HKIPVYFLG----VGEGINDL 298 (321)
Q Consensus 265 KlD~ta~-~----G~~ls~~~~--~~~Pi~fig----~Ge~i~Dl 298 (321)
|.|-... . -..+..... ...++.|+. +|+.|++.
T Consensus 116 K~Dl~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~SAktG~Gv~e~ 160 (167)
T cd04160 116 KQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
T ss_conf 667665778999999999999985469989999887829498999
No 228
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.11 E-value=0.0025 Score=43.72 Aligned_cols=47 Identities=30% Similarity=0.322 Sum_probs=40.5
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCH
Q ss_conf 136674123113544444247899999998522674--26774345124
Q gi|254780709|r 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK--VMLAAGDTFRS 152 (321)
Q Consensus 106 ~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~k--V~lva~DtfR~ 152 (321)
.....|.||.+.|+-||||.||+..|++.+.+.+.+ |-++++|-|--
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy 125 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHY 125 (283)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 6888887999605766557789999999996388987337871454546
No 229
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.0034 Score=42.76 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=63.4
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE--ECC-CCCH----HHHHHHHHHHHHHCCCCCCCCC---CC-
Q ss_conf 66741231135444442478999999985226742677--434-5124----5688999997530353212235---86-
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA--AGD-TFRS----AAIDQLKIWADRTSADFVCSEI---GS- 176 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lv--a~D-tfR~----aA~eQL~~~a~~~~v~~~~~~~---~~- 176 (321)
..-|+.++|.||.|+||||++-.+|.++...+..-... +|. ..-. -..-|...- ..-++-++.... +.
T Consensus 36 grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~-~hpdl~~i~r~~d~k~~~ 114 (363)
T PRK07471 36 GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAG-AHGGLLTLERSWNEKGKR 114 (363)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCC-CCCCEEEEECCCCCCCCC
T ss_conf 9976458767999818899999999998579997777767870531258777289999526-999846676200113332
Q ss_pred ----CCHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf ----61245422899996----5148759986543332115778999989987630222343011231023352257789
Q gi|254780709|r 177 ----DAAALAYEAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 (321)
Q Consensus 177 ----dp~~v~~~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~ 248 (321)
-++.-+.+-...+. ..++-|+|||-|-+|..+. -+-|-| ..+..|..+++++=++.-......
T Consensus 115 ~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~a--aNALLK-------~LEEPP~~t~fiLit~~~~~llpT 185 (363)
T PRK07471 115 LRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANA--ANALLK-------VLEEPPARSLLLLVSHAPARLLPT 185 (363)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHH--HHHHHH-------HHCCCCCCEEEEEEECCHHHCHHH
T ss_conf 12445399999999997248524896699986878738899--999999-------721589883899863997777799
Q ss_pred HHH
Q ss_conf 998
Q gi|254780709|r 249 VEM 251 (321)
Q Consensus 249 a~~ 251 (321)
+..
T Consensus 186 I~S 188 (363)
T PRK07471 186 IRS 188 (363)
T ss_pred HHH
T ss_conf 997
No 230
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.10 E-value=0.0029 Score=43.21 Aligned_cols=92 Identities=22% Similarity=0.334 Sum_probs=64.4
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHHH
Q ss_conf 1231135444442478999999985226742677434512456889999975303532---1223586612454228999
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF---VCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~---~~~~~~~dp~~v~~~a~~~ 188 (321)
+++-+.|+.++||||.+..+.+..++.|..|+.+-+- .|++ ..|++.+||+. +..++ |-+.-+++.++.
T Consensus 56 Rivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE----~a~d--~~~a~~lGVD~~~l~~~qp--~~~Eq~l~i~~~ 127 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE----HALD--PVYAKKLGVDLDNLLISQP--DTGEQALEIADS 127 (325)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HCCC--HHHHHHCCCCHHHEEEECC--CHHHHHHHHHHH
T ss_conf 0899988987779999999999987359839999625----4259--8999980998467589666--389999999999
Q ss_pred HH-HHCCCEEEEECCCCCCCHHHH
Q ss_conf 96-514875998654333211577
Q gi|254780709|r 189 AQ-AKKVDVLIIDTAGRLHNNSIL 211 (321)
Q Consensus 189 a~-~~~~DvvliDTAGR~~~~~~l 211 (321)
.. ....|+|++|.-|-+....++
T Consensus 128 li~s~~~dliViDSvaal~p~~E~ 151 (325)
T cd00983 128 LVRSGAVDLIVVDSVAALVPKAEI 151 (325)
T ss_pred HHCCCCCCEEEECCCCCCCCHHHH
T ss_conf 751588767998151123657887
No 231
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.027 Score=36.42 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=22.5
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 741231135444442478999999985
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
-.+.++|.|+.|+||||+.-=+|+.+.
T Consensus 37 ~~haylf~G~rG~GKtt~ari~ak~ln 63 (643)
T PRK07994 37 IHHAYLFSGTRGVGKTSIARLLAKGLN 63 (643)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 663487458998888899999999967
No 232
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.08 E-value=0.0018 Score=44.63 Aligned_cols=142 Identities=20% Similarity=0.194 Sum_probs=79.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|.++|..|+||||.+=.|-++-..- -|.|.++.=.+..+-+..+.-. + .+| .-++-.+.-++
T Consensus 2 i~iigH~~aGKTtL~E~lL~~~g~i-----------~~~G~V~~g~t~~D~~~~E~~R---g---iSi-~s~~~~~~w~~ 63 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGAI-----------DRLGSVEDGTTVSDYDPEEIKR---K---MSI-STSVAPLEWKG 63 (268)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCC-----------CCCCCCCCCCCCCCCCHHHHHC---C---CCE-ECCEEEEEECC
T ss_conf 8999089999899999999966996-----------6576545897357787889867---9---675-13557888899
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-----HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 875998654333211577899998998763022234301123102335225-----778999876435897699965457
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN-----ALRQVEMFHAVAGTTGLIMTKMDG 268 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~-----~~~~a~~F~~~~~~~g~I~TKlD~ 268 (321)
+-+=||||.|- . +-..|...-.++ -+-.++|+||..|-. ..++++.++ +| .=+.++|||-
T Consensus 64 ~~inliDTPG~--~--DF~~e~~~aL~v--------~D~Av~Vida~~GVe~~T~~~w~~~~~~~--iP-~i~fINKmDr 128 (268)
T cd04170 64 HKINLIDTPGY--A--DFVGETRAALRA--------ADAALVVVSAQSGVEVGTEKLWEFADEAG--IP-RIIFINKMDR 128 (268)
T ss_pred EEEEEEECCCC--H--HHHHHHHHHHCC--------CCEEEEEECCCCCHHHHHHHHHHHHHHCC--CC-EEEEEECCCC
T ss_conf 79999869897--5--799999998404--------78399994187547687999999999859--99-8999978787
Q ss_pred -CCCHHH-HHHHHHHHCCCEEE
Q ss_conf -870699-99999997698899
Q gi|254780709|r 269 -TARGGG-LIPIVVTHKIPVYF 288 (321)
Q Consensus 269 -ta~~G~-~ls~~~~~~~Pi~f 288 (321)
.+..-. +-++...++.++.-
T Consensus 129 ~~ad~~~~l~~i~~~lg~~~vp 150 (268)
T cd04170 129 ERADFDKTLAALQEAFGRPVVP 150 (268)
T ss_pred CCCCHHHHHHHHHHHHCCCEEE
T ss_conf 8996477999999986898499
No 233
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.08 E-value=0.0032 Score=42.96 Aligned_cols=147 Identities=22% Similarity=0.262 Sum_probs=76.6
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
.|.++|.+-|||+|-+=+|.. .++ .+ . +.-|+.. |+.... ....
T Consensus 1 tVaIvG~PNvGKSTLlN~L~g------~~~-~V-s---------------~~pGtTr-------d~~~~~------~~~~ 44 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALTG------ARQ-HV-G---------------NWPGVTV-------EKKEGT------FKYK 44 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHC------CCC-EE-E---------------CCCCCCC-------CEEEEE------EEEC
T ss_conf 989988999899999999959------996-56-3---------------8999723-------335768------7525
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCC
Q ss_conf 48759986543332115778999989987630222343011231023352257789998764-35897699965457870
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTAR 271 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~-~~~~~g~I~TKlD~ta~ 271 (321)
+..++++||+|=......-.+| ++.+- ......++-+++|+||+.-...........+ ..| .=++++|.|.-.+
T Consensus 45 ~~~~~lvDTpGi~~~~~~~~~e--~v~~~--~~~~~~aDlvl~vvDa~~~er~l~l~~~l~~~~~p-~IvVlNK~Dl~~~ 119 (188)
T pfam02421 45 GYEIEIVDLPGTYSLSPYSEEE--KVARD--YLLEEKPDVIINVVDATNLERNLYLTLQLLELGIP-VVVALNMMDEAEK 119 (188)
T ss_pred CEEEEEEECCCCCCCCCCCHHH--HHHHH--HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCHHCCC
T ss_conf 1679999688850146532789--99999--98623687369997676245448999999976998-8999617020100
Q ss_pred HHHH---HHHHHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf 6999---9999997698899975--898132555
Q gi|254780709|r 272 GGGL---IPIVVTHKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 272 ~G~~---ls~~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
-... -......+.|+.+|+. |+.+++|..
T Consensus 120 ~~~~~~~~~l~~~lg~~vi~ISA~~g~Gi~eL~~ 153 (188)
T pfam02421 120 KGIKIDIKKLSELLGVPVVPTSARKGEGIDELKD 153 (188)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
T ss_conf 3652039999987399689999316999999999
No 234
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.00086 Score=46.91 Aligned_cols=118 Identities=22% Similarity=0.211 Sum_probs=58.8
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHH
Q ss_conf 6741231135444442478999999985226742677434512456889999975303532122----358661245422
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS----EIGSDAAALAYE 184 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~v~~~ 184 (321)
.-|+.++|.||.|+||||++-=||+.+--.+...-.-.|..-+. =+...+-...+++.. ..|-|-..-..+
T Consensus 37 ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~-----C~~I~~g~~~DViEiDaAs~~gVddIRel~e 111 (462)
T PRK06305 37 RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAI-----CKEISSGTSLDVIEIDGASHRGIEDIRQINE 111 (462)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHH-----HHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 97623430389985999999999999679999888898876688-----8998638999868643553446689999997
Q ss_pred HHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 899996-514875998654333211577899998998763022234301123102335
Q gi|254780709|r 185 AFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 (321)
Q Consensus 185 a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~ 241 (321)
.+.++- ..+|-|.|||-+-+|++..- +-|-| ..+..|..+.+++ +||
T Consensus 112 ~v~~~P~~~~yKVyIIDEvhmLs~~Af--NALLK-------tLEEPP~~v~FIL-aTT 159 (462)
T PRK06305 112 TVLFTPSKSQYKIYIIDEVHMLTKEAF--NSLLK-------TLEEPPQHVKFFL-ATT 159 (462)
T ss_pred HHCCCCCCCCEEEEEEECHHHCCHHHH--HHHHH-------HHHCCCCCEEEEE-EEC
T ss_conf 710088677505999815211799999--99999-------8618987749999-818
No 235
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.08 E-value=0.00091 Score=46.74 Aligned_cols=72 Identities=22% Similarity=0.304 Sum_probs=46.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCCH---HHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235-86612---454228999
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAA---ALAYEAFKQ 188 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~-~~dp~---~v~~~a~~~ 188 (321)
+|.+.||+||||||-+-+||..|..+- |++= .+|..|+.+|.++.-+++ +++|- .|=+...+.
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Lsl~~-----iSaG--------~iRelA~~~Gldl~E~~~aee~~eIDk~iD~~~~E~ 68 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKL-----ISAG--------DIRELAEKMGLDLAESKYAEENPEIDKKIDRRIREI 68 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCE-----ECCC--------HHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 788735896864789999998639831-----2020--------078898642988777344305863116753788554
Q ss_pred HHHHCCCEEE
Q ss_conf 9651487599
Q gi|254780709|r 189 AQAKKVDVLI 198 (321)
Q Consensus 189 a~~~~~Dvvl 198 (321)
|..+ -||||
T Consensus 69 A~~~-~nvvl 77 (173)
T TIGR02173 69 AEKE-KNVVL 77 (173)
T ss_pred HCCC-CCEEE
T ss_conf 3048-96688
No 236
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.08 E-value=0.0029 Score=43.22 Aligned_cols=102 Identities=25% Similarity=0.289 Sum_probs=56.1
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 74123113544444247899999998522674267743451245688999997530353212235866124542289999
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
+-.++.++|+||+||||++-=|+-.++-..-+|.+-.-|.......+ +.+.++.++..-.+..--. =++..|
T Consensus 25 ~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i~i~G~~i~~~~~~~-----~~~~gi~~v~qLSgG~~Qr---v~iara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD-----ARRAGIAMVYQLSVGERQM---VEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH-----HHHCCCCEECCCCHHHHHH---HHHHHH
T ss_conf 99899999889989999999995776898578999999999999999-----9987994894699899999---999999
Q ss_pred HHHCCCEEEEE--CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65148759986--5433321157789999899876
Q gi|254780709|r 190 QAKKVDVLIID--TAGRLHNNSILMAGIGKMIRVL 222 (321)
Q Consensus 190 ~~~~~DvvliD--TAGR~~~~~~lm~EL~ki~~v~ 222 (321)
-..+-+++|.| |+|- |....+++.++.+-+
T Consensus 97 l~~~p~llilDEPt~gL---D~~~~~~i~~~l~~l 128 (163)
T cd03216 97 LARNARLLILDEPTAAL---TPAEVERLFKVIRRL 128 (163)
T ss_pred HHHCCCEEEEECCCCCC---CHHHHHHHHHHHHHH
T ss_conf 97299999990975579---999999999999999
No 237
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0021 Score=44.24 Aligned_cols=93 Identities=24% Similarity=0.287 Sum_probs=58.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
.|+++|+.|+||||-+.+||+.+. =+=+-+.|-||++-.++ ..++....--+-.+. -=|-.+....+...-.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~----i~hlstgd~~r~~~~~~-t~lg~~~k~~i~~g~--lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG----LPHLDTGDILRAAIAER-TELGEEIKKYIDKGE--LVPDEIVNGLVKERLDE 74 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC----CCEECCCCCCCHHHCCC-CHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHH
T ss_conf 799989999988999999999769----97855220111100323-689999999987589--50417699799999975
Q ss_pred CCC---EEEEECCCCCCCHHHHHH
Q ss_conf 487---599865433321157789
Q gi|254780709|r 193 KVD---VLIIDTAGRLHNNSILMA 213 (321)
Q Consensus 193 ~~D---vvliDTAGR~~~~~~lm~ 213 (321)
. | .+|.|--.|.......++
T Consensus 75 ~-d~~~~~I~dg~PR~~~qa~~l~ 97 (178)
T COG0563 75 A-DCKAGFILDGFPRTLCQARALK 97 (178)
T ss_pred C-CCCCEEEEECCCCHHHHHHHHH
T ss_conf 0-6577299989983699999999
No 238
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.06 E-value=0.0013 Score=45.75 Aligned_cols=138 Identities=14% Similarity=0.215 Sum_probs=67.1
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245422899
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
+.+...|+++|+.||||||-+-++.. ...+. ..--.|..+ ..+
T Consensus 11 ~~~~~Ki~ilG~~~sGKTsll~~l~~----~~~~~------------------~~pT~g~~~---------~~v------ 53 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLAS----EDISH------------------ITPTQGFNI---------KTV------ 53 (173)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC----CCCCC------------------CCCCCCEEE---------EEE------
T ss_conf 68775899997999988999999856----99866------------------068113237---------999------
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCC---CC----
Q ss_conf 99651487599865433321157789999899876302223430112310233522577899-98764358---97----
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAG---TT---- 259 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~~---~~---- 259 (321)
..+++.+.+-||+|.-. +.++- ..+.. ..+-+++|+|++-- +.++.+ ..+++.+. ..
T Consensus 54 --~~~~~~~~lwD~~G~~~-----~~~~~------~~y~~-~a~~iI~VvD~td~-~~~~~~~~~l~~~l~~~~~~~~Pi 118 (173)
T cd04155 54 --QSDGFKLNVWDIGGQRA-----IRPYW------RNYFE-NTDCLIYVIDSADK-KRLEEAGAELVELLEEEKLAGVPV 118 (173)
T ss_pred --EECCEEEEEEECCCCHH-----HHHHH------HHHCC-CCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf --98999999985587510-----12689------97655-56379999966756-889999999999974130069838
Q ss_pred EEEEECCCCCC-----CHHHHHHHHHHHCCCEEEEE----CCCCCCC
Q ss_conf 69996545787-----06999999999769889997----5898132
Q gi|254780709|r 260 GLIMTKMDGTA-----RGGGLIPIVVTHKIPVYFLG----VGEGIND 297 (321)
Q Consensus 260 g~I~TKlD~ta-----~~G~~ls~~~~~~~Pi~fig----~Ge~i~D 297 (321)
=++.+|.|-.. ..--.|.+....+.|..++. +||.|++
T Consensus 119 Liv~NK~Dl~~a~~~~eI~~~l~l~~~~~~~~~i~~~SA~tG~Gi~E 165 (173)
T cd04155 119 LVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEEEECCCCCCCCCHHHHHHHHCHHHCCCCCCEEEEEECCCCCCHHH
T ss_conf 99997666777899999999858764348875899957857939899
No 239
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.06 E-value=0.005 Score=41.55 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=72.1
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245422899
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
.++-.-|+++|+.||||||-+.+|.. |..+-. .|.++ .+...+.
T Consensus 12 ~~k~~KililG~~~sGKTsil~~l~~-----~~~~~~----------------------~pT~G----~~~~~i~----- 55 (174)
T cd04153 12 PRKEYKVIIVGLDNAGKTTILYQFLL-----GEVVHT----------------------SPTIG----SNVEEIV----- 55 (174)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHC-----CCCCCC----------------------CCCCC----CCEEEEE-----
T ss_conf 89779999998999988999999973-----992771----------------------67236----0469999-----
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHC---CCC----
Q ss_conf 99651487599865433321157789999899876302223430112310233522577899-9876435---897----
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVA---GTT---- 259 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~---~~~---- 259 (321)
.+++.+.+-||||+-... .+.. .+ . ...+-+++|+|++-.+ .++.+ ..+++.+ ++.
T Consensus 56 ---~~~~~~~iwD~~G~e~~~-~~~~---~y-------~-~~a~~ii~VvD~sd~~-~~~~~~~~l~~~l~~~~~~~~pi 119 (174)
T cd04153 56 ---YKNIRFLMWDIGGQESLR-SSWN---TY-------Y-TNTDAVILVIDSTDRE-RLPLTKEELYKMLAHEDLRKAVL 119 (174)
T ss_pred ---ECCEEEEEEECCCCCCCC-CHHH---HH-------H-CCCCEEEEEEECCCHH-HHHHHHHHHHHHHHCCCCCCCCE
T ss_conf ---788899999899986566-2267---77-------0-5775379999767888-99999999999972610169828
Q ss_pred EEEEECCCCCCC-----HHHHHHHHHHHCCCEEEEE----CCCCCCC
Q ss_conf 699965457870-----6999999999769889997----5898132
Q gi|254780709|r 260 GLIMTKMDGTAR-----GGGLIPIVVTHKIPVYFLG----VGEGIND 297 (321)
Q Consensus 260 g~I~TKlD~ta~-----~G~~ls~~~~~~~Pi~fig----~Ge~i~D 297 (321)
=++.+|.|-... ....+.+-...+.|+.|.. +||.|++
T Consensus 120 li~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~Gv~e 166 (174)
T cd04153 120 LVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 99995555655789999999974777635980999966858919899
No 240
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.05 E-value=0.0019 Score=44.50 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=48.8
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--HHHHHHHHHHHH
Q ss_conf 231135444442478999999985226742677434512456889999975303532122358661--245422899996
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQ 190 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp--~~v~~~a~~~a~ 190 (321)
+|++.||.|+||||....||..+ ....+-+|.||+.+. .--...|+|.--... .| ..+.........
T Consensus 1 liiv~GvsGsGKSTia~~La~~l-----g~~~i~~D~~h~~~n----~~km~~G~pL~d~dr--~~wl~~l~~~~~~~~~ 69 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPAN----IAKMAAGIPLNDEDR--WPWLQALTDALLAKLA 69 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-----CCCEECCCCCCCHHH----HHHHHCCCCCCCCCH--HHHHHHHHHHHHHHHH
T ss_conf 98999189999999999999971-----995641543354768----999867999885237--8999999999999998
Q ss_pred HHCCCEEEEECCCC
Q ss_conf 51487599865433
Q gi|254780709|r 191 AKKVDVLIIDTAGR 204 (321)
Q Consensus 191 ~~~~DvvliDTAGR 204 (321)
..+..+|+-=||-+
T Consensus 70 ~~g~~vVv~cSaLk 83 (150)
T cd02021 70 SAGEGVVVACSALK 83 (150)
T ss_pred HCCCCEEEEEHHHH
T ss_conf 44998799843323
No 241
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=97.04 E-value=0.0041 Score=42.16 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf 5444442478999999985226742677434512456889-999975303532122358661245422899996514875
Q gi|254780709|r 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ-LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 (321)
Q Consensus 118 G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQ-L~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~Dv 196 (321)
|+-|+||||.+-.+.++++..++.|++ +|-|=.||..=+ =.+.-.-.++|+-..+. ....+-...-..-.-+..|+
T Consensus 1 G~AGTGKS~ll~~i~~~l~~~~~~v~v-tA~TGiAA~~i~gG~TiHs~~gi~~~~~~~--~~~~~~~~~~~~~~~~~~~v 77 (418)
T pfam05970 1 GYGGTGKTFLWNALSARIRSRGKIVLN-VASSGIAALLLPGGRTAHSRFGIPLDIDED--STCKIKRGSKLAELLKKASL 77 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHCCCCCEEHHHCCCCCCCCCCC--CCEEECCCHHHHHHHHHCCE
T ss_conf 979887999999999999768988999-896899985169987398526989887742--01121337788998740879
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC---CEEEEECCC
Q ss_conf 9986543332115778999989987630222343---011231023
Q gi|254780709|r 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP---HSVLQVLDA 239 (321)
Q Consensus 197 vliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p---~~~~lVlda 239 (321)
+|||=...+ +..+|+-|..+.|.+.+.....| ..++|+-|=
T Consensus 78 LIIDEiSMv--~~~lfd~id~~lr~i~~~~~~~PFGGiqvIl~GDf 121 (418)
T pfam05970 78 IIWDEAPMT--HRHCFEALDRTLRDILKNTDDKPFGGKTVVLGGDF 121 (418)
T ss_pred EEEECCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCH
T ss_conf 998541135--78999999999999871278767797479982447
No 242
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=97.02 E-value=0.0054 Score=41.34 Aligned_cols=84 Identities=24% Similarity=0.319 Sum_probs=50.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---------------CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH--
Q ss_conf 35444442478999999985226742677434---------------5124568899999753035321223586612--
Q gi|254780709|r 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---------------TFRSAAIDQLKIWADRTSADFVCSEIGSDAA-- 179 (321)
Q Consensus 117 vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D---------------tfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~-- 179 (321)
+-+-|+|||-++--||.+++++|++|++++=- +..-..=|-+ .++++.++|++..+.-...+
T Consensus 64 itvGGTGKTP~vi~L~~~L~~~G~k~~IlSRGYg~~~~~~~~v~~~~~~~~vGDEpl-lla~~~~~pV~V~~~R~~~~~~ 142 (339)
T PRK01906 64 VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGAKVKAPTAVTPASRASDAGDEPL-LIARRTDAPVWVCPDRVAAAQA 142 (339)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHCCCCEEEEECCHHHHHHH
T ss_conf 876887577999999999997699559985464555677666237864433176899-9874359608982569999999
Q ss_pred ----------HHHHHHHHHHH-HHCCCEEEEEC
Q ss_conf ----------45422899996-51487599865
Q gi|254780709|r 180 ----------ALAYEAFKQAQ-AKKVDVLIIDT 201 (321)
Q Consensus 180 ----------~v~~~a~~~a~-~~~~DvvliDT 201 (321)
-|.-|++|+.+ .+++|+|++|+
T Consensus 143 l~~~~~~~dvIIlDDGfQh~~l~rDl~Ivl~d~ 175 (339)
T PRK01906 143 LLAAHPEVDVIVSDDGLQHYRLARDVEIVVFDH 175 (339)
T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCEEEEEECC
T ss_conf 997488998899568531333468759999878
No 243
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.02 E-value=0.0048 Score=41.71 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=87.5
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE-------ECCC---CCHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHH
Q ss_conf 231135444442478999999985226742677-------4345---12456889999975-303532122358661245
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-------AGDT---FRSAAIDQLKIWAD-RTSADFVCSEIGSDAAAL 181 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lv-------a~Dt---fR~aA~eQL~~~a~-~~~v~~~~~~~~~dp~~v 181 (321)
|.++.|-=|+||||.+-+|.++.. |+|++++ ..|. ......+ +-+ -.|+=+++.. .|-...
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~~~~e~----~~El~nGCICCT~r--~dl~~~ 74 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLSDTGEE----VVELTNGCICCTVR--DDLLPA 74 (323)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC--CCEEEEEEECCCCCCCCCCCCCCCCCCC----EEEECCCCEEEECC--CHHHHH
T ss_conf 799811677998999999985458--9807999855740221677641348975----79836970787034--215899
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHHCC-CC
Q ss_conf 422899996514875998654333211577899998998763022234301123102335225778-9998764358-97
Q gi|254780709|r 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR-QVEMFHAVAG-TT 259 (321)
Q Consensus 182 ~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~-~a~~F~~~~~-~~ 259 (321)
. ..+.. ...+.|.|+|-|.|=-+ -...+.-..... .+. ....-+-++-|+||.-.-.... +.+.|.+.+. -+
T Consensus 75 ~-~~L~~-~~~~~D~ivIEtTGlA~-P~pv~~t~~~~~-~l~--~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD 148 (323)
T COG0523 75 L-ERLLR-RRDRPDRLVIETTGLAD-PAPVIQTFLTDP-ELA--DGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD 148 (323)
T ss_pred H-HHHHH-CCCCCCEEEEECCCCCC-CHHHHHHHHCCC-CCC--CCEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9-99985-25689989996887778-699999860651-224--540413369998478865456779999999998679
Q ss_pred EEEEECCCCCCCHH-HH-HHHHHH--HCCCEEEEECCCC
Q ss_conf 69996545787069-99-999999--7698899975898
Q gi|254780709|r 260 GLIMTKMDGTARGG-GL-IPIVVT--HKIPVYFLGVGEG 294 (321)
Q Consensus 260 g~I~TKlD~ta~~G-~~-ls~~~~--~~~Pi~fig~Ge~ 294 (321)
-++++|.|--..-. .+ -..... -..||.....|+.
T Consensus 149 ~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~~~~ 187 (323)
T COG0523 149 VIVLNKTDLVDAEELEALEARLRKLNPRARIIETSYGDV 187 (323)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 999836456898899999999997599986998123668
No 244
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.01 E-value=0.0021 Score=44.27 Aligned_cols=143 Identities=22% Similarity=0.317 Sum_probs=74.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
||.++|-.-+||||-+-+|.. .+ .| |. .. -.+-|+.+ |+. +..+.. ..
T Consensus 2 vVaivG~~n~GKSTL~n~L~g------~~-----~d--~~------~~-e~~~giTi-------~~~---~~~~~~--~~ 49 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG------IE-----TD--RL------PE-EKKRGITI-------DLG---FAYLDL--PS 49 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHC------CC-----CC--CC------HH-HHCCCEEE-------EEE---EEEEEC--CC
T ss_conf 999992688729999999849------64-----66--33------33-33486379-------854---687864--89
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHCCCCE--EEEECCCC
Q ss_conf 4875998654333211577899998998763022234301123102335225--7789998764358976--99965457
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVAGTTG--LIMTKMDG 268 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~~~~g--~I~TKlD~ 268 (321)
+..+.+|||+| | +.++..+ .+.+. ..+-.+||+||.-|-. -.+..... +..++.. ++++|+|-
T Consensus 50 ~~~i~~iDtPG--h--~~~~~~~---~~~~~-----~aD~~llVvda~~g~~~q~~e~~~~~-~~~~i~~~ivvlNK~D~ 116 (164)
T cd04171 50 GKRLGFIDVPG--H--EKFIKNM---LAGAG-----GIDLVLLVVAADEGIMPQTREHLEIL-ELLGIKRGLVVLTKADL 116 (164)
T ss_pred CCEEEEEECCC--H--HHHHHHH---HHHHH-----HCCEEEEEEECCCCCCHHHHHHHHHH-HHCCCCCEEEEEECCCC
T ss_conf 98999994878--7--9999999---99874-----26725899861778888899999999-87388727873463425
Q ss_pred CCCHHH--HHH-HHHH------HCCCEEEEEC--CCCCCCCCC
Q ss_conf 870699--999-9999------7698899975--898132555
Q gi|254780709|r 269 TARGGG--LIP-IVVT------HKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 269 ta~~G~--~ls-~~~~------~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
..+-.. ... +... .+.|+.+++. |+++++|..
T Consensus 117 v~~~~~~~~~~~i~~~l~~~~~~~~pii~iSA~tG~Gi~eL~~ 159 (164)
T cd04171 117 VDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 7978999999999999974399998299946989829999999
No 245
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=97.01 E-value=0.00089 Score=46.81 Aligned_cols=37 Identities=38% Similarity=0.539 Sum_probs=33.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEE-EEECCC
Q ss_conf 2311354444424789999999852267426-774345
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDT 149 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~-lva~Dt 149 (321)
++|++|+.++||||-+..|++|+.++|++|. ++-+|.
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~~~~g~~~~~~~~~d~ 39 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYLKRRGYRVAVVKHLDH 39 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 79999489998999999999999987994489998999
No 246
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.00 E-value=0.011 Score=39.22 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=52.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCC------CCEEEEEC-CCCCHHHHHHHHHHH-H-----HHCCCCCCCCCCCCC
Q ss_conf 1231135444442478999999985226------74267743-451245688999997-5-----303532122358661
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG------LKVMLAAG-DTFRSAAIDQLKIWA-D-----RTSADFVCSEIGSDA 178 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g------~kV~lva~-DtfR~aA~eQL~~~a-~-----~~~v~~~~~~~~~dp 178 (321)
.+.-+.|+.|+|||+-+-.+|......+ .+|+.+.+ .+|.+-=.+|+-.-- . .-.+-++......+-
T Consensus 20 ~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~~~~~~~~~~~l~~i~~~~~~~~e~~ 99 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNGEQQ 99 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHEEEECCCCHHHH
T ss_conf 39999999999899999999999854221169996199995577531999999987603266776433368437999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 2454228999965148759986543
Q gi|254780709|r 179 AALAYEAFKQAQAKKVDVLIIDTAG 203 (321)
Q Consensus 179 ~~v~~~a~~~a~~~~~DvvliDTAG 203 (321)
..++..........+.++|+||...
T Consensus 100 ~~~~~~l~~~~~~~~v~liViDSi~ 124 (226)
T cd01393 100 LEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9999999987524784289993220
No 247
>CHL00181 cbbX CbbX; Provisional
Probab=97.00 E-value=0.0062 Score=40.93 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=24.8
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 12311354444424789999999852267
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~ 140 (321)
.-++|.|+.|.||||.+--+|..|+.-|.
T Consensus 60 ~h~vF~GnPGTGKTTVARl~a~il~~lG~ 88 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYRLGY 88 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 53888789986799999999999998699
No 248
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.99 E-value=0.0071 Score=40.50 Aligned_cols=86 Identities=23% Similarity=0.437 Sum_probs=62.6
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532--1223586612454228999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF--VCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~--~~~~~~~dp~~v~~~a~~~ 188 (321)
-.++|+-|-.|+||+|-+-.+|..+. ++.+|+-+++-- ..+|++.-|+|+++.- +.--.++|-. +.+..
T Consensus 90 GS~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGEE----S~~Qik~RA~RLg~~~~~l~l~~et~l~----~Il~~ 160 (454)
T PRK11823 90 GSVVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGEE----SLQQIKLRAERLGLPSDNLYLLAETNLE----DILAT 160 (454)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCH----HHHHHHHHHHHHCCCCCCCEEEECCCHH----HHHHH
T ss_conf 64899507998889999999999985-599579981501----5789999999758888873788536899----99999
Q ss_pred HHHHCCCEEEEECCCCC
Q ss_conf 96514875998654333
Q gi|254780709|r 189 AQAKKVDVLIIDTAGRL 205 (321)
Q Consensus 189 a~~~~~DvvliDTAGR~ 205 (321)
....+.|+++||.-=-+
T Consensus 161 i~~~~P~~lIIDSIQT~ 177 (454)
T PRK11823 161 IEEEKPDLVVIDSIQTM 177 (454)
T ss_pred HHHHCCCEEEEECHHEE
T ss_conf 98609988999431115
No 249
>PRK07667 uridine kinase; Provisional
Probab=96.98 E-value=0.0011 Score=46.13 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=38.3
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 674123113544444247899999998522674267743451
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dtf 150 (321)
..-.+|.+.|..||||||-+.+|+..+...|..|.++..|-|
T Consensus 12 ~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~ 53 (190)
T PRK07667 12 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDH 53 (190)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 986999977989788999999999998665983799966624
No 250
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=96.98 E-value=0.0098 Score=39.51 Aligned_cols=127 Identities=24% Similarity=0.322 Sum_probs=71.7
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|++||..+|||+|-+-.|. |.+. ++ | .|-.+ +
T Consensus 4 VaivGrpNvGKSTLlN~L~------g~~i--~~----~-------------------------K~qtt-----------~ 35 (143)
T pfam10662 4 IMLIGRSGCGKTTLTQALN------GEEL--KY----K-------------------------KTQAI-----------E 35 (143)
T ss_pred EEEECCCCCCHHHHHHHHC------CCCE--EE----C-------------------------CCEEE-----------E
T ss_conf 9998999999999999975------9944--51----7-------------------------87079-----------8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH--HHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 87599865433321157789999899876302223430112310233522577--8999876435897699965457870
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL--RQVEMFHAVAGTTGLIMTKMDGTAR 271 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~--~~a~~F~~~~~~~g~I~TKlD~ta~ 271 (321)
+...+|||.|....+..+++.+..-. . ..+-++||+||+-..+.. ..++.|+. | -=+|++|.|-..+
T Consensus 36 ~~~~~IDTPG~~~~~~~~~~~~~~~~---~-----daDvil~vvDa~~~~~~~~~~~~~~~~k--p-vIlViNKiD~~~~ 104 (143)
T pfam10662 36 FSDNMIDTPGEYLENRRFYSALIVTA---A-----DADVIALVQDATEPWSVFPPGFASMFNK--P-VIGIITKIDLAKD 104 (143)
T ss_pred ECCCEEECCCCCCCCHHHHHHHHHHH---H-----HCCEEEEEEECCCCCCCCCHHHHHHCCC--C-EEEEEECCCCCCC
T ss_conf 55748999876656289999999999---6-----4999999987788667568778975479--8-8999980224575
Q ss_pred HHHHHHHH----HHHCC-CEEEEEC--CCCCCCCCC
Q ss_conf 69999999----99769-8899975--898132555
Q gi|254780709|r 272 GGGLIPIV----VTHKI-PVYFLGV--GEGINDLEP 300 (321)
Q Consensus 272 ~G~~ls~~----~~~~~-Pi~fig~--Ge~i~Dl~~ 300 (321)
-. .+..+ ...+. .|..|+. |+.+|+|..
T Consensus 105 ~~-~l~~~~~~~~~~~~~~i~~iSA~~g~Gid~L~~ 139 (143)
T pfam10662 105 EA-NIEMVEEWLNNAGAEKIFEVSAVTNEGIDELFA 139 (143)
T ss_pred HH-HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf 66-789999999758998799988989989999999
No 251
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.98 E-value=0.0015 Score=45.15 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=32.5
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf 23113544444247899999998522--674267743451
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTF 150 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~--g~kV~lva~Dtf 150 (321)
+|-+.|..||||||.+-.|...+.+. +.+|.+++.|.|
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 9897889987799999999998600269994899978787
No 252
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.017 Score=37.74 Aligned_cols=118 Identities=24% Similarity=0.239 Sum_probs=60.1
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHH-HCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHH
Q ss_conf 6741231135444442478999999985-22674-2677434512456889999975303532122----3586612454
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS----EIGSDAAALA 182 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~k-V~lva~DtfR~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~v~ 182 (321)
.-++.+||.|+.|+||||+.-=||+.+. .++.. ---..|+..| ++...+ .-.++|+.. ..+-|-..-.
T Consensus 35 ri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~-----~i~~g~-~~~~DviEiDAAS~~gVddiReL 108 (775)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCV-----ALAPGG-PGSLDVVEIDAASHGGVDDAREL 108 (775)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-----HHHCCC-CCCCCEEEECCCCCCCHHHHHHH
T ss_conf 976337623788878889999999996689999989888876378-----886389-88886687315655688999999
Q ss_pred HHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 22899996-5148759986543332115778999989987630222343011231023352
Q gi|254780709|r 183 YEAFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 (321)
Q Consensus 183 ~~a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g 242 (321)
.+.+.|+- ..+|-|.|||-+-++.... .+-|-| ..+..|..++|++ +||-
T Consensus 109 ~e~~~y~P~~~ryKVyIIDEaHmls~~a--fNALLK-------tLEEPP~hvvFIl-aTTe 159 (775)
T PRK07764 109 RERAFFAPAQSRYRIFIIDEAHMVTTAG--FNALLK-------IVEEPPEHLIFIF-ATTE 159 (775)
T ss_pred HHHCCCCCCCCCEEEEEEECHHHHCHHH--HHHHHH-------HHCCCCCCEEEEE-ECCC
T ss_conf 9854768767863599985354407999--999988-------6227864627999-5487
No 253
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.98 E-value=0.0066 Score=40.69 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=69.9
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245422899
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
.++..-|+++|+.|+||||-+-+|.. +.... -+|.+... ++
T Consensus 14 ~~ke~~ililGLd~aGKTTil~~lk~-----~~~~~----------------------~~PT~g~~------------~e 54 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKN-----DRLAQ----------------------HQPTQHPT------------SE 54 (184)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC-----CCCCC----------------------CCCCCCCC------------EE
T ss_conf 56614799996588988999999806-----99753----------------------05787886------------48
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99651487599865433321157789999899876302223430112310233522577899987643589769996545
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD 267 (321)
..+-+++.+.+.|..|.. +++..-+.+.. ..+-+++|+|++--+..-+..+.++..
T Consensus 55 ~~~~~~~~~~~wDlgG~~-----------~~R~lW~~Yy~-~~~~iIfVVDssD~~r~~eak~~L~~l------------ 110 (184)
T smart00178 55 ELAIGNIKFTTFDLGGHQ-----------QARRLWKDYFP-EVNGIVYLVDAYDKERFAESKRELDAL------------ 110 (184)
T ss_pred EEEECCEEEEEEECCCCH-----------HHHHHHHHHHC-CCCEEEEEEECCCHHHHHHHHHHHHHH------------
T ss_conf 999999999999889877-----------78899998821-675899997268688999999999998------------
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 787069999999997698899975898132555778999998728656
Q gi|254780709|r 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 (321)
Q Consensus 268 ~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd 315 (321)
++-....++|+..++.=|.+.+ ..++.++.+ .|++.+
T Consensus 111 --------l~~~~l~~~PlLilaNKqDl~~--a~~~~ei~~-~L~L~~ 147 (184)
T smart00178 111 --------LSDEELATVPFLILGNKIDAPY--AASEDELRY-ALGLTN 147 (184)
T ss_pred --------HHHHHHCCCCEEEEEECCCCCC--CCCHHHHHH-HHCCHH
T ss_conf --------6467655970999997567778--999999998-819512
No 254
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.97 E-value=0.041 Score=35.14 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=63.6
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC---------CCCCC---
Q ss_conf 7412311354444424789999999852-2674267743451245688999997530353212---------23586---
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC---------SEIGS--- 176 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~-~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~---------~~~~~--- 176 (321)
+.+++++.|..|+||||-+--....-.+ .|.+++.|+.+-- .+||..++...|.++-. .....
T Consensus 23 ~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~----~~~l~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~ 98 (501)
T PRK09302 23 KGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEES----PEDIIRNVASFGWDLQKLIDEGKLFILDASPDPS 98 (501)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCC
T ss_conf 997799983899999999999999998855997899985799----9999999998499868973268389996156743
Q ss_pred --------CCHHHHHHHHHHH-HHHCCCEEEEECCC--C--CCCHHHHHHHHHHHHHHHH
Q ss_conf --------6124542289999-65148759986543--3--3211577899998998763
Q gi|254780709|r 177 --------DAAALAYEAFKQA-QAKKVDVLIIDTAG--R--LHNNSILMAGIGKMIRVLK 223 (321)
Q Consensus 177 --------dp~~v~~~a~~~a-~~~~~DvvliDTAG--R--~~~~~~lm~EL~ki~~v~~ 223 (321)
|...+. ..+..+ +..+.+.|.||.-- | .....+.-+++..+.+.++
T Consensus 99 ~~~~~~~~dL~~l~-~~I~~~v~~~~~~RvViDSlt~l~~~~~~~~~~R~~l~~L~~~l~ 157 (501)
T PRK09302 99 EQEEAGEYDLSALI-ERIEYAIRKIKAKRVVIDSIEALFQQYDNPAVVRRELFRLFAWLK 157 (501)
T ss_pred CCCCCCCCCHHHHH-HHHHHHHHHHCCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 11133447689999-999999997199999999978998763587899999999999998
No 255
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.95 E-value=0.016 Score=38.08 Aligned_cols=146 Identities=22% Similarity=0.297 Sum_probs=74.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
+|.+||-.-|||.|-.=+|. |++.++++ +.-|+.- |...- .+.-.
T Consensus 1 ~VaIvGrpNVGKStLfN~L~------~~~~aIv~----------------~~~G~TR-------D~~~~------~~~~~ 45 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLT------GKRDAIVA----------------DTPGVTR-------DRKYG------DAEWG 45 (429)
T ss_pred CEEEECCCCCCHHHHHHHHH------CCCEEECC----------------CCCCCCC-------CCEEE------EEEEC
T ss_conf 98999999987899999987------88617615----------------9899887-------73379------99999
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCCCCCCEEEEECCCCCCHHH--HHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 487599865433321157789999-89987630222343011231023352257--789998764358976999654578
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIG-KMIRVLKRLDPHAPHSVLQVLDATTGQNA--LRQVEMFHAVAGTTGLIMTKMDGT 269 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~-ki~~v~~~~~~~~p~~~~lVlda~~gq~~--~~~a~~F~~~~~~~g~I~TKlD~t 269 (321)
+..+.||||||=...+..+...+. +....++ ..|-+++|+||..|-.. .+.++...+.-.--=+++-|.|+-
T Consensus 46 ~~~~~liDT~G~~~~~~~~~~~~~~q~~~ai~-----~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~ 120 (429)
T TIGR03594 46 GREFILIDTGGIEEDDDGLDKQIREQAEIAIE-----EADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-----HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 90799998989898743789999999999998-----6799999985776898679999999987199789999834675
Q ss_pred CCHHHHHHHHHHHCCC-EEEEEC--CCCCCCCC
Q ss_conf 7069999999997698-899975--89813255
Q gi|254780709|r 270 ARGGGLIPIVVTHKIP-VYFLGV--GEGINDLE 299 (321)
Q Consensus 270 a~~G~~ls~~~~~~~P-i~fig~--Ge~i~Dl~ 299 (321)
+.-..++-.|.+|.. +.+|+. |..+++|.
T Consensus 121 -~~~~~~~ef~~LG~~~~i~iSA~h~~Gi~~L~ 152 (429)
T TIGR03594 121 -KEDAVAAEFYSLGFGEPIPISAEHGRGIGDLL 152 (429)
T ss_pred -CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
T ss_conf -31456999998368986887420467999999
No 256
>PTZ00301 uridine kinase; Provisional
Probab=96.94 E-value=0.0012 Score=45.92 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=36.0
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCC
Q ss_conf 74123113544444247899999998522-6-742677434512
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDA-G-LKVMLAAGDTFR 151 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~-g-~kV~lva~DtfR 151 (321)
+|.||.++|..||||||.+.+|+..+..+ | .+|.+++.|.|.
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy 45 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 98899996887678999999999998761499807998367667
No 257
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.94 E-value=0.0023 Score=43.97 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=74.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE---------ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 41231135444442478999999985226742677---------434512456889999975303532122358661245
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA---------AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lv---------a~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v 181 (321)
.+-|.++|--|+||||.+=-|.+.-..-. +.+-| .+|. -..|+=+ ++-+.
T Consensus 2 ~Rniai~gH~gaGKTtL~EalL~~~G~i~-r~G~V~~~~~~g~t~~D~---~~eE~~R------~iSi~----------- 60 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIR-EAGAVKARKSRKHATSDW---MEIEKQR------GISVT----------- 60 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEEECCCCCCCCCCC---HHHHHHC------CCEEE-----------
T ss_conf 01799984799998999999998668633-385463036888604688---7999865------94486-----------
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH-HHHHHHHHHHCCCC-
Q ss_conf 4228999965148759986543332115778999989987630222343011231023352257-78999876435897-
Q gi|254780709|r 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA-LRQVEMFHAVAGTT- 259 (321)
Q Consensus 182 ~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~-~~~a~~F~~~~~~~- 259 (321)
-++-.+.-+++.+=||||.|- .+-..|...-.+++ +-.++|+||..|=.+ .+.+-.+.+..++-
T Consensus 61 --~~~~~~~w~~~kinliDTPG~----~DF~~e~~~al~v~--------D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~ 126 (267)
T cd04169 61 --SSVMQFEYRDCVINLLDTPGH----EDFSEDTYRTLTAV--------DSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI 126 (267)
T ss_pred --CCEEEEEECCEEEEEEECCCC----HHHHHHHHHHHHHH--------HCEEEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf --363788789989999979697----78999999999886--------4547995256665355899999999729997
Q ss_pred EEEEECCCC-CCCHHHHH-HHHHHHCCCE
Q ss_conf 699965457-87069999-9999976988
Q gi|254780709|r 260 GLIMTKMDG-TARGGGLI-PIVVTHKIPV 286 (321)
Q Consensus 260 g~I~TKlD~-ta~~G~~l-s~~~~~~~Pi 286 (321)
=+.++|||- .+..-.+| ++...++.++
T Consensus 127 iifINKmDr~~adf~~~l~~i~~~lg~~~ 155 (267)
T cd04169 127 ITFINKLDREGRDPLELLDEIEEELGIDC 155 (267)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99985345678987899999999868775
No 258
>PRK08116 hypothetical protein; Validated
Probab=96.94 E-value=0.0068 Score=40.61 Aligned_cols=92 Identities=21% Similarity=0.342 Sum_probs=57.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
=++|.|+.|+|||--++=+|+.+..+|.+|+.++.-.+ +++|+.- |......+ ..+-+.. ..
T Consensus 110 GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~l----l~~lk~~--------~~~~~~~~----~~e~l~~--l~ 171 (262)
T PRK08116 110 GLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPEL----LNRIKST--------YNSEGKED----ENEIIRA--LD 171 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH----HHHHHHH--------HHCCCCHH----HHHHHHH--HH
T ss_conf 18998989998999999999999987993999889999----9999999--------86356101----9999998--61
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 487599865433321157789999899876302
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~ 225 (321)
++|+++||--|--....--. .++..+|+..
T Consensus 172 ~~dLLIiDDlG~e~~t~w~~---e~lf~IIn~R 201 (262)
T PRK08116 172 NADLLILDDLGAEKDTEWVR---EKLYNIIDSR 201 (262)
T ss_pred CCCEEEEEHHCCCCCCHHHH---HHHHHHHHHH
T ss_conf 29989983221456987899---9999999999
No 259
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.92 E-value=0.002 Score=44.29 Aligned_cols=143 Identities=21% Similarity=0.200 Sum_probs=74.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 13544444247899999998522674267743451245688999997530353212235866124542289999651487
Q gi|254780709|r 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 (321)
Q Consensus 116 ~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~D 195 (321)
+||..-|||+|-+-.|.. .++. ++ +.|.-+ .||..-. ....+..
T Consensus 1 ivG~pNvGKSTL~N~L~g------~~~~-vs-------------------~~pgtT----rd~~~~~------~~~~~~~ 44 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG------ARQK-VG-------------------NWPGVT----VEKKEGR------FKLGGKE 44 (158)
T ss_pred CCCCCCCCHHHHHHHHHC------CCCE-EC-------------------CCCCCE----EEEEEEE------EEECCEE
T ss_conf 979898889999999959------9864-61-------------------789827----6347889------9629937
Q ss_pred EEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHH
Q ss_conf 59986543-332115778999989987630222343011231023352257789998764-3589769996545787069
Q gi|254780709|r 196 VLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTARGG 273 (321)
Q Consensus 196 vvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~-~~~~~g~I~TKlD~ta~~G 273 (321)
++++||+| |.-.... .+| ++.+.. ......+-+++|+||+.-..-...+....+ ..| .=++++|.|.-.+-.
T Consensus 45 ~~lvDtpGi~~~~~~~-~~e--~i~~~~--~~~~~~d~vl~vvD~~~~~~~l~~~~~l~~~~~p-~ivV~NK~D~~~~~~ 118 (158)
T cd01879 45 IEIVDLPGTYSLSPYS-EDE--KVARDF--LLGEKPDLIVNVVDATNLERNLYLTLQLLELGLP-VVVALNMIDEAEKRG 118 (158)
T ss_pred EEEEECCCCCCCCCCC-HHH--HHHHHH--HHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC-EEEEEEHHHHHHHCC
T ss_conf 9999798741256413-567--899999--9851787179997774067768999999865998-899940277655225
Q ss_pred HH---HHHHHHHCCCEEEEEC--CCCCCCCCC
Q ss_conf 99---9999997698899975--898132555
Q gi|254780709|r 274 GL---IPIVVTHKIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 274 ~~---ls~~~~~~~Pi~fig~--Ge~i~Dl~~ 300 (321)
.. -.+....+.|+.+|+. ||.+++|..
T Consensus 119 ~~~~~~~l~~~~~~~ii~iSA~~g~Gi~~L~~ 150 (158)
T cd01879 119 IKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 46679999987199489998778979999999
No 260
>COG2403 Predicted GTPase [General function prediction only]
Probab=96.92 E-value=0.01 Score=39.37 Aligned_cols=137 Identities=19% Similarity=0.265 Sum_probs=76.7
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCC----HHHHHHHHHHHHHH--------------CCC
Q ss_conf 66741231135444442478999999985226742677434-512----45688999997530--------------353
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-TFR----SAAIDQLKIWADRT--------------SAD 168 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D-tfR----~aA~eQL~~~a~~~--------------~v~ 168 (321)
..+|.+-..-=-+|+|||+.-+..|..++..|.+|..|..- .|| -.++|-|...++.- .|+
T Consensus 124 ~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~I~ 203 (449)
T COG2403 124 LEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESYIP 203 (449)
T ss_pred HCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCHHHHHHHHCHHHCCCCCCCHHHHHHHHHCCC
T ss_conf 14855999972366556788899999998669823799557023377310018977377652642255666887874364
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-CHHHH
Q ss_conf 212-2358661245422899996514875998654333211577899998998763022234301123102335-22577
Q gi|254780709|r 169 FVC-SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT-GQNAL 246 (321)
Q Consensus 169 ~~~-~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~-gq~~~ 246 (321)
... .--|-|=..+++++.. -.|+|+.|-.|- + +-...|+.-+-|.||.. |++..
T Consensus 204 tg~~vlAGvdy~~vlke~~~-----~aD~IlwdGgnn---d----------------fPfvkpd~~Ivvvda~rpg~ei~ 259 (449)
T COG2403 204 TGGGVLAGVDYGTVLKEGEK-----EADFILWDGGNN---D----------------FPFVKPDLHIVVVDALRPGEEIG 259 (449)
T ss_pred CCCCEEEEEEHHHHHHHHHH-----HCCEEEEECCCC---C----------------CCCCCCCCEEEEECCCCCCHHHC
T ss_conf 35534652048999987764-----155899948887---7----------------88525770599933888725652
Q ss_pred HHHHHHHHHCC---CCEEEEECCCCCCCH
Q ss_conf 89998764358---976999654578706
Q gi|254780709|r 247 RQVEMFHAVAG---TTGLIMTKMDGTARG 272 (321)
Q Consensus 247 ~~a~~F~~~~~---~~g~I~TKlD~ta~~ 272 (321)
.|---+. -|-+|+||.|+...+
T Consensus 260 ----~~pGe~~irlAD~VIItkveea~~~ 284 (449)
T COG2403 260 ----SFPGELRIRLADLVIITKVEEAMAE 284 (449)
T ss_pred ----CCCCCEEEEECCEEEEECCCCHHHH
T ss_conf ----6877315322128999613513367
No 261
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.91 E-value=0.0028 Score=43.27 Aligned_cols=125 Identities=21% Similarity=0.295 Sum_probs=65.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC---------CCCC--C--CCCHH
Q ss_conf 311354444424789999999852267426774345124568899999753035321---------2235--8--66124
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---------CSEI--G--SDAAA 180 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~---------~~~~--~--~dp~~ 180 (321)
|.++|--++||||.++.|.+....-.. ...+.++.-++..|-.-+ ..+. | -|.+.
T Consensus 2 i~iiGHvD~GKSTL~g~lL~~~g~i~~------------~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~ 69 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDK------------RTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGL 69 (219)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCH------------HHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEE
T ss_conf 899966899899999999998599768------------89999999998549987505566138987985892588589
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH---------HHHHHHHH
Q ss_conf 542289999651487599865433321157789999899876302223430112310233522---------57789998
Q gi|254780709|r 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ---------NALRQVEM 251 (321)
Q Consensus 181 v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq---------~~~~~a~~ 251 (321)
. ++.-+++.+.||||.|.-..-.|++.-+. ..+-.+||+||..|. +-.+.+..
T Consensus 70 ~------~f~~~~~~~~iiDtPGH~df~~~mi~g~~------------~ad~ailvvda~~g~~e~g~~~~~QTreH~~l 131 (219)
T cd01883 70 A------KFETEKYRFTILDAPGHRDFVPNMITGAS------------QADVAVLVVDARKGEFEAGFEKGGQTREHALL 131 (219)
T ss_pred E------EEEECCEEEEEEECCCCHHHHHHHHHHHH------------HCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9------99849936999878972667889998775------------31668999985767510366777659999999
Q ss_pred HHHHCCCCEE--EEECCCCC
Q ss_conf 7643589769--99654578
Q gi|254780709|r 252 FHAVAGTTGL--IMTKMDGT 269 (321)
Q Consensus 252 F~~~~~~~g~--I~TKlD~t 269 (321)
...+++..+ .+.|||..
T Consensus 132 -~~~lGik~iIVavNKMD~v 150 (219)
T cd01883 132 -ARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred -HHHCCCCEEEEEEECCCCC
T ss_conf -9984997489999875368
No 262
>PRK10037 cell division protein; Provisional
Probab=96.91 E-value=0.0012 Score=45.98 Aligned_cols=151 Identities=13% Similarity=0.182 Sum_probs=77.5
Q ss_pred CEEECCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH------HHHHHHHHH---------------HHCCCC
Q ss_conf 123113544-4442478999999985226742677434512456------889999975---------------303532
Q gi|254780709|r 112 HVILVVGVN-GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA------IDQLKIWAD---------------RTSADF 169 (321)
Q Consensus 112 ~vil~vG~n-G~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA------~eQL~~~a~---------------~~~v~~ 169 (321)
.+|.++|+. ||||||.+|-||.-+.+.|++|+.|-+|.--.-. .++-.-|+. .-|+.|
T Consensus 2 ~iial~s~kGGVGkTTltAnLA~aL~~~g~~VlaID~dpqN~Lrlhfg~~~~~~~Gwa~a~l~g~~W~~a~~~~~~gl~~ 81 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDL 81 (250)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCEE
T ss_conf 37999607888768999999999999779918999578256678754998544772999985699789998505699369
Q ss_pred CCCCCCCCCHH--HHHHH-----------HHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 12235866124--54228-----------99996-514875998654333211577899998998763022234301123
Q gi|254780709|r 170 VCSEIGSDAAA--LAYEA-----------FKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 (321)
Q Consensus 170 ~~~~~~~dp~~--v~~~a-----------~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~l 235 (321)
. ++|.-... ..++. +.... ..+||+|||||.-- ....++++-. .-+.++.
T Consensus 82 L--PfG~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~vliD~P~g---~s~~~~~~l~-----------~AD~vLv 145 (250)
T PRK10037 82 L--PFGQLSIEEQENPQHWQTTLGDICSALQQLKASGRYQWILLDLPRG---ASPLTRQLLS-----------LCDHSLA 145 (250)
T ss_pred E--ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC---CCHHHHHHHH-----------HCCEEEE
T ss_conf 7--2787998998638877651799999986200257899899965999---8299999998-----------5787899
Q ss_pred ECCCCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHH-HHHHHHH
Q ss_conf 102335225778999876435-8976999654578706999-9999997
Q gi|254780709|r 236 VLDATTGQNALRQVEMFHAVA-GTTGLIMTKMDGTARGGGL-IPIVVTH 282 (321)
Q Consensus 236 Vlda~~gq~~~~~a~~F~~~~-~~~g~I~TKlD~ta~~G~~-ls~~~~~ 282 (321)
|+-+- +...+..-.+.. .-..+++..+|-.+...-= ..+..+.
T Consensus 146 Vv~aD----a~s~~~L~q~~~~~g~~~liNq~~~~s~l~~Dl~~l~~q~ 190 (250)
T PRK10037 146 IVNVD----ANCHIRLHQQALPAGAHILINDLRIGSQLQDDLYQLWLQS 190 (250)
T ss_pred EECCC----HHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 83678----7789987342147898277516671104669999999974
No 263
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.90 E-value=0.014 Score=38.50 Aligned_cols=164 Identities=23% Similarity=0.291 Sum_probs=87.5
Q ss_pred EECCCC-CCCCHHHHHHHHHHHHHHCCCCEEE--EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH----HHHHHHH
Q ss_conf 311354-4444247899999998522674267--74345124568899999753035321223586612----4542289
Q gi|254780709|r 114 ILVVGV-NGVGKTTVIGKLSKKMSDAGLKVML--AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA----ALAYEAF 186 (321)
Q Consensus 114 il~vG~-nG~GKTTT~aKLA~~~~~~g~kV~l--va~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~----~v~~~a~ 186 (321)
+++.|+ -|+||||...=|..-++++|.+|-- +.-|---|+ -+....|.|.+ +=||- +.+++..
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~------~H~~atG~~sr----NLD~~mm~~~~v~~~f 72 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPG------YHTAATGRPSR----NLDSWMMGEEGVRALF 72 (451)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH------HHHHHHCCCCC----CCCHHHCCHHHHHHHH
T ss_conf 5995488888589999999999986687216655687863813------56676388567----7765446998999999
Q ss_pred HHHHHHCCCEEEEECC-----CCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-CHHHHHHHHHH---HHHC
Q ss_conf 9996514875998654-----3332-11577899998998763022234301123102335-22577899987---6435
Q gi|254780709|r 187 KQAQAKKVDVLIIDTA-----GRLH-NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT-GQNALRQVEMF---HAVA 256 (321)
Q Consensus 187 ~~a~~~~~DvvliDTA-----GR~~-~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~-gq~~~~~a~~F---~~~~ 256 (321)
.+ ..++.|+.+|--. |+-. .+..=-..+.++- + .-++||+|+.- .+.+.-+++-| ...+
T Consensus 73 ~~-~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l---~-------~PVvLVid~~~~s~S~AAiv~G~~~fdp~v 141 (451)
T COG1797 73 AR-AAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLL---G-------APVVLVVDASGLSRSVAAIVKGFKHFDPDV 141 (451)
T ss_pred HH-HCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHH---C-------CCEEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 98-627898799961230236887776777799999985---9-------998999957522578999998898619988
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEECCCCCCCCCC
Q ss_conf 8976999654578706999999999-7698899975898132555
Q gi|254780709|r 257 GTTGLIMTKMDGTARGGGLIPIVVT-HKIPVYFLGVGEGINDLEP 300 (321)
Q Consensus 257 ~~~g~I~TKlD~ta~~G~~ls~~~~-~~~Pi~fig~Ge~i~Dl~~ 300 (321)
++.|||+++.-+.....-+-..+.. +++| .+|.=.+=++++.
T Consensus 142 ~iaGVIlNrVgserH~~llr~Ale~~~gv~--vlG~lpr~~~l~l 184 (451)
T COG1797 142 NIAGVILNRVGSERHYELLRDALEEYTGVP--VLGYLPRDDDLEL 184 (451)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCC
T ss_conf 257899724777889999998755327985--7987427855678
No 264
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.018 Score=37.69 Aligned_cols=90 Identities=24% Similarity=0.434 Sum_probs=67.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHH
Q ss_conf 4123113544444247899999998522674267743451245688999997530353212--23586612454228999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--SEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~--~~~~~dp~~v~~~a~~~ 188 (321)
-.++|+-|=.|.||+|.+=.+|+.+.+++ +|+-|++.- ...|.+--|+|++++.-. .-.+.+-- +-++.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE----S~~QiklRA~RL~~~~~~l~l~aEt~~e----~I~~~ 163 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE----SLQQIKLRADRLGLPTNNLYLLAETNLE----DIIAE 163 (456)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCC----CHHHHHHHHHHHCCCCCCEEEEHHCCHH----HHHHH
T ss_conf 61799736898779899999999987059-579996776----7899999999828996455774112899----99999
Q ss_pred HHHHCCCEEEEECCCCCCCHH
Q ss_conf 965148759986543332115
Q gi|254780709|r 189 AQAKKVDVLIIDTAGRLHNNS 209 (321)
Q Consensus 189 a~~~~~DvvliDTAGR~~~~~ 209 (321)
...++.|+++||.-=-++.+.
T Consensus 164 l~~~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 164 LEQEKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred HHHCCCCEEEEECCCEECCCC
T ss_conf 985499789996541230263
No 265
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.0037 Score=42.51 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC---CCCCCCC-HHHHH
Q ss_conf 6674123113544444247899999998522674267743451245688999997530353212---2358661-24542
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC---SEIGSDA-AALAY 183 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~---~~~~~dp-~~v~~ 183 (321)
..-|+-++|.||.|+||++++-.+|.++.-++..... +|. ..++-..+..-++.++. ...+... ..|.-
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~-~~~------~~~~i~~g~HPD~~~i~~~~~~~~~k~k~~I~I 95 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAL-AQR------TRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVI 95 (319)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC-CCH------HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCH
T ss_conf 9942068758999878999999999998379979765-433------889996689989687753444454311234869
Q ss_pred HHHHHHH--------HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 2899996--------514875998654333211577899998998763022234301123102335225778999
Q gi|254780709|r 184 EAFKQAQ--------AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 (321)
Q Consensus 184 ~a~~~a~--------~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~ 250 (321)
+.+.... ..++-|+|||-|-+|..+.. +-| =|..+..|..+++++=+...++....+.
T Consensus 96 dqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~Aa--Nal-------LK~LEEPp~~~~~iL~~~~~~~ll~TI~ 161 (319)
T PRK08769 96 EQVREISQKLALTPQYGIAQVVIVDPADAINRSAC--NAL-------LKTLEEPSPGRYLWLISAQPARLPATIR 161 (319)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHH--HHH-------HHHHCCCCCCEEEEEEECCHHHCCHHHH
T ss_conf 99999999961372027956999806675289999--999-------9982279988489998699365824776
No 266
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=96.88 E-value=0.00066 Score=47.73 Aligned_cols=36 Identities=33% Similarity=0.463 Sum_probs=30.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 231135444442478999999985226742677434
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D 148 (321)
+|.+.|+.||||||.+-+|+..+...|.++..+.+|
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d 36 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGD 36 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 989989985719999999999966058776412431
No 267
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.0041 Score=42.18 Aligned_cols=114 Identities=16% Similarity=0.286 Sum_probs=61.7
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHH-CC-C-CEEEEECCCC--CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 667412311354444424789999999852-26-7-4267743451--24568899999753035321223586612454
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AG-L-KVMLAAGDTF--RSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~-~g-~-kV~lva~Dtf--R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~ 182 (321)
..-|+-++|.||.|+||||++--+|..+-. .+ + -+=++..+.. +.=.+||.+..-+.+...
T Consensus 23 ~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~~~~I~vd~IR~l~~~~~~~-------------- 88 (313)
T PRK05564 23 GKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPINKKSIGVDDIRNIIEEVNKK-------------- 88 (313)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC--------------
T ss_conf 998750432799985099999999999828997788986588633225699989999999998408--------------
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 22899996514875998654333211577899998998763022234301123102335225778999
Q gi|254780709|r 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 (321)
Q Consensus 183 ~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~ 250 (321)
....+|=|+|||-|-+|..... +.+=|..+..|..+++.+=++.-+.....+.
T Consensus 89 ------p~~g~~KV~II~~ae~m~~~Aa---------NALLKtLEEPP~~t~fIL~t~~~~~lLpTI~ 141 (313)
T PRK05564 89 ------PYEGDKKVIIIYKSEKMTEQAQ---------NAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred ------CCCCCCEEEEECCHHHHCHHHH---------HHHHHCCCCCCCCEEEEEEECCHHHCCCHHH
T ss_conf ------6258956999807777589999---------9984550368998589986498354757787
No 268
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.88 E-value=0.0012 Score=46.03 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=84.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
+.|+-++|.-+|||||.+-||...++.+|.+|+.|--+... ..+ ...|+|+-. .+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~-------------~~~----D~~GkDs~r--------~~ 56 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD-------------FDL----DKPGKDTYR--------HR 56 (161)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-------------CCC----CCCCCCCCH--------HH
T ss_conf 72899996279973428999999997579379999865877-------------777----889876610--------00
Q ss_pred HHCCCEEEEECCCCCCCHHHHH-HHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 5148759986543332115778-999989987630222343011231023352257789998764358976999654578
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm-~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~t 269 (321)
..+.+.+++=+.+|...-...+ .+|..+ +..+.+. .+..| ++-|+ ..++-.+++-+-++.
T Consensus 57 ~aGa~~~v~~s~~~~~~~~~~~~~~L~~v---l~~l~~~--~D~vL-------------VEGFK-~~~~pKI~~~r~~~~ 117 (161)
T COG1763 57 KAGADQVVVASDHRTALMTRTPDRDLDAV---LSRLDPL--LDLVL-------------VEGFK-EEPLPKIVLGRDEEG 117 (161)
T ss_pred CCCCCEEEEECCCEEEEEEECCCCCHHHH---HHHCCCC--CCEEE-------------EECCC-CCCCCEEEEECCCCC
T ss_conf 35663499955978999982687689999---9742755--67999-------------95256-677778999566655
Q ss_pred C---CHHHHHHH-HHHHCCCEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 7---06999999-99976988999758981325557789999987
Q gi|254780709|r 270 A---RGGGLIPI-VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 (321)
Q Consensus 270 a---~~G~~ls~-~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~l 310 (321)
. ......++ ......|+.++..= .+.++. +++..++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~--~~~~~~~~~ 159 (161)
T COG1763 118 DREPVDVIDPAVIAVAKDAPLAEVTDL-PVLDLN--DVEALADFV 159 (161)
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCCC-CHHHCC--CHHHHHHHH
T ss_conf 445543222112100143000000368-423210--058888754
No 269
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.88 E-value=0.0098 Score=39.52 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHH
Q ss_conf 67412311354444424789999999852267--4267743451245688999997530-35321223586612454228
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRT-SADFVCSEIGSDAAALAYEA 185 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~--kV~lva~DtfR~aA~eQL~~~a~~~-~v~~~~~~~~~dp~~v~~~a 185 (321)
..|.-+++.|++|+|||+|+-.+...++.... .+.-|-|-.++--. .=+...++.+ +.++ +..+-|..-.++.
T Consensus 53 ~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~-~i~~~i~~~L~~~~~---p~~G~s~~~~~~~ 128 (394)
T PRK00411 53 SRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRY-AILSEIARSLFGHPP---PSSGLSFDELFDK 128 (394)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH-HHHHHHHHHHCCCCC---CCCCCCHHHHHHH
T ss_conf 999847998899998999999999999974689659999696689899-999999999569989---8778789999999
Q ss_pred HHHHHHH--CCCEEEEECCCCCCCH--HHHHHHHHH
Q ss_conf 9999651--4875998654333211--577899998
Q gi|254780709|r 186 FKQAQAK--KVDVLIIDTAGRLHNN--SILMAGIGK 217 (321)
Q Consensus 186 ~~~a~~~--~~DvvliDTAGR~~~~--~~lm~EL~k 217 (321)
+...-.+ ++=+|++|=.-.+-.. .+++-.|-.
T Consensus 129 l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r 164 (394)
T PRK00411 129 IAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLLR 164 (394)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 999861669758999965540203665089999985
No 270
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=96.88 E-value=0.02 Score=37.31 Aligned_cols=135 Identities=20% Similarity=0.276 Sum_probs=71.7
Q ss_pred CCCCCE-EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC---------CCC-CC
Q ss_conf 667412-3113544444247899999998522674267743451245688999997530353212---------235-86
Q gi|254780709|r 108 SHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC---------SEI-GS 176 (321)
Q Consensus 108 ~~~p~v-il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~---------~~~-~~ 176 (321)
..+|++ |.++|==-+||+|.+|-|.+.+..- | ....++++.-+...|-.-+. .+. ..
T Consensus 3 ~~k~~l~i~~~GhVD~GKSTL~G~Ll~~~g~v---------~---~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rG 70 (443)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKLGGI---------D---KRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERG 70 (443)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCC---------C---HHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCC
T ss_conf 88876599999477982888899999873884---------6---88999998888871787200044530776676367
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH---------HHHH
Q ss_conf 6124542289999651487599865433321157789999899876302223430112310233522---------5778
Q gi|254780709|r 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ---------NALR 247 (321)
Q Consensus 177 dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq---------~~~~ 247 (321)
-...+++ .++.-.++.+.+||++|.-..=.|++.-. +.+|-.+||+||..|- .-.+
T Consensus 71 iTidv~~---~~f~t~~~~~~iiD~PGH~~fi~nmi~Ga------------s~aD~ailvVdA~~G~~e~gf~~~gQTre 135 (443)
T PTZ00141 71 ITIDIAL---WKFETPKYYYTVIDAPGHRDFIKNMITGT------------SQADVALLVVPAEVGGFEGAFSKEGQTRE 135 (443)
T ss_pred CEEEEEE---EEEECCCEEEEEEECCCHHHHHHHHHHHH------------CCCCEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 1073479---99943988999998997288899999634------------10775899998677852134666786399
Q ss_pred HHHHHHHHCCCCEEE--EECCCCCC
Q ss_conf 999876435897699--96545787
Q gi|254780709|r 248 QVEMFHAVAGTTGLI--MTKMDGTA 270 (321)
Q Consensus 248 ~a~~F~~~~~~~g~I--~TKlD~ta 270 (321)
.+.. ...+++..+| ++|||...
T Consensus 136 H~~i-~~~lgv~~iIVaVNKmD~v~ 159 (443)
T PTZ00141 136 HALL-AFTLGVKQIIVGINKMDTCD 159 (443)
T ss_pred HHHH-HHHCCCCEEEEEEEEECCCC
T ss_conf 9999-99739975999999621566
No 271
>PRK12377 putative replication protein; Provisional
Probab=96.87 E-value=0.006 Score=41.02 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=59.6
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 36674123113544444247899999998522674267743451245688999997530353212235866124542289
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
+.....-+.|+|++|+|||.-+.=||+.+-++|++|.++++- .=+++|+.=- ..+..-..+ +
T Consensus 97 F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~----dLv~~L~~a~----------~~g~~~~k~----l 158 (248)
T PRK12377 97 LMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP----DVMSRLHESY----------DNGQSGEKF----L 158 (248)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HHHHHHHHHH----------HCCCCHHHH----H
T ss_conf 731886089989999878899999999999879969998899----9999999999----------848509999----9
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9996514875998654333211577899998998763
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~ 223 (321)
. ....+|++|||--|-.+.+.. |-..+.+++.
T Consensus 159 ~--~l~~~dLLIIDElG~~~~s~~---~~~llfqlI~ 190 (248)
T PRK12377 159 Q--ELCKVDLLVLDEIGIQRETKN---EQVVLNQIID 190 (248)
T ss_pred H--HHHCCCEEEEHHCCCCCCCHH---HHHHHHHHHH
T ss_conf 9--973389898600057889867---9999999999
No 272
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.87 E-value=0.0017 Score=44.85 Aligned_cols=174 Identities=16% Similarity=0.231 Sum_probs=91.5
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 99998785201001210001366741231135444442478999999985226742677434512456889999975303
Q gi|254780709|r 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 (321)
Q Consensus 87 ~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~ 166 (321)
.+.+.|.+++....+...+ ....-+.++|.+-|||.+-+--| .. +..++|+ +
T Consensus 196 ~~~~~l~~ll~~~~~g~il---r~G~kvvIiG~PNvGKSSLLNaL----~~--~d~AIVT-------------------d 247 (454)
T COG0486 196 ELIAELDELLATAKQGKIL---REGLKVVIIGRPNVGKSSLLNAL----LG--RDRAIVT-------------------D 247 (454)
T ss_pred HHHHHHHHHHHHHHHHHHH---HCCCEEEEECCCCCCHHHHHHHH----HC--CCCEEEC-------------------C
T ss_conf 9999999999744421366---45864999879988679999988----66--7866742-------------------8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH
Q ss_conf 5321223586612454228999-965148759986543-33211577899998998763022234301123102335225
Q gi|254780709|r 167 ADFVCSEIGSDAAALAYEAFKQ-AQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 (321)
Q Consensus 167 v~~~~~~~~~dp~~v~~~a~~~-a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~ 244 (321)
+ .|+ -+|.++. ...+|+-+.|+|||| |-+.|.- |-.-|.|..+... ..+.+++|+|++.+-.
T Consensus 248 I------~GT-----TRDviee~i~i~G~pv~l~DTAGiRet~d~V---E~iGIeRs~~~i~--~ADlvL~v~D~~~~~~ 311 (454)
T COG0486 248 I------AGT-----TRDVIEEDINLNGIPVRLVDTAGIRETDDVV---ERIGIERAKKAIE--EADLVLFVLDASQPLD 311 (454)
T ss_pred C------CCC-----CCCEEEEEEEECCEEEEEEECCCCCCCCCHH---HHHHHHHHHHHHH--HCCEEEEEEECCCCCC
T ss_conf 9------997-----4103789999898899998567766673489---9999999999998--5998999970887776
Q ss_pred HHHHHHHHHHHCCC---CEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEEC--CCCCCCCCCCCHHHHHH
Q ss_conf 77899987643589---76999654578706-9999999997698899975--89813255577899999
Q gi|254780709|r 245 ALRQVEMFHAVAGT---TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV--GEGINDLEPFVAKDFSA 308 (321)
Q Consensus 245 ~~~~a~~F~~~~~~---~g~I~TKlD~ta~~-G~~ls~~~~~~~Pi~fig~--Ge~i~Dl~~f~~~~~~~ 308 (321)
..+.. +.+.++- .=+|++|.|=..+. +.-+ ...-+.|+..++. ||.+++|+..--..|-.
T Consensus 312 ~~d~~--~~~~~~~~~~~i~v~NK~DL~~~~~~~~~--~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 312 KEDLA--LIELLPKKKPIIVVLNKADLVSKIELESE--KLANGDAIISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred HHHHH--HHHHCCCCCCEEEEEECHHCCCCCCCCHH--HCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 01177--88724368977999960211564321012--02678826999825765799999999999863
No 273
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.87 E-value=0.0028 Score=43.37 Aligned_cols=98 Identities=16% Similarity=0.218 Sum_probs=52.8
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 36674123113544444247899999998522674267743451245688999997530353212235866124542289
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
+.++..-|+|+|+.|+||||-+.+|. .+..... +|.++.. +
T Consensus 15 ~~~k~~kIlilGld~aGKTTil~~l~-----~~~~~~~----------------------~PT~Gfn------------~ 55 (190)
T cd00879 15 LYNKEAKILFLGLDNAGKTTLLHMLK-----DDRLAQH----------------------VPTLHPT------------S 55 (190)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHH-----CCCCCEE----------------------CCCCCCC------------E
T ss_conf 65770489999069998899999980-----7995315----------------------2655874------------5
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999651487599865433321157789999899876302223430112310233522577899987643
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~ 255 (321)
+..+.+++++-+.|++|.-.. ..+- +.+.. ..+-+++|+|++--+..-+..+.+++.
T Consensus 56 e~i~~~~~~~~~wDvgG~~~~-R~lW----------~~Y~~-~~~~iIfVVDssD~~r~~eak~~L~~l 112 (190)
T cd00879 56 EELTIGNIKFKTFDLGGHEQA-RRLW----------KDYFP-EVDGIVFLVDAADPERFQESKEELDSL 112 (190)
T ss_pred EEEEECCEEEEEEECCCCCCC-CCCH----------HHHHH-CCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 999989999999989998455-5438----------88843-113799999776778999999999999
No 274
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.86 E-value=0.0049 Score=41.62 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=51.8
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
.++++||.|+||||-..+|.+. ..+ +.+++.. |-. .+.... ...+
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~~~-----~~~-------------------------~T~tS~~---~n~-~~~~~~-~~~~ 46 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTG-----KYR-------------------------STVTSIE---PNV-ATFILN-SEGK 46 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCC-------------------------CCCCCCC---CCC-EEEECC-CCCC
T ss_conf 5999907999899999999749-----988-------------------------8778887---862-066402-4668
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHHHHHHHHHHHC
Q ss_conf 487599865433321157789999899876302223430112310233522-5778999876435
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NALRQVEMFHAVA 256 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~~~a~~F~~~~ 256 (321)
+.-+-++|+.|.-.....+.+. +.. ...-+++|+||.+=+ +.-+.|+..++.+
T Consensus 47 ~~~~~lvD~PGH~klR~~~~~~---~~~--------~~~gIVfvVDs~~~~~~l~~~Ae~Ly~iL 100 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLET---LKN--------SAKGIVFVVDSATFQKNLKDVAEFLYDIL 100 (203)
T ss_pred CCEEEEEECCCCHHHHHHHHHH---HHH--------CCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 7279999879968899999999---875--------49899999968875111999999999998
No 275
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.86 E-value=0.0053 Score=41.40 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=68.6
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245422899
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
+++-.-|+++|+.||||||-+-++. +..+ +++-| -+|..+. .+
T Consensus 11 ~~~~~KililG~~~sGKTsll~~l~------~~~~-----~~~~p-----------T~G~~~~---------~~------ 53 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLL------GEDI-----DTISP-----------TLGFQIK---------TL------ 53 (173)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHC------CCCC-----CCCCC-----------CCCEEEE---------EE------
T ss_conf 4573189999899978899999983------9998-----97267-----------0577789---------99------
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH-HHHHHC------CCC-
Q ss_conf 996514875998654333211577899998998763022234301123102335225778999-876435------897-
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE-MFHAVA------GTT- 259 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~-~F~~~~------~~~- 259 (321)
..+++.+.+-||||+-. +..+-+. +.. ..+-+++|+|++-.+ .++.++ .+++.+ +.-
T Consensus 54 --~~~~~~l~iwD~~G~e~-----~~~~~~~------y~~-~a~~ii~VvD~td~~-~~~~~~~~l~~ll~~~~~~~~pi 118 (173)
T cd04154 54 --EYEGYKLNIWDVGGQKT-----LRPYWRN------YFE-STDALIWVVDSSDRL-RLDDCKRELKELLQEERLAGATL 118 (173)
T ss_pred --EECCEEEEEEECCCCCC-----CCHHHHH------HHC-CCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHHCCCCCE
T ss_conf --98999999996688602-----0058999------722-665389998556578-89999999999986354159847
Q ss_pred EEEEECCCCCCC--H---HHHHHHHHHHCCCEEE--EE--CCCCCCCC
Q ss_conf 699965457870--6---9999999997698899--97--58981325
Q gi|254780709|r 260 GLIMTKMDGTAR--G---GGLIPIVVTHKIPVYF--LG--VGEGINDL 298 (321)
Q Consensus 260 g~I~TKlD~ta~--~---G~~ls~~~~~~~Pi~f--ig--~Ge~i~Dl 298 (321)
=++.+|.|-... . -..+........|..| ++ +||.|+++
T Consensus 119 li~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~gI~e~ 166 (173)
T cd04154 119 LILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHH
T ss_conf 999876567778899999999868744579829999889669298999
No 276
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.86 E-value=0.053 Score=34.37 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=71.9
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 01366741231135444442478999999985226742677434512456889999975303532122358661245422
Q gi|254780709|r 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 (321)
Q Consensus 105 ~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~ 184 (321)
++..+.| .|.++|=.-|||+|-+=.|. .+ ++++++ .++ ||-. | .+.++.
T Consensus 13 ~p~~~~p-~IaivGrpNvGKSTL~N~L~----g~-k~~a~v-s~~--pGtT--------r-~i~~~~------------- 61 (179)
T TIGR03598 13 LPPDDGP-EIAFAGRSNVGKSSLINALT----NR-KKLART-SKT--PGRT--------Q-LINFFE------------- 61 (179)
T ss_pred CCCCCCC-EEEEECCCCCCHHHHHHHHH----CC-CCEEEE-CCC--CCEE--------E-ECCEEE-------------
T ss_conf 9998897-89998699988899999986----89-855897-089--9736--------6-023201-------------
Q ss_pred HHHHHHHHCCCEEEEECCCC-----CCCHHHHHHH-HHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHC
Q ss_conf 89999651487599865433-----3211577899-998998763022234301123102335225--778999876435
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTAGR-----LHNNSILMAG-IGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVA 256 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTAGR-----~~~~~~lm~E-L~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~ 256 (321)
-+.++++|||+|- .......+.+ +.+...... .-+.++||+||..|-. -.+.++...+.-
T Consensus 62 -------~~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~villiDa~~gl~~~D~~i~~~l~~~~ 129 (179)
T TIGR03598 62 -------VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRGRE-----NLKGVVLLMDIRHPLKELDLEMLEWLDERG 129 (179)
T ss_pred -------ECCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHH-----HHHCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf -------04736999777602112788889999999999999988-----643028987437799899999999999759
Q ss_pred CCCEEEEECCCCCCCHHH---HHHHHHHH-----CCCEEEEEC--CCCCC
Q ss_conf 897699965457870699---99999997-----698899975--89813
Q gi|254780709|r 257 GTTGLIMTKMDGTARGGG---LIPIVVTH-----KIPVYFLGV--GEGIN 296 (321)
Q Consensus 257 ~~~g~I~TKlD~ta~~G~---~ls~~~~~-----~~Pi~fig~--Ge~i~ 296 (321)
---=++++|.|--.+... .-.+...+ -.||.||+. |+.+|
T Consensus 130 kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ISA~~g~GID 179 (179)
T TIGR03598 130 IPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQLFSSLKKTGIE 179 (179)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 98899997813069899999999999997336688948999799983879
No 277
>PRK09354 recA recombinase A; Provisional
Probab=96.86 E-value=0.0062 Score=40.91 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=63.1
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321---223586612454228999
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---CSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~---~~~~~~dp~~v~~~a~~~ 188 (321)
+++-+-|+.++||||.+....+..++.|..++++-+-. + + =..|++.+||++= ..++ |...-+++.++.
T Consensus 61 RivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~--a--l--d~~~a~~lGVd~d~llv~qp--d~~Eqal~i~e~ 132 (350)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH--A--L--DPVYAKKLGVDIDNLLVSQP--DTGEQALEIADA 132 (350)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC--C--C--CHHHHHHCCCCHHHEEEECC--CHHHHHHHHHHH
T ss_conf 08999889877799999999999997599479996000--2--7--98899984977157178568--679999999999
Q ss_pred HH-HHCCCEEEEECCCCCCCHHHH
Q ss_conf 96-514875998654333211577
Q gi|254780709|r 189 AQ-AKKVDVLIIDTAGRLHNNSIL 211 (321)
Q Consensus 189 a~-~~~~DvvliDTAGR~~~~~~l 211 (321)
.. ....|+|+||.-+-+....++
T Consensus 133 Lvrsg~vd~IVvDSVaAL~pk~Ei 156 (350)
T PRK09354 133 LVRSGAVDLIVVDSVAALVPKAEI 156 (350)
T ss_pred HHHCCCCCEEEEECCCCCCCHHHH
T ss_conf 985488418998253345768887
No 278
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.85 E-value=0.022 Score=37.04 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=53.4
Q ss_pred CCCEEEEECCC---CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHH-HHH---------
Q ss_conf 48759986543---3321157789999899876302223430112310233522-----57789998-764---------
Q gi|254780709|r 193 KVDVLIIDTAG---RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEM-FHA--------- 254 (321)
Q Consensus 193 ~~DvvliDTAG---R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~-F~~--------- 254 (321)
+..++++||+| |.|.+.+++.+.- +.+. ..+-+++|+|+.-.. +.++..+. ..+
T Consensus 43 ~~~i~~~DtpGi~~~~~~~~~~~~~~l---~~~~-----~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~ 114 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFL---AHIR-----RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETI 114 (176)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHH---HHHH-----CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 966999957875457337878999999---8741-----08899999989876554544589999999999997115665
Q ss_pred -----HCCCCEEEEECCCCCCCHHHHH----HHHHHHCCCEEEEEC--CCCCCCCC
Q ss_conf -----3589769996545787069999----999997698899975--89813255
Q gi|254780709|r 255 -----VAGTTGLIMTKMDGTARGGGLI----PIVVTHKIPVYFLGV--GEGINDLE 299 (321)
Q Consensus 255 -----~~~~~g~I~TKlD~ta~~G~~l----s~~~~~~~Pi~fig~--Ge~i~Dl~ 299 (321)
..| .=++++|.|--.+-...- ......+.|+.+++. |+.++.|.
T Consensus 115 ~~~~~~kp-~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iSA~~~~gi~~L~ 169 (176)
T cd01881 115 LGLLTAKP-VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELI 169 (176)
T ss_pred HHHHCCCC-EEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 55432697-19999686034700315999999974689958999777887999999
No 279
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=96.84 E-value=0.055 Score=34.28 Aligned_cols=146 Identities=20% Similarity=0.274 Sum_probs=82.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH-HHHH
Q ss_conf 231135444442478999999985226742677434512456889999975303532122358661245422899-9965
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK-QAQA 191 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~-~a~~ 191 (321)
+|.+||-+-|||.|-.-+| . |++-++|. +.-||.- | -+. .+.-
T Consensus 281 ~VAIVGRPNVGKSTLFNRL----~--g~r~AIV~----------------d~pGvTR-------D-------R~~~~~~~ 324 (714)
T PRK09518 281 TVAIVGRPNVGKSTLVNRI----L--GRREAVVE----------------DTPGVTR-------D-------RVSYDAEW 324 (714)
T ss_pred EEEEECCCCCCHHHHHHHH----H--CCCEEEEC----------------CCCCCCC-------C-------CCEEEEEE
T ss_conf 7999899987689999886----2--88416846----------------9899883-------7-------55579999
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH--HHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 1487599865433321157789999899876302223430112310233522577--89998764358976999654578
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL--RQVEMFHAVAGTTGLIMTKMDGT 269 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~--~~a~~F~~~~~~~g~I~TKlD~t 269 (321)
.+....||||+|=......+..++.. -+.... ...+-++||+|+..|-... ..|+...+.=.-.=+++.|.|+.
T Consensus 325 ~~~~F~lvDTGG~~~~~~~~~~~I~~---Q~~~Ai-~eADlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~ 400 (714)
T PRK09518 325 AGRDFKLVDTGGWEADAEGIEAAIAS---QAEIAM-TLADAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQ 400 (714)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHH---HHHHHH-HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99169999799999883269999999---999999-96899999996897989789999999985699889999897887
Q ss_pred CCHHHHHHHHHHHCCC-EEEEEC--CCCCCCCC
Q ss_conf 7069999999997698-899975--89813255
Q gi|254780709|r 270 ARGGGLIPIVVTHKIP-VYFLGV--GEGINDLE 299 (321)
Q Consensus 270 a~~G~~ls~~~~~~~P-i~fig~--Ge~i~Dl~ 299 (321)
..- ....-.|.+|.. +.+|+. |..++||.
T Consensus 401 ~~e-~~~~ef~~LG~~e~~~ISA~Hg~G~~dLl 432 (714)
T PRK09518 401 ASE-YDVAEFWKLGLGEPYSISAMHGRGVADLL 432 (714)
T ss_pred CCH-HHHHHHHHCCCCCCEEEECCCCCCHHHHH
T ss_conf 640-12999996599996898473578989999
No 280
>KOG1051 consensus
Probab=96.84 E-value=0.024 Score=36.82 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH--
Q ss_conf 674123113544444247899999998522674267743451245688999997530353212235866124542289--
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF-- 186 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~-- 186 (321)
+++.-+||.||.|+|||--+-.||.++. |-...+|..|- ..|.+ +..-.+++|--+.+.+.
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDm---------se~~e------vskligsp~gyvG~e~gg~ 651 (898)
T KOG1051 589 NPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDM---------SEFQE------VSKLIGSPPGYVGKEEGGQ 651 (898)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHC--CCCCCEEEECH---------HHHHH------HHHCCCCCCCCCCCHHHHH
T ss_conf 8885899978884138999999999972--88642689614---------55555------6530489955546305778
Q ss_pred -HHH-HHHCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHCCCCC-CCCEEEEECCCCCCHHHH
Q ss_conf -999-6514875998654333211-57789999899876302223-430112310233522577
Q gi|254780709|r 187 -KQA-QAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNAL 246 (321)
Q Consensus 187 -~~a-~~~~~DvvliDTAGR~~~~-~~lm~EL~ki~~v~~~~~~~-~p~~~~lVlda~~gq~~~ 246 (321)
.++ +.+-|-|||+|-----|-+ .+.|.++-.=-|+....... .---+++||-+..|++.+
T Consensus 652 LteavrrrP~sVvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i 715 (898)
T KOG1051 652 LTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAI 715 (898)
T ss_pred HHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCHHHH
T ss_conf 8899716996599983022228889999999986274005888675046459999426316666
No 281
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=96.82 E-value=0.0012 Score=45.82 Aligned_cols=180 Identities=19% Similarity=0.229 Sum_probs=91.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC---C-------------------
Q ss_conf 231135444442478999999985226742677434512456889999975303532---1-------------------
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF---V------------------- 170 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~---~------------------- 170 (321)
++.-.|--|||||||.|-|+.-+.+.|+||.+|-.|. -|+.+--.+|.+- |
T Consensus 5 IVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di-------GLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkD 77 (272)
T COG2894 5 IVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI-------GLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKD 77 (272)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCC-------CCHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHCC
T ss_conf 9994488876743106778999997398599996676-------720446664342015654013444766365676403
Q ss_pred ---------CCCCCCCCHHHH----HHHHHHHHHHCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf ---------223586612454----22899996514875998654-3332115778999989987630222343011231
Q gi|254780709|r 171 ---------CSEIGSDAAALA----YEAFKQAQAKKVDVLIIDTA-GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 (321)
Q Consensus 171 ---------~~~~~~dp~~v~----~~a~~~a~~~~~DvvliDTA-GR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lV 236 (321)
+.....|--++- ..-++..+..+||+||||.. |=-+--.+-|. ..++-+.|
T Consensus 78 Kr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~~---------------~Ad~AiVV 142 (272)
T COG2894 78 KRLENLFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAVY---------------FADEAIVV 142 (272)
T ss_pred CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH---------------CCCEEEEE
T ss_conf 567852661443236722279999999999997669988996484067788886541---------------02637997
Q ss_pred CCCCC--CHHHHHH-----HHHHHHHCC---CCEEEEECCCC-CCCHHHHHHH---HHHHCCCEEEE-----------EC
Q ss_conf 02335--2257789-----998764358---97699965457-8706999999---99976988999-----------75
Q gi|254780709|r 237 LDATT--GQNALRQ-----VEMFHAVAG---TTGLIMTKMDG-TARGGGLIPI---VVTHKIPVYFL-----------GV 291 (321)
Q Consensus 237 lda~~--gq~~~~~-----a~~F~~~~~---~~g~I~TKlD~-ta~~G~~ls~---~~~~~~Pi~fi-----------g~ 291 (321)
..--. =.|+-++ ++.+....+ --.+|+|+++- -.+-|.+||+ ...+.+|+.=| -.
T Consensus 143 tnPEvSsVRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liGiiPed~~Vi~asN~ 222 (272)
T COG2894 143 TNPEVSSVRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQDVLRASNK 222 (272)
T ss_pred CCCCCCCCCCCHHHEEEHHCCCCHHHCCCCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHCCCEEEEECCCHHHEEECCC
T ss_conf 48875542341122020121454233077666348997168888115772539999997477447760485333000478
Q ss_pred CCCCCCCCCC----CHHHHHHHHCCCC
Q ss_conf 8981325557----7899999872865
Q gi|254780709|r 292 GEGINDLEPF----VAKDFSAVITGCL 314 (321)
Q Consensus 292 Ge~i~Dl~~f----~~~~~~~~llG~g 314 (321)
||-+---... .....++||+|..
T Consensus 223 GePv~l~~~~~a~~Ay~d~arRllGe~ 249 (272)
T COG2894 223 GEPVILDDNSDAGKAYRDIARRLLGEE 249 (272)
T ss_pred CCCEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 887675787517799999999970888
No 282
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=96.81 E-value=0.035 Score=35.64 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=77.5
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 67412311354444424789999999852267426774345124568899999753035321223586612454228999
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~ 188 (321)
..|.-|.+||=.-|||.|-+=+|. .+.+. ++ ++.-|. -.||..+.+
T Consensus 450 ~~~~rIAIIGRPNVGKSTLiN~Ll----geeR~--IV----------------s~iaGT-------TRDsId~~~----- 495 (714)
T PRK09518 450 SGLRRVALVGRPNVGKSSLLNQLT----REERA--VV----------------NDLAGT-------TRDPVDEIV----- 495 (714)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH----CCCEE--EE----------------CCCCCC-------EECEEEEEE-----
T ss_conf 677358886699887899999996----89758--85----------------688985-------023055679-----
Q ss_pred HHHHCCCEEEEECCC---CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHCCCCEEEE
Q ss_conf 965148759986543---33211577899998998763022234301123102335225--7789998764358976999
Q gi|254780709|r 189 AQAKKVDVLIIDTAG---RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVAGTTGLIM 263 (321)
Q Consensus 189 a~~~~~DvvliDTAG---R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~~~~g~I~ 263 (321)
.-++..+.|||||| |.+.+... |--...|.++... ..+-++||+||+.|-. -..++..-.+.=---=+++
T Consensus 496 -~~~g~~~~lIDTAGiRkk~k~~~~i--E~~S~~rt~~aI~--~adVvllviDA~~git~QD~~Ia~~i~~~gk~~Iivv 570 (714)
T PRK09518 496 -NIDGKDWLFVDTAGIRRKQKKLTGA--EYYASLRTQAAIE--RCELALILFDASQPISEQDLRVMSMAVDAGRALVLAF 570 (714)
T ss_pred -EECCEEEEEEECHHCCCCCCCCCCC--CHHHHHHHHHHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf -9999789999860015244325432--2799999999886--5889999986776752899999999998599379999
Q ss_pred ECCCCCCCHH-HHHH------HHHHHCCCEEEEEC--CCCCCCCCCC
Q ss_conf 6545787069-9999------99997698899975--8981325557
Q gi|254780709|r 264 TKMDGTARGG-GLIP------IVVTHKIPVYFLGV--GEGINDLEPF 301 (321)
Q Consensus 264 TKlD~ta~~G-~~ls------~~~~~~~Pi~fig~--Ge~i~Dl~~f 301 (321)
.|.|--.+-- ..+. .......|+.|++. |++++.|.+.
T Consensus 571 NKWDLv~~~~~~~~~~~i~~~l~~~~~apiv~iSA~~g~~v~kl~~~ 617 (714)
T PRK09518 571 NKWDLMDEFRRQRLEREIDTEFDRVMWAERVNISAKTGRHTNRLARA 617 (714)
T ss_pred ECHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 61430686689999999997563689998899966789788999999
No 283
>KOG2004 consensus
Probab=96.81 E-value=0.058 Score=34.09 Aligned_cols=100 Identities=24% Similarity=0.281 Sum_probs=53.1
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE----------ECCCCCH---HH-HHHHHHHHHHHCC-----
Q ss_conf 366741231135444442478999999985226742677----------4345124---56-8899999753035-----
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA----------AGDTFRS---AA-IDQLKIWADRTSA----- 167 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lv----------a~DtfR~---aA-~eQL~~~a~~~~v----- 167 (321)
.+-+-.|++|+||.|||||.-.--+|.-+-++=.+.-+. -.-||=. |- ++-||.-+-..-+
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDE 513 (906)
T KOG2004 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDE 513 (906)
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEEH
T ss_conf 66788379986899877321899999984874699853663427764254211001488489999986177886588532
Q ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHC---------C---CEEEEECCCCCC
Q ss_conf -32122358661245422899996514---------8---759986543332
Q gi|254780709|r 168 -DFVCSEIGSDAAALAYEAFKQAQAKK---------V---DVLIIDTAGRLH 206 (321)
Q Consensus 168 -~~~~~~~~~dp~~v~~~a~~~a~~~~---------~---DvvliDTAGR~~ 206 (321)
+=++.....||+|-.-+-++--++.+ + -|++|=||-+..
T Consensus 514 vDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id 565 (906)
T KOG2004 514 VDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID 565 (906)
T ss_pred HHHHCCCCCCCHHHHHHHHCCHHHCCCHHHHCCCCCCCHHHEEEEEECCCCC
T ss_conf 2341788779868999874396535534542026642111068898536445
No 284
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=96.80 E-value=0.0028 Score=43.36 Aligned_cols=139 Identities=22% Similarity=0.301 Sum_probs=68.4
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245422899
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
.+++.-++++|..||||||-+-++. . +.-.-.. | -+|..+. .+
T Consensus 11 ~~k~~Ki~llG~~~vGKTsll~~~~----~-~~~~~~~------p-----------Tig~~~~---------~v------ 53 (174)
T pfam00025 11 LNKEMRILILGLDNAGKTTILYKLK----L-GEIVTTI------P-----------TIGFNVE---------TV------ 53 (174)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHH----C-CCCCCCC------C-----------CCCCEEE---------EE------
T ss_conf 8966699999999998899999995----4-9988744------7-----------4682389---------99------
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH-HHHHHC------CCCE
Q ss_conf 996514875998654333211577899998998763022234301123102335225778999-876435------8976
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE-MFHAVA------GTTG 260 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~-~F~~~~------~~~g 260 (321)
..+++.+.+.||||.-.. +.+. +.+.. ..+-.++|.|++..+ .++.++ .+++.+ ++.-
T Consensus 54 --~~~~~~~~iwDt~Gqe~~-----~~~~------~~y~~-~a~~ii~V~D~t~~~-s~~~~~~~l~~~l~~~~~~~~pi 118 (174)
T pfam00025 54 --TYKNVKFTVWDVGGQESL-----RPLW------RNYFP-NTDAVIFVVDSADRD-RIEEAKEELHALLNEEELADAPL 118 (174)
T ss_pred --EECCEEEEEEECCCCCCC-----CHHH------HHHHC-CCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHCCCCCEE
T ss_conf --989999999827987023-----2679------98841-782689998678678-79999999999875423589708
Q ss_pred -EEEECCCCC-CCH----HHHHHHHHHHCCCEEEEE----CCCCCCCC
Q ss_conf -999654578-706----999999999769889997----58981325
Q gi|254780709|r 261 -LIMTKMDGT-ARG----GGLIPIVVTHKIPVYFLG----VGEGINDL 298 (321)
Q Consensus 261 -~I~TKlD~t-a~~----G~~ls~~~~~~~Pi~fig----~Ge~i~Dl 298 (321)
++.+|.|-. +.- -..+..-...+.++.|+. +||+|+++
T Consensus 119 liv~NK~DL~~~~~~~ei~~~~~~~~~~~~~~~~~~~SAktG~gI~e~ 166 (174)
T pfam00025 119 LILANKQDLPGAMSEAEIRELLGLHELKSRPWEIQGCSAVTGEGLDEG 166 (174)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHH
T ss_conf 998725667678999999999978644179968999988679598999
No 285
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.79 E-value=0.0063 Score=40.87 Aligned_cols=53 Identities=28% Similarity=0.334 Sum_probs=28.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~ 163 (321)
-.++.++|+||+||||.+--+-+...........-.....+...++|++.+.+
T Consensus 21 Ge~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLID 73 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHHHHHH
T ss_conf 98999999999989999998887610311203210137553688577999997
No 286
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.79 E-value=0.01 Score=39.34 Aligned_cols=38 Identities=34% Similarity=0.535 Sum_probs=30.2
Q ss_pred EEECCCC-CCCCHHHHHHHHHHHHHHC-CCCEEEEECCCC
Q ss_conf 2311354-4444247899999998522-674267743451
Q gi|254780709|r 113 VILVVGV-NGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTF 150 (321)
Q Consensus 113 vil~vG~-nG~GKTTT~aKLA~~~~~~-g~kV~lva~Dtf 150 (321)
||.|+|. -|+||||.+.-||+.+.++ +++|+++-.|..
T Consensus 1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlq 40 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ 40 (106)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9899728998668999999999999841993899965467
No 287
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.77 E-value=0.0075 Score=40.32 Aligned_cols=142 Identities=20% Similarity=0.173 Sum_probs=77.7
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHH---CCCCEE--EEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 311354444424789999999852---267426--774345124568899999753035321223586612454228999
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSD---AGLKVM--LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~---~g~kV~--lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~ 188 (321)
|.++|--|+||||-+-.|-+.-.. .|+ |- --.+|. -..||-+ ++.+.. + +-.
T Consensus 2 iai~gH~~~GKTtL~e~lL~~~g~i~r~G~-v~~g~t~~D~---~~eE~~r------~isi~~--------~-----~~~ 58 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGS-VDKGTTRTDT---MELERQR------GITIFS--------A-----VAS 58 (237)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCHHHHCCC-EECCCCCCCC---HHHHHHH------CCEEEE--------E-----EEE
T ss_conf 899938998999999999996571222663-3068303785---4998984------870310--------5-----899
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHHHCCCCEEEE
Q ss_conf 9651487599865433321157789999899876302223430112310233522-----57789998764358976999
Q gi|254780709|r 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEMFHAVAGTTGLIM 263 (321)
Q Consensus 189 a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~F~~~~~~~g~I~ 263 (321)
+.-+++-+-||||.|- .+-..|...-.++ -+-.++|+||..|- ...++++.++ +| .=+.+
T Consensus 59 ~~~~~~~~n~iDtPG~----~dF~~e~~~al~~--------~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~--~P-~iifi 123 (237)
T cd04168 59 FQWEDTKVNLIDTPGH----MDFIAEVERSLSV--------LDGAILVISAVEGVQAQTRILWRLLRKLN--IP-TIIFV 123 (237)
T ss_pred EEECCEEEEEEECCCC----HHHHHHHHHHHHH--------CCCEEEEEECCCCCCCCHHHHHHHHHHCC--CC-EEEEE
T ss_conf 9989987999889884----6566689889763--------48169999658882234499999999859--98-59986
Q ss_pred ECCCC-CCCHH-HHHHHHHHHCCCEEEEECCC
Q ss_conf 65457-87069-99999999769889997589
Q gi|254780709|r 264 TKMDG-TARGG-GLIPIVVTHKIPVYFLGVGE 293 (321)
Q Consensus 264 TKlD~-ta~~G-~~ls~~~~~~~Pi~fig~Ge 293 (321)
.|||- .+..- .+-++...++..+..+....
T Consensus 124 NKmDre~adf~~~l~~i~~~l~~~~~p~~~p~ 155 (237)
T cd04168 124 NKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred ECCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 24457899999999999999789747677775
No 288
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=96.77 E-value=0.0047 Score=41.76 Aligned_cols=59 Identities=31% Similarity=0.329 Sum_probs=42.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
.+++.|+|+|||.+.+.++.++...++++++++ -|- +-+.+|.+..
T Consensus 21 ~~i~~pTGsGKT~~~~~~i~~~~~~~~~~lvlv---p~~---~L~~Q~~~~~---------------------------- 66 (103)
T pfam04851 21 GLIVMATGSGKTLTAAKLIARLLKGKKKVLFLV---PRK---DLLEQALEEF---------------------------- 66 (103)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE---CCH---HHHHHHHHHH----------------------------
T ss_conf 699958999879999999999984699299990---829---9999999965----------------------------
Q ss_pred CCEEEEECCCCCCCH
Q ss_conf 875998654333211
Q gi|254780709|r 194 VDVLIIDTAGRLHNN 208 (321)
Q Consensus 194 ~DvvliDTAGR~~~~ 208 (321)
+|++|=+=|..-+
T Consensus 67 --lii~DE~H~~~a~ 79 (103)
T pfam04851 67 --VIIIDEAHHSSAK 79 (103)
T ss_pred --HHHHHHHHHCCCH
T ss_conf --6460163523537
No 289
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=96.75 E-value=0.0013 Score=45.59 Aligned_cols=119 Identities=22% Similarity=0.315 Sum_probs=70.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH---HHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2311354444424789999999852267426774345124568899999---7530353212235866124542289999
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW---ADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~---a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
|+-++|+-+|||||-+.+|+..|+.+|.+|+.| |.. +....++. .|+|. ..+
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~I-------------KH~ghG~H~~~~d~----~GkDs-------~rh- 55 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKARGYRVATI-------------KHDGHGHHDFDIDK----EGKDS-------YRH- 55 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEE-------------EECCCCCCCCEECC----CCCCC-------HHH-
T ss_conf 937896258867899999999997079950898-------------60898887565279----98731-------332-
Q ss_pred HHHCCCEEEEECCCCCCCHHHHH-HHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 65148759986543332115778-99998998763022234301123102335225778999876435897699965457
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~~~lm-~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ 268 (321)
..-|.|.++|=+.-|+-.=..+- .|=..+..++++..+.. .+.+| ++-|+ ..++..+++-+-+.
T Consensus 56 r~AGA~~v~~~~~~~~~~~~~~~g~~e~~L~~~l~~~~~~~-~D~~L-------------vEGfK-~~~~pKi~~~r~~~ 120 (165)
T TIGR00176 56 REAGADAVIVASSERYAVMTETQGEEELDLEALLKRLADRE-LDIIL-------------VEGFK-DSPLPKIVVIRNEA 120 (165)
T ss_pred HHCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHCCCCC-CCEEE-------------EECCC-CCCCCEEEEEECCC
T ss_conf 10436278866790689987528999878799986428552-68789-------------85245-57887489972675
Q ss_pred CCC
Q ss_conf 870
Q gi|254780709|r 269 TAR 271 (321)
Q Consensus 269 ta~ 271 (321)
..+
T Consensus 121 ~~~ 123 (165)
T TIGR00176 121 EEK 123 (165)
T ss_pred CCC
T ss_conf 566
No 290
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.74 E-value=0.0035 Score=42.67 Aligned_cols=134 Identities=19% Similarity=0.251 Sum_probs=68.9
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
-|+|+|..||||||-+-++- .|... ..+|.++. +... ...+
T Consensus 2 KililG~~~sGKTsll~~l~-----~~~~~----------------------~~~pT~g~----~~~~--------~~~~ 42 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLK-----LGEIV----------------------TTIPTIGF----NVET--------VEYK 42 (159)
T ss_pred EEEEECCCCCCHHHHHHHHH-----CCCCC----------------------CCCCCCCC----CEEE--------EEEC
T ss_conf 99999999999899999997-----29967----------------------75896870----1799--------9989
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---CC----EEEEEC
Q ss_conf 48759986543332115778999989987630222343011231023352257789998764358---97----699965
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG---TT----GLIMTK 265 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~---~~----g~I~TK 265 (321)
++.+.+-||+|.-... .+.+.+.. ..+-+++|+|++--+.--+..+.|++.+. +. =++..|
T Consensus 43 ~~~l~iwD~~G~~~~r-----------~l~~~Y~~-~a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK 110 (159)
T cd04150 43 NISFTVWDVGGQDKIR-----------PLWRHYFQ-NTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANK 110 (159)
T ss_pred CEEEEEEECCCCCCCC-----------HHHHHHCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEC
T ss_conf 8999999789972146-----------56786476-87389999977777899999999999962353369829999975
Q ss_pred CCC-CCCHH----HHHHHHHHHCCCEEEEE----CCCCCCC
Q ss_conf 457-87069----99999999769889997----5898132
Q gi|254780709|r 266 MDG-TARGG----GLIPIVVTHKIPVYFLG----VGEGIND 297 (321)
Q Consensus 266 lD~-ta~~G----~~ls~~~~~~~Pi~fig----~Ge~i~D 297 (321)
.|- .+..- ..+..-..-+.|..+.. +||.|++
T Consensus 111 ~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~Gv~e 151 (159)
T cd04150 111 QDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred CCCCCCCCHHHHHHHHCHHHHHCCCEEEEEEECCCCCCHHH
T ss_conf 66778989999999968666637985999826867939899
No 291
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=96.74 E-value=0.013 Score=38.55 Aligned_cols=82 Identities=28% Similarity=0.377 Sum_probs=40.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHH-HHHCCCCE-----EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 412311354444424789999999-85226742-----677434512456889999975303532122358661245422
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKV-----MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~-~~~~g~kV-----~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~ 184 (321)
|.=|++=||.|||||| +|.||-- -|+...++ -+|--|- --||.==+-+.-|+.++-+ ||. |+
T Consensus 176 PQHiiLYGPPGVGKTT-aARl~LEe~K~~~~tPF~~DA~FvEVDG------tTLRWDPREvTNPLLGSVH--DPI---YQ 243 (616)
T TIGR02903 176 PQHIILYGPPGVGKTT-AARLALEEAKKLKNTPFAEDAPFVEVDG------TTLRWDPREVTNPLLGSVH--DPI---YQ 243 (616)
T ss_pred CCCEEEECCCCCCHHH-HHHHHHHHCCCCCCCCCCCCCCEEEECC------CCCCCCCCCCCCCCCCCCC--CCC---CC
T ss_conf 6607855733884789-9999876213687447611378575157------6266774101477677625--765---56
Q ss_pred HHHH--HH-------------HHCCCEEEEECCCCC
Q ss_conf 8999--96-------------514875998654333
Q gi|254780709|r 185 AFKQ--AQ-------------AKKVDVLIIDTAGRL 205 (321)
Q Consensus 185 a~~~--a~-------------~~~~DvvliDTAGR~ 205 (321)
+-.. |. ++| -|++||=-|=|
T Consensus 244 Ga~RDLAE~GvPEPk~GLVT~AHG-GvLFIDEIGEL 278 (616)
T TIGR02903 244 GARRDLAETGVPEPKLGLVTDAHG-GVLFIDEIGEL 278 (616)
T ss_pred CCCHHHCCCCCCCCCCCCCCCCCC-CEEEEECHHHH
T ss_conf 764011047879898987100477-56765021122
No 292
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=96.74 E-value=0.0063 Score=40.87 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=52.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
.|+++||.|+||||-..+|.. |+.+- .+.+.. |. +.. .+...+
T Consensus 5 tvLllGl~~sGKT~Lf~~L~~-----~~~~~-------------------------T~tS~~---~n-~~~---~~~~~~ 47 (181)
T pfam09439 5 AVIIAGLCDSGKTSLFTLLTT-----GSVRK-------------------------TVTSQE---PS-AAY---KYMNNK 47 (181)
T ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCC-------------------------EECCCC---CC-CEE---EEECCC
T ss_conf 699986899989999999975-----99487-------------------------588867---86-406---875168
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHHHHHHHHHHHC
Q ss_conf 487599865433321157789999899876302223430112310233522-5778999876435
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NALRQVEMFHAVA 256 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~~~a~~F~~~~ 256 (321)
+..+-+||+.|.-.....+++.+... ..-.-+++|+|+.+-+ +..+.|+..++.+
T Consensus 48 ~~~~~lvD~PGh~klR~~~~~~~~~~---------~~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL 103 (181)
T pfam09439 48 GNSLTLIDFPGHVKLRYKLLETLKDS---------SSLRGLVFVVDSTAFPKEVTDTAEFLYDIL 103 (181)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHH---------CCCEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 96689998899689999999864300---------264499999978665667999999999998
No 293
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.72 E-value=0.0054 Score=41.30 Aligned_cols=47 Identities=28% Similarity=0.515 Sum_probs=35.5
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHH
Q ss_conf 2311354444424789999999852267426774--3451245688999997
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA--GDTFRSAAIDQLKIWA 162 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva--~DtfR~aA~eQL~~~a 162 (321)
.|.|-|+-||||||-+.+|+.++..+|.+|.+.. .+| -.-+.++.+.
T Consensus 5 fIviEGiDGsGKsTq~~~L~~~L~~~g~~v~~t~eP~~t---~~g~~ir~~~ 53 (204)
T PRK00698 5 FITIEGIDGAGKSTQIELLAERLEEQGRDVVFTREPGGT---PLGEKLRELL 53 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC---CHHHHHHHHH
T ss_conf 999988999989999999999999679978998699998---0699999998
No 294
>KOG0926 consensus
Probab=96.70 E-value=0.014 Score=38.43 Aligned_cols=129 Identities=23% Similarity=0.297 Sum_probs=82.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHH--HH-HCCCCE-EEEECCCCCHHHHHHHHHHHHHHCC-C--C-C----CCCCCCCCHH
Q ss_conf 2311354444424789999999--85-226742-6774345124568899999753035-3--2-1----2235866124
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKK--MS-DAGLKV-MLAAGDTFRSAAIDQLKIWADRTSA-D--F-V----CSEIGSDAAA 180 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~--~~-~~g~kV-~lva~DtfR~aA~eQL~~~a~~~~v-~--~-~----~~~~~~dp~~ 180 (321)
|+.++|-+||||||-+--.-+- |. .+--+. ++.-+-.-|.||+---+-.|.-+++ + | | -+..+.| .+
T Consensus 273 vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~e~-T~ 351 (1172)
T KOG0926 273 VVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIGED-TS 351 (1172)
T ss_pred EEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC-CE
T ss_conf 49995488888644341899871347766799870540572278999999999998525764114899853656887-40
Q ss_pred HHH--------HHHHHHHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCC---CEEEEECCCCCC
Q ss_conf 542--------28999965148759986543-332115778999989987630222343---011231023352
Q gi|254780709|r 181 LAY--------EAFKQAQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAP---HSVLQVLDATTG 242 (321)
Q Consensus 181 v~~--------~a~~~a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p---~~~~lVlda~~g 242 (321)
|-| +-..-+....|.+||||-|- |+-|-.-|+.=|..|.+.-.+...... -..+..++||..
T Consensus 352 IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926 352 IKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred EEEECCHHHHHHHHHHHHHHHCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE
T ss_conf 47740238899988767554201578512543031278999999887788899766413567616999741477
No 295
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.70 E-value=0.0052 Score=41.46 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=76.2
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3113544444247899999998522674267-743451245688999997530353212235866124542289999651
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~l-va~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
+.++|--++||||-+..|-+.-..-...-.. -..|+.. .|| + -|+.+- ..++.+.+ ...+.+
T Consensus 3 iaiiGHvd~GKTTL~~~ll~~tg~i~~~~~~~~~~D~~~---~E~-----e-RgiTi~-----~~~~~~~~---~~~~~~ 65 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMD---LER-----E-RGITIK-----AQTVRLNY---KAKDGQ 65 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCH---HHH-----H-CCCEEE-----EEEEEEEE---ECCCCC
T ss_conf 999948998989999999998599541457324416517---678-----6-386687-----43368884---136787
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-----HHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 4875998654333211577899998998763022234301123102335225-----77899987643589769996545
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN-----ALRQVEMFHAVAGTTGLIMTKMD 267 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~-----~~~~a~~F~~~~~~~g~I~TKlD 267 (321)
.|-+-+|||.|. -| ...|... .+. .-+-.+||+||..|-. ....+..++ +++ =++++|+|
T Consensus 66 ~~~in~iDtPGh--~d--F~~~~~~---al~-----~~D~allVVda~~Gv~~qT~~~~~~a~~~~--~p~-ivviNKiD 130 (179)
T cd01890 66 EYLLNLIDTPGH--VD--FSYEVSR---SLA-----ACEGALLLVDATQGVEAQTLANFYLALENN--LEI-IPVINKID 130 (179)
T ss_pred CEEEEEEECCCC--CC--CHHHHHH---HHH-----HHCEEEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCC
T ss_conf 148999989986--45--1778988---997-----544278998647787374899999998769--988-99986555
Q ss_pred C-CCCHHHHHHHH-HHHCC---CEEEEEC--CCCCCCCC
Q ss_conf 7-87069999999-99769---8899975--89813255
Q gi|254780709|r 268 G-TARGGGLIPIV-VTHKI---PVYFLGV--GEGINDLE 299 (321)
Q Consensus 268 ~-ta~~G~~ls~~-~~~~~---Pi~fig~--Ge~i~Dl~ 299 (321)
- .+..-.++.-. ..+++ |+.+++. |++++||.
T Consensus 131 ~~~ad~~~v~~~i~~~~g~~~~~~v~vSA~~g~gv~~Ll 169 (179)
T cd01890 131 LPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLL 169 (179)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf 677899999999999868897674884378897989999
No 296
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=96.66 E-value=0.027 Score=36.45 Aligned_cols=159 Identities=20% Similarity=0.323 Sum_probs=107.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-------HHHHHHHH
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661-------24542289
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA-------AALAYEAF 186 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp-------~~v~~~a~ 186 (321)
|-+.||-|+|||.-+-+|...+.+ .+.+++++-|.|----.+-|-...-...-.+++.+.|.-| +++-..|+
T Consensus 4 iG~~GPvG~Gktal~e~l~~~~~~-~y~~av~tndiyt~eda~fl~~~~~l~~~ri~GvetGGCPhtairedas~nl~a~ 82 (199)
T TIGR00101 4 IGVAGPVGSGKTALIEALTRELAK-KYDLAVITNDIYTQEDAEFLVKNSVLPPERILGVETGGCPHTAIREDASLNLEAV 82 (199)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 665047776468999999998874-0667787311001246888876412662226774158987300100021218899
Q ss_pred HHHHHH--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HCCCCEEEE
Q ss_conf 999651--48759986543332115778999989987630222343011231023352257789998764-358976999
Q gi|254780709|r 187 KQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA-VAGTTGLIM 263 (321)
Q Consensus 187 ~~a~~~--~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~-~~~~~g~I~ 263 (321)
+....+ ..|+++|..-|- || ...+.|.-.+-+++|+|...|...-+. -.. ...-+=+++
T Consensus 83 ~~~~~rf~~~~~~~~esGGd-----nl----------~atf~P~l~d~t~~vidva~G~kiPrk---GGPGit~sdllvi 144 (199)
T TIGR00101 83 EELEARFPDLELVFIESGGD-----NL----------SATFSPELADLTIFVIDVAEGDKIPRK---GGPGITRSDLLVI 144 (199)
T ss_pred HHHHHCCCCEEEEEEECCCC-----CC----------EEECCCCEEEEEEEEEEECCCCCCCCC---CCCCCCCHHEEEE
T ss_conf 98862156404899832886-----20----------000276402367889972058745677---8898530012243
Q ss_pred ECCCCCCCHHHHHHHHH------HHCCCEEEEEC
Q ss_conf 65457870699999999------97698899975
Q gi|254780709|r 264 TKMDGTARGGGLIPIVV------THKIPVYFLGV 291 (321)
Q Consensus 264 TKlD~ta~~G~~ls~~~------~~~~Pi~fig~ 291 (321)
.|.|=..-.|+-|++.. +...|..|.-.
T Consensus 145 nk~dlaP~vGadl~~m~rd~~~mr~~~Pf~ftn~ 178 (199)
T TIGR00101 145 NKIDLAPFVGADLKVMERDAKKMRGEKPFIFTNL 178 (199)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHH
T ss_conf 2001253112303544356786406997466400
No 297
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0026 Score=43.55 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=35.3
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 12311354444424789999999852267426774345124568899999753035
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
..+.++|+||+||||.+-=|+-.++-..-+|.+-..+......-..++.+..++|+
T Consensus 33 e~vaiiG~nGsGKSTLl~~l~Gll~p~~G~V~~~~~~i~~~~~~~~~~~~~~~vG~ 88 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGV 88 (288)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCEEE
T ss_conf 89999999994799999999748888885699999985687735447987751799
No 298
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.65 E-value=0.015 Score=38.14 Aligned_cols=135 Identities=8% Similarity=0.110 Sum_probs=71.3
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
..+.+.|+.|+|||.=+-=+|+.+...++++..+++..+.---.+-++. .
T Consensus 39 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~~~l~~------------------------------l 88 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEG------------------------------L 88 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHH------------------------------C
T ss_conf 8699989999988999999999986269957995299987753999972------------------------------7
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-----HHHHHHHHCCCCEEEEECC
Q ss_conf 14875998654333211577899998998763022234301123102335225778-----9998764358976999654
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR-----QVEMFHAVAGTTGLIMTKM 266 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~-----~a~~F~~~~~~~g~I~TKl 266 (321)
+++|+++||-.-++..+...-.+|=.+.+.+. . ....+++.|...-...+ -.-.|.. .--+=+-..
T Consensus 89 ~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~---~---~~~~ilits~~~p~~l~~~l~dL~SRl~~---~~~~~I~~p 159 (226)
T TIGR03420 89 EQADLVCLDDVEAIAGQPEWQEALFHLYNRVR---E---AGGRLLIAGRAAPAQLPLRLPDLRTRLAW---GLVFQLPPL 159 (226)
T ss_pred CCCCEEEEECHHHHCCCHHHHHHHHHHHHHHH---H---HCCEEEEECCCCHHHCCCCHHHHHHHHHC---CCEEECCCC
T ss_conf 44899999663334378378999999999998---6---52828986788823203201779999968---856852799
Q ss_pred CCCCCHHHHHHHHHHHCCC
Q ss_conf 5787069999999997698
Q gi|254780709|r 267 DGTARGGGLIPIVVTHKIP 285 (321)
Q Consensus 267 D~ta~~G~~ls~~~~~~~P 285 (321)
|...+-.++...+..-++.
T Consensus 160 dd~~~~~iL~k~~~~r~i~ 178 (226)
T TIGR03420 160 SDEEKIAALQSRAARRGLQ 178 (226)
T ss_pred CHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999985998
No 299
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.65 E-value=0.0077 Score=40.23 Aligned_cols=139 Identities=21% Similarity=0.136 Sum_probs=74.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCC--CE--EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 311354444424789999999852267--42--67743451245688999997530353212235866124542289999
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGL--KV--MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~--kV--~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
|.++|-.|+||||-+=.|.+.-..-++ +| .--.+|.- ..|+- =++.+.. + +-.+
T Consensus 2 iai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~---~eE~~------R~isi~~--------~-----~~~~ 59 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFM---EQERE------RGITIQS--------A-----ATTC 59 (270)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCC---HHHHH------CCCEEEC--------C-----EEEE
T ss_conf 89996899998899999998668735581553897556684---88987------6870733--------6-----6899
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-----HHHHHHHHHHHCCCCEEEEE
Q ss_conf 6514875998654333211577899998998763022234301123102335225-----77899987643589769996
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN-----ALRQVEMFHAVAGTTGLIMT 264 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~-----~~~~a~~F~~~~~~~g~I~T 264 (321)
.-+++-+-||||.|- .+-..|...-.++ -+-.++|+||..|-. ..++++.++ +| .=+.++
T Consensus 60 ~w~~~~inliDTPG~----~DF~~e~~~aL~~--------~D~AviVv~a~~GVe~~T~~~w~~~~~~~--lP-~i~fIN 124 (270)
T cd01886 60 FWKDHRINIIDTPGH----VDFTIEVERSLRV--------LDGAVAVFDAVAGVEPQTETVWRQADRYN--VP-RIAFVN 124 (270)
T ss_pred EECCEEEEEEECCCC----HHHHHHHHHHHHH--------HCEEEEEEECCCCHHHHHHHHHHHHHHCC--CC-EEEEEE
T ss_conf 989989999869696----7889999999877--------55599998467644263699998899849--99-899998
Q ss_pred CCCC-CCCHH-HHHHHHHHHCCCEEEE
Q ss_conf 5457-87069-9999999976988999
Q gi|254780709|r 265 KMDG-TARGG-GLIPIVVTHKIPVYFL 289 (321)
Q Consensus 265 KlD~-ta~~G-~~ls~~~~~~~Pi~fi 289 (321)
|||- .+..- .+-++...++.++.-+
T Consensus 125 KmDre~ad~~~~l~~i~~~lg~~~vp~ 151 (270)
T cd01886 125 KMDRTGADFFRVVEQIREKLGANPVPL 151 (270)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 878778871668999999858973889
No 300
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=96.64 E-value=0.011 Score=39.22 Aligned_cols=137 Identities=19% Similarity=0.262 Sum_probs=69.7
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245422899
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
.++-.-|+++|+.||||||-+.+|. .+...-- +|.++. +...+
T Consensus 6 ~kk~~kililG~~~sGKTsil~~l~-----~~~~~~~----------------------~pTvg~----~~~~~------ 48 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLK-----LGQSVTT----------------------IPTVGF----NVETV------ 48 (168)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHH-----CCCCCCC----------------------CCCCCC----EEEEE------
T ss_conf 7888899999999999899999996-----6998760----------------------262670----07999------
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCC---CC----
Q ss_conf 99651487599865433321157789999899876302223430112310233522577899-98764358---97----
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAG---TT---- 259 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~~---~~---- 259 (321)
..+++.+.+-||+|.-... .+. +.+.. ..+-+++|+|++-.+ .+..+ +.|++.+. +.
T Consensus 49 --~~~~~~l~iwD~~Gqe~~r-~l~----------~~y~~-~~~~iifVvDstd~~-~~~~~~~~l~~~l~~~~~~~~pi 113 (168)
T cd04149 49 --TYKNVKFNVWDVGGQDKIR-PLW----------RHYYT-GTQGLIFVVDSADRD-RIDEARQELHRIINDREMRDALL 113 (168)
T ss_pred --EECCEEEEEEECCCCCCCC-CHH----------HHHCC-CCCEEEEEEECCCHH-HHHHHHHHHHHHHHCHHHCCCEE
T ss_conf --9898899999899997466-065----------76437-886689998377678-99999999999971452279869
Q ss_pred EEEEECCCCC-CCH----HHHHHHHHHHCCCEEEEE----CCCCCC
Q ss_conf 6999654578-706----999999999769889997----589813
Q gi|254780709|r 260 GLIMTKMDGT-ARG----GGLIPIVVTHKIPVYFLG----VGEGIN 296 (321)
Q Consensus 260 g~I~TKlD~t-a~~----G~~ls~~~~~~~Pi~fig----~Ge~i~ 296 (321)
=++..|.|-. +.. -..+......+.|..++. +||.|+
T Consensus 114 lI~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~Gv~ 159 (168)
T cd04149 114 LVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEEECCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCCCCCHH
T ss_conf 9999756677788999999997876551798099980687896979
No 301
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=96.64 E-value=0.0019 Score=44.52 Aligned_cols=35 Identities=34% Similarity=0.571 Sum_probs=30.5
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCC
Q ss_conf 113544444247899999998522--67426774345
Q gi|254780709|r 115 LVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDT 149 (321)
Q Consensus 115 l~vG~nG~GKTTT~aKLA~~~~~~--g~kV~lva~Dt 149 (321)
+|-|==||||||..|=.|-|+..+ ||||+||++|-
T Consensus 1 f~gGKGGVGKTt~SaAtA~~lAe~qPGkkvLl~STDP 37 (330)
T TIGR00345 1 FFGGKGGVGKTTISAATAIRLAEQQPGKKVLLVSTDP 37 (330)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9778788238889999999998518997799984086
No 302
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=96.63 E-value=0.001 Score=46.39 Aligned_cols=45 Identities=29% Similarity=0.325 Sum_probs=35.0
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 741231135444442478999999985226742677434512456
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA 154 (321)
+-.|+-|.||||+||||||-=|+-.++=.+=+.-+.--|.-|=++
T Consensus 20 ~G~vfGfLGPNGAGKTTti~mLtTll~P~sG~A~V~GYDvvreP~ 64 (343)
T TIGR01188 20 EGEVFGFLGPNGAGKTTTIRMLTTLLKPTSGTARVAGYDVVREPR 64 (343)
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCHH
T ss_conf 624899768799851335634102557998768998321023630
No 303
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.63 E-value=0.017 Score=37.80 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=32.1
Q ss_pred EECCCCCCCCHHHHHHHHHHH-HHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 311354444424789999999-852-26742677434512456889999975303
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKK-MSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~-~~~-~g~kV~lva~DtfR~aA~eQL~~~a~~~~ 166 (321)
+++++|+|+|||++..-.+.. +.. +++++++ -+.| |+-+.+|.+.+....+
T Consensus 3 ~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~li-l~Pt-~~L~~q~~~~~~~~~~ 55 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLV-LAPT-RELANQVAERLKELFG 55 (144)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCH-HHHHHHHHHHHHHHCC
T ss_conf 999889971799999999999997568976999-7467-9999999999999748
No 304
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=96.61 E-value=0.015 Score=38.12 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=66.4
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|+++|..||||||-+-++... ... .+ - --+|+.+. .+ .-++
T Consensus 2 i~ilG~~~vGKTsll~~l~~~----~~~------~~-~-----------pTig~~~~---------~i--------~~~~ 42 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG----EVV------TT-I-----------PTIGFNVE---------TV--------EYKN 42 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCC----CCC------CC-C-----------CEECCCEE---------EE--------EECC
T ss_conf 999999999889999999539----988------74-4-----------56074089---------99--------8488
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH-HHHHHC---C---CC-EEEEEC
Q ss_conf 875998654333211577899998998763022234301123102335225778999-876435---8---97-699965
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE-MFHAVA---G---TT-GLIMTK 265 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~-~F~~~~---~---~~-g~I~TK 265 (321)
+.+.+.||+|.-. ++.+.+. +. ...+-+++|.|++-- +.++.++ .+++.+ . +- =++.+|
T Consensus 43 ~~l~iwDt~G~~~-----~~~~~~~------y~-~~a~~~i~V~D~t~~-~s~~~~~~~~~~~~~~~~~~~~piliv~NK 109 (158)
T cd00878 43 VSFTVWDVGGQDK-----IRPLWKH------YY-ENTNGIIFVVDSSDR-ERIEEAKEELHKLLNEEELKGVPLLIFANK 109 (158)
T ss_pred EEEEEEECCCCCC-----CCHHHHH------HH-CCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 9999998899722-----1448998------72-768776899837988-899999999999986605576538987605
Q ss_pred CCCCC-----CHHHHHHHHHHHCCCEEEEE----CCCCCCCC
Q ss_conf 45787-----06999999999769889997----58981325
Q gi|254780709|r 266 MDGTA-----RGGGLIPIVVTHKIPVYFLG----VGEGINDL 298 (321)
Q Consensus 266 lD~ta-----~~G~~ls~~~~~~~Pi~fig----~Ge~i~Dl 298 (321)
.|-.. ..-..+..-...+.|+.|+. +||+|++.
T Consensus 110 ~Dl~~~~~~~ei~~~l~~~~~~~~~~~~~~~SAktg~gI~e~ 151 (158)
T cd00878 110 QDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
T ss_conf 476657899999999858751079989999988879298999
No 305
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.016 Score=38.06 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=68.1
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC-CCCC---CCHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122-3586---6124542
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGS---DAAALAY 183 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~-~~~~---dp~~v~~ 183 (321)
..-|+-++|.||.|+||+|++-.+|..+..++.. +..++ .+...--+++.. +.+. .....+.
T Consensus 16 ~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p-----~~~~~---------i~~~~HPD~~~i~pe~k~~~~~Id~iR 81 (290)
T PRK05917 16 QKVPSAILLHGQDLSNLSQYAYELASLILLESSP-----EAQYK---------ISQKIHPDIHEFFPEGKGRLHSIETPR 81 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-----CHHHH---------HHHCCCCCEEEECCCCCCCCCCHHHHH
T ss_conf 9966068768999865999999999998578996-----16889---------874689985996157778878678999
Q ss_pred HHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2899996----51487599865433321157789999899876302223430112310233522577899987643589
Q gi|254780709|r 184 EAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 (321)
Q Consensus 184 ~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~ 258 (321)
+-..... ..++-|++||-|-||..... +-| =|..+..|..+++.+=++.-+.....+..=++.+.+
T Consensus 82 ~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~Aa--NAL-------LKtLEEPP~~tvfILit~~~~~lLpTI~SRCQ~I~i 151 (290)
T PRK05917 82 AIKKQIWIHPYEANYKIYIIHEADRMTLDAI--SAF-------LKVLEDPPKHSVIILTSAKPQRLPPTIRSRSLSIHI 151 (290)
T ss_pred HHHHHHCCCCCCCCCEEEEECCHHHHCHHHH--HHH-------HHHHCCCCCCEEEEEEECCHHHCCHHHHHCCCEEEC
T ss_conf 9999964186468826999756776389999--999-------997347987859999869925482377633511677
No 306
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=96.59 E-value=0.01 Score=39.44 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=71.0
Q ss_pred CCCCCE-EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC--CCC-------
Q ss_conf 667412-3113544444247899999998522674267743451245688999997530353212235--866-------
Q gi|254780709|r 108 SHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--GSD------- 177 (321)
Q Consensus 108 ~~~p~v-il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~--~~d------- 177 (321)
..+|++ |.++|=--+||||.++-|.+... .......++++..++..|-+-+.-.. ...
T Consensus 3 ~~K~~l~i~~~GhVD~GKSTL~G~Ll~~~g------------~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rG 70 (426)
T PRK12317 3 KEKPHLNLAVIGHVDHGKSTLVGRLLYETG------------AVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERG 70 (426)
T ss_pred CCCCEEEEEEEEECCCCHHHHHHHHHHHCC------------CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCC
T ss_conf 989784999995228768888768987729------------94489999999899864877521432125786687558
Q ss_pred -CHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC--CHH--HHHHHHHH
Q ss_conf -1245422899996514875998654333211577899998998763022234301123102335--225--77899987
Q gi|254780709|r 178 -AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT--GQN--ALRQVEMF 252 (321)
Q Consensus 178 -p~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~--gq~--~~~~a~~F 252 (321)
...+++ .++...++.+.+||++|.-..=.|++.- ...+|-.+||+||.- |-. -.+.+..
T Consensus 71 iTid~~~---~~f~~~~~~~~iiD~PGH~~fi~nmi~G------------as~~D~ailvV~A~~~~G~~~QT~eHl~l- 134 (426)
T PRK12317 71 VTIDLAH---KKFETDKYYFTIIDCPGHRDFVKNMITG------------ASQADAAVLVVSARDAGGVMPQTREHVFL- 134 (426)
T ss_pred CEEEEEE---EEEECCCCEEEEEECCCCHHHHHHHHHH------------HCCCCEEEEEEECCCCCCCCHHHHHHHHH-
T ss_conf 2788316---9995498169998789636678778745------------34677279999636566764778999999-
Q ss_pred HHHCCCCEE--EEECCCCC
Q ss_conf 643589769--99654578
Q gi|254780709|r 253 HAVAGTTGL--IMTKMDGT 269 (321)
Q Consensus 253 ~~~~~~~g~--I~TKlD~t 269 (321)
...+++..+ .+||||-.
T Consensus 135 ~~~lgi~~iiV~vnKmD~v 153 (426)
T PRK12317 135 ARTLGINQLIVAINKMDAV 153 (426)
T ss_pred HHHHCCCEEEEEEECCCCC
T ss_conf 9980998399999533356
No 307
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.57 E-value=0.0036 Score=42.56 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=38.2
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 412311354444424789999999852267426774345124568899999753035
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
-..+.++|+||+||||.+-=|+-.++-..-+|.+-..|...-.--..++.+..++|+
T Consensus 33 Ge~~aiiG~nGsGKSTLl~~l~GLl~p~~G~I~~~g~~i~~~~~~~~~~~~r~~ig~ 89 (286)
T PRK13646 33 GKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGM 89 (286)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCEEE
T ss_conf 989999999998199999999707888887599998987555746789998740899
No 308
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.57 E-value=0.0081 Score=40.09 Aligned_cols=139 Identities=17% Similarity=0.246 Sum_probs=69.6
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245422899
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
.++-.-|+++|+.||||||-+-++. . |.-. ..+|.++. +...
T Consensus 14 ~kk~~kililGl~~sGKTsil~~l~----~-~~~~----------------------~~~pTvg~----~~~~------- 55 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLK----L-GEVV----------------------TTIPTIGF----NVET------- 55 (182)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHH----C-CCCC----------------------CCCCCCCC----CEEE-------
T ss_conf 7874799999679988999999996----2-9977----------------------73786884----5699-------
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHC---CCCE---
Q ss_conf 99651487599865433321157789999899876302223430112310233522577899-9876435---8976---
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVA---GTTG--- 260 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~---~~~g--- 260 (321)
...+++.+.+-||||.-.. ..+ .+.+.. ..+-+++|+|++--+ .++.+ ..+++.+ .+.+
T Consensus 56 -~~~~~~~l~iwD~~Gqe~~-r~l----------w~~yy~-~~~giI~VvD~sd~~-~~~~~~~~l~~~l~~~~~~~~pi 121 (182)
T PTZ00133 56 -VEYKNLKFTMWDVGGQDKL-RPL----------WRHYYQ-NTNGIIFVVDSNDRE-RIGDARQELEKMLAEDELRNAVL 121 (182)
T ss_pred -EEECCEEEEEEECCCCCCC-CHH----------HHHCCC-CCCEEEEEEECCCHH-HHHHHHHHHHHHHCCHHHCCCEE
T ss_conf -9978889999989998454-747----------876056-764499999667878-99999999999971442248859
Q ss_pred -EEEECCCCCC-CH-H---HHHHHHHHHCCCEEEEE----CCCCCCCC
Q ss_conf -9996545787-06-9---99999999769889997----58981325
Q gi|254780709|r 261 -LIMTKMDGTA-RG-G---GLIPIVVTHKIPVYFLG----VGEGINDL 298 (321)
Q Consensus 261 -~I~TKlD~ta-~~-G---~~ls~~~~~~~Pi~fig----~Ge~i~Dl 298 (321)
++..|.|-.. .. . ..+.+....+.+..|.. +||.|++.
T Consensus 122 Li~~NK~Dl~~a~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~Gi~e~ 169 (182)
T PTZ00133 122 LVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EEEECCCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 999706687788899999999695556159958998257589498999
No 309
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=96.57 E-value=0.0086 Score=39.90 Aligned_cols=147 Identities=18% Similarity=0.252 Sum_probs=75.2
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|+|+|+.||||||-+.+|. ... |.. -+|.++.+. ..+ ..++
T Consensus 2 IlilGl~~sGKTtil~~l~----~~~----------~~~-------------~~pT~G~~~----~~i--------~~~~ 42 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLK----QDE----------FMQ-------------PIPTIGFNV----ETV--------EYKN 42 (169)
T ss_pred EEEECCCCCCHHHHHHHHH----CCC----------CCC-------------CCCCCCCCE----EEE--------EECC
T ss_conf 9999989998899999995----799----------689-------------778688166----999--------9898
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH-HHHHHC---CCCE----EEEEC
Q ss_conf 875998654333211577899998998763022234301123102335225778999-876435---8976----99965
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE-MFHAVA---GTTG----LIMTK 265 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~-~F~~~~---~~~g----~I~TK 265 (321)
+.+.+-||+|+-.. ..+ .+.+.. ..+-+++|+|++- .+.++.++ .+++.+ .+.+ ++..|
T Consensus 43 ~~l~iwD~gG~~~~-r~~----------w~~Yy~-~~~~iIfVvDssd-~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK 109 (169)
T cd04158 43 LKFTIWDVGGKHKL-RPL----------WKHYYL-NTQAVVFVVDSSH-RDRVSEAHSELAKLLTEKELRDALLLIFANK 109 (169)
T ss_pred EEEEEEECCCCCCC-CHH----------HHHHCC-CCCEEEEEEECCH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 89999989997244-636----------787555-7627999998630-6779999999999971275379849999735
Q ss_pred CCCC-C----CHHHHHHHHHH-HCCCEEEEE----CCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 4578-7----06999999999-769889997----58981325557789999987286564
Q gi|254780709|r 266 MDGT-A----RGGGLIPIVVT-HKIPVYFLG----VGEGINDLEPFVAKDFSAVITGCLDY 316 (321)
Q Consensus 266 lD~t-a----~~G~~ls~~~~-~~~Pi~fig----~Ge~i~Dl~~f~~~~~~~~llG~gd~ 316 (321)
-|-. + ..-..+++... .+.|..+.. +|+.+++. -+++++.|+..|-+
T Consensus 110 ~Dl~~~~~~~ei~~~l~l~~~~~~~~~~i~~~SA~tG~Gi~e~----~~WL~~~ii~~~~~ 166 (169)
T cd04158 110 QDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG----LDWLSRQLVAAGVL 166 (169)
T ss_pred CCCCCCCCHHHHHHHHCCHHHCCCCCEEEEEEECCCCCCHHHH----HHHHHHHHHHCCCC
T ss_conf 5677798999999985705452699629995557279598999----99999999865786
No 310
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=96.57 E-value=0.016 Score=38.05 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=72.9
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHH----C--CCCEEEEECCCCCHHHHHHHHHHHHH---HCCCCCCCCCCC
Q ss_conf 13667412311354444424789999999852----2--67426774345124568899999753---035321223586
Q gi|254780709|r 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD----A--GLKVMLAAGDTFRSAAIDQLKIWADR---TSADFVCSEIGS 176 (321)
Q Consensus 106 ~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~----~--g~kV~lva~DtfR~aA~eQL~~~a~~---~~v~~~~~~~~~ 176 (321)
+...++--+|+||..|.|||+-+-|.+..+-. . ...|+.+-+ +..-++-+-|+.+ +++|+ ....
T Consensus 56 P~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~----P~~p~~~~lY~~IL~~l~aP~---~~~~ 128 (302)
T pfam05621 56 PNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQM----PSEPSVIRFYVALLAAMGAPL---RPRP 128 (302)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC----CCCCCHHHHHHHHHHHHCCCC---CCCC
T ss_conf 864688755887079887899999999967998786667021899976----999886899999999837877---8887
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEC-----CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6124542289999651487599865-----433321157789999899876
Q gi|254780709|r 177 DAAALAYEAFKQAQAKKVDVLIIDT-----AGRLHNNSILMAGIGKMIRVL 222 (321)
Q Consensus 177 dp~~v~~~a~~~a~~~~~DvvliDT-----AGR~~~~~~lm~EL~ki~~v~ 222 (321)
..++....++...+.-+.-+++||- +|........|+-|+-+.+.+
T Consensus 129 ~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel 179 (302)
T pfam05621 129 RLPEMEQLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNEL 179 (302)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 789999999999997498789985436560486889999999999986365
No 311
>PRK05595 replicative DNA helicase; Provisional
Probab=96.56 E-value=0.085 Score=32.94 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=72.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEE--------------------CCCCCHHH-----HHHHHHHHHH
Q ss_conf 41231135444442478999999985-2267426774--------------------34512456-----8899999753
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAA--------------------GDTFRSAA-----IDQLKIWADR 164 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~kV~lva--------------------~DtfR~aA-----~eQL~~~a~~ 164 (321)
-..|.+.|-+|+|||+.+--+|.+.. ++|++|++.+ ....|-|- .+++...+..
T Consensus 201 GdLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEMs~~ql~~R~ls~~s~i~~~~i~~g~l~~~~~~~~~~a~~~ 280 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGP 280 (444)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 77799985798980799999999999866993799958899999999999964698844232689799999999999999
Q ss_pred H-CCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC---CHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 0-3532122358-6612454228999965148759986543332---1157789999899876302223
Q gi|254780709|r 165 T-SADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPH 228 (321)
Q Consensus 165 ~-~v~~~~~~~~-~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~---~~~~lm~EL~ki~~v~~~~~~~ 228 (321)
+ +.|+|-.... -.+..+...+-...+.++.|+|+||--+-+. ...+.-.|+..|.+-+|.....
T Consensus 281 l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~liiiDYlqLi~~~~~~~~r~~ev~~isr~LK~lAke 349 (444)
T PRK05595 281 LAAAKIYIDDTAGVSVMEMRSKCRRLKIEHGIDLILIDYLQLMSGGKSSESRQQEVSEISRSIKALAKE 349 (444)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 854897054899964899999999999873999899823763578988888999999999999999999
No 312
>PRK13766 Hef nuclease; Provisional
Probab=96.56 E-value=0.083 Score=32.99 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHCCCEEEEEC
Q ss_conf 069999999997698899975
Q gi|254780709|r 271 RGGGLIPIVVTHKIPVYFLGV 291 (321)
Q Consensus 271 ~~G~~ls~~~~~~~Pi~fig~ 291 (321)
=.|++.++...+|+||.|...
T Consensus 646 i~gal~~i~~~~~i~ii~t~~ 666 (764)
T PRK13766 646 IRGALASIAVDFGIPILFTRD 666 (764)
T ss_pred HHHHHHHHHHHCCCCEEECCC
T ss_conf 999999999983997686499
No 313
>PRK01184 hypothetical protein; Provisional
Probab=96.55 E-value=0.021 Score=37.22 Aligned_cols=104 Identities=22% Similarity=0.350 Sum_probs=59.6
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH--------HHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 12311354444424789999999852267426774345124568--------8999997530353212235866124542
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI--------DQLKIWADRTSADFVCSEIGSDAAALAY 183 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~--------eQL~~~a~~~~v~~~~~~~~~dp~~v~~ 183 (321)
.+|.++|..||||+| +++ ++++.|..|. -+.|..|-.+. +.+..++..+ ....|.| .+|.
T Consensus 2 ~iIGlTG~iGSGKst-va~---i~~e~G~~vi-~~~Divr~~v~~~g~~~~~~~~~~~~~~l-----R~~~G~~--~~a~ 69 (183)
T PRK01184 2 MIIIVTGMPGSGKGE-FSK---IARELGIPVV-VMGDVIREEVKKRGLPPTDENIGKVATDL-----RKELGMD--AVAI 69 (183)
T ss_pred EEEEEECCCCCCHHH-HHH---HHHHCCCEEE-ECCHHHHHHHHHCCCCCCHHHHHHHHHHH-----HHHHCCH--HHHH
T ss_conf 399996899887899-999---9997799399-86077899999838999778999999999-----9871955--8999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 2899996514875998654333211577899998998763022234301123102335
Q gi|254780709|r 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 (321)
Q Consensus 184 ~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~ 241 (321)
.++++....+.+.++||-- |+ +.|..-+.+ ..|.-++++++|..
T Consensus 70 ~~~~~i~~~~~~~~vidgi-r~------~~E~~~~~~-------~~~~~~li~V~A~~ 113 (183)
T PRK01184 70 RTVPKIRELGSELVVVDGV-RG------DAEVEYFRK-------EFEDFILVAIHAPP 113 (183)
T ss_pred HHHHHHHHCCCCEEEEECC-CC------HHHHHHHHH-------HCCCEEEEEEECCH
T ss_conf 9999997037982898167-87------899999997-------46984999998988
No 314
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.55 E-value=0.007 Score=40.55 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=51.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH--
Q ss_conf 311354444424789999999852267426774345124568899999753035321223586612454228999965--
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA-- 191 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~-- 191 (321)
|+|+|+.||||+|-+.+||..|. =+-+.+.|.+|..+-.+=..+ +.+.--+-.+. -=|..++.+-+..+-.
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~----~~~is~gdlLR~~~~~~t~~g-~~i~~~~~~G~--lvp~~i~~~l~~~~l~~~ 74 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG----LPHISTGDLLREEIASGTELG-KKAKEYIDSGK--LVPDEIVIKLLKERLKKP 74 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC----CEEECHHHHHHHHHHCCCHHH-HHHHHHHHCCC--CCCHHHHHHHHHHHHHCC
T ss_conf 89989999987999999999979----846768899999997499589-99999998799--778999999999998476
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 148759986543332115778999
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGI 215 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL 215 (321)
....-+++|---|.......++++
T Consensus 75 ~~~~g~ilDGfPR~~~Qa~~l~~~ 98 (194)
T cd01428 75 DCKKGFILDGFPRTVDQAEALDEL 98 (194)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 543877874797989999999999
No 315
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.013 Score=38.54 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=63.7
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245422899
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
..-|+-++|+||.|+||++.+--+|..+.-.+. ..--+|+.-+.- |.-.-+..-++-++.....+-...=+++-.+
T Consensus 25 ~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~-~~~~~Cg~C~~C---~~~~~~~HPD~~~i~p~~~~i~idqiR~L~~ 100 (329)
T PRK08058 25 NRLAHAYLFEGAKGTGKKATALWLAKSLFCLER-NGVEPCGTCTNC---KRIESGNHPDVHLVAPDGQSIKKDQIRYLKE 100 (329)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCHHH---HHHHCCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 996615655789998899999999999739999-999988788899---9987699997677456614077999999999
Q ss_pred HHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 996----514875998654333211577899998998763022234301123102335225778999
Q gi|254780709|r 188 QAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 (321)
Q Consensus 188 ~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~ 250 (321)
.+. ..++-|+|||-|-||..... +-| =|..+..|..+++++=++.-+..+..+.
T Consensus 101 ~~~~~p~~g~~KV~II~~Ae~m~~~Aa--NAL-------LKtLEEPp~~t~fIL~t~~~~~lLpTI~ 158 (329)
T PRK08058 101 EFSKSGVESNKKVYIIEHADKMTASAA--NSL-------LKFLEEPSGDTTAILLTENKHQILPTIL 158 (329)
T ss_pred HHCCCCCCCCCEEEEEECHHHHCHHHH--HHH-------HHHHHCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 964387578867999734776299999--999-------9986468978679987299666436886
No 316
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.55 E-value=0.045 Score=34.84 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=36.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH------HCCCCEEEEECC-CCCHHHHHHHHHHHHHHC
Q ss_conf 41231135444442478999999985------226742677434-512456889999975303
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS------DAGLKVMLAAGD-TFRSAAIDQLKIWADRTS 166 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~------~~g~kV~lva~D-tfR~aA~eQL~~~a~~~~ 166 (321)
-.+..++|+.|+|||+-+-.||.... ..+.+|+.+.+. +|++ +.|..+++..+
T Consensus 19 G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~---~Rl~qia~~~~ 78 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP---ERLVQIAERFG 78 (235)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH---HHHHHHHHHHC
T ss_conf 8799999999984999999999998424753678962999953677588---99999999713
No 317
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=96.54 E-value=0.03 Score=36.09 Aligned_cols=152 Identities=18% Similarity=0.280 Sum_probs=82.4
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245422899
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
..+...|.++|.+-|||.|-+=.|. |.++.+++- +.+.. .|+..-.+
T Consensus 5 ~~ksG~VaivG~PNvGKSTL~N~l~------~~k~siVS~----------------k~~TT-------R~~i~gi~---- 51 (296)
T PRK00089 5 KFKSGFVAIVGRPNVGKSTLLNALV------GQKISIVSP----------------KPQTT-------RHRIRGIV---- 51 (296)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHH------CCCEEEECC----------------CCCCC-------CCCEEEEE----
T ss_conf 9837999999899988899999996------896176149----------------59987-------28389999----
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHCCCCEEEEEC
Q ss_conf 996514875998654333211577899998998763022234301123102335225--778999876435897699965
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVAGTTGLIMTK 265 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~~~~g~I~TK 265 (321)
...+..++++||+|= +...+.+++. ....+.... ...|-+++|+||+.+-. -...++...+.---.=++++|
T Consensus 52 --~~~~~q~i~iDTpGi-~~~~~~l~~~-~~~~~~~ai--~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNK 125 (296)
T PRK00089 52 --TEDDAQIIFVDTPGI-HKPKRALNRA-MNKAAWSSL--KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNK 125 (296)
T ss_pred --EECCEEEEEEECCCC-CCCHHHHHHH-HHHHHHHHH--HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEH
T ss_conf --979979999989986-6746778789-999999999--7599999998578898988999999888749988999547
Q ss_pred CCCCCCHHHHHHHHHHHCC-----CEEEEEC--CCCCCCCC
Q ss_conf 4578706999999999769-----8899975--89813255
Q gi|254780709|r 266 MDGTARGGGLIPIVVTHKI-----PVYFLGV--GEGINDLE 299 (321)
Q Consensus 266 lD~ta~~G~~ls~~~~~~~-----Pi~fig~--Ge~i~Dl~ 299 (321)
.|--.+- .++........ .+.+|+. |+.+++|.
T Consensus 126 iDlv~k~-~l~~~~~~l~~~~~f~~if~iSA~~~~gi~~L~ 165 (296)
T PRK00089 126 IDLVDKE-ELLPLLEELSELMDFAEIVPISALKGDNVDELL 165 (296)
T ss_pred HHHCCHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
T ss_conf 8842898-899999999853797659999677888989999
No 318
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=96.53 E-value=0.024 Score=36.80 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=72.7
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|+++|-.|||||+-+-++.+---... |.+ .++.+++... +.. ....
T Consensus 2 i~vvG~~~vGKTsli~r~~~~~f~~~----------~~~-----------t~~~~~~~~~-------~~~------~~~~ 47 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQNKFPEE----------YIP-----------TIGVDFYTKT-------IEV------DGKT 47 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----------CCC-----------CCEEEEEEEE-------EEE------CCEE
T ss_conf 89999799779999999961999987----------477-----------4135567899-------999------9999
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----HCC--C-CEEEEECC
Q ss_conf 8759986543332115778999989987630222343011231023352257789998764----358--9-76999654
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA----VAG--T-TGLIMTKM 266 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~----~~~--~-~g~I~TKl 266 (321)
+.+.|.||+|.-.. .. +.. ..++ ..+-.++|.|.+. ++.++.++.+.+ ..+ + -=+|-+|.
T Consensus 48 ~~~~i~Dt~G~e~~-~~----~~~--~~~~-----~ad~~iivfd~~~-~~S~~~i~~~~~~i~~~~~~~~piilvgnK~ 114 (162)
T pfam00071 48 VKLQIWDTAGQERF-RA----LRP--LYYR-----GAQGFLLVYDITS-RDSFENVKKWLEEILRHADDNVPIVLVGNKC 114 (162)
T ss_pred EEEEEEECCCCHHH-HH----HHH--HHHC-----CCCCCEEECCCCC-HHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 99999978987204-67----889--9862-----5765504234898-8999999999999998579886288997524
Q ss_pred CC-CCC---HHHHHHHHHHHCCCEEEEEC--CCCCCCC
Q ss_conf 57-870---69999999997698899975--8981325
Q gi|254780709|r 267 DG-TAR---GGGLIPIVVTHKIPVYFLGV--GEGINDL 298 (321)
Q Consensus 267 D~-ta~---~G~~ls~~~~~~~Pi~fig~--Ge~i~Dl 298 (321)
|- ..+ .=-+-..+...+.|...++. |++|+++
T Consensus 115 Dl~~~~~i~~~e~~~~a~~~~~~y~e~Sak~g~gI~~~ 152 (162)
T pfam00071 115 DLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEA 152 (162)
T ss_pred CHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHH
T ss_conf 74651889999999999980997999737888299999
No 319
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.53 E-value=0.079 Score=33.13 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=76.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
.|.++|.+-+||+|-+-.|. |.++.+ + + +|+-. .|+.. .....+
T Consensus 2 ~VaivG~pNvGKStL~N~L~------g~~~~v-~-~--~p~TT--------------------r~~~~------~~~~~~ 45 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT------RAKPEV-A-P--YPFTT--------------------KSLFV------GHFDYK 45 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCCEE-C-C--CCCCC--------------------CCCEE------EEEEEC
T ss_conf 79998899988999999995------898602-3-7--58723--------------------57436------899983
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH-HHHHCCCCCCCCEEEEECCCCCCH--HHHHHHHHHHHHCC-----CCEEEEE
Q ss_conf 487599865433321157789999899-876302223430112310233522--57789998764358-----9769996
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQ--NALRQVEMFHAVAG-----TTGLIMT 264 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~-~v~~~~~~~~p~~~~lVlda~~gq--~~~~~a~~F~~~~~-----~~g~I~T 264 (321)
+..+.++||+|=.+....-+..+.+.. ..+. ...+-+++|+|++... ...++.+.|++.-. --=+++.
T Consensus 46 ~~~~~liDTpGi~~~~~~~~~~ie~~~~~~l~----~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~N 121 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEMQAITALA----HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLN 121 (168)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH----HCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 72768724886556747888899999999998----35776899996887678489999999998776525888799994
Q ss_pred CCCCCCCHH--HHHHHHHHHCCCEEEEEC--CCCCCCCC
Q ss_conf 545787069--999999997698899975--89813255
Q gi|254780709|r 265 KMDGTARGG--GLIPIVVTHKIPVYFLGV--GEGINDLE 299 (321)
Q Consensus 265 KlD~ta~~G--~~ls~~~~~~~Pi~fig~--Ge~i~Dl~ 299 (321)
|.|--..-. .+.......+.|+.+|+. |+.+++|.
T Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~~vi~ISA~~g~Gi~~L~ 160 (168)
T cd01897 122 KIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVK 160 (168)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 753458100799999997089988999815896999999
No 320
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.073 Score=33.38 Aligned_cols=160 Identities=21% Similarity=0.201 Sum_probs=91.9
Q ss_pred EECCCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC---CCCCCCCCH----------
Q ss_conf 31135444442478999999-9852267426774345124568899999753035321---223586612----------
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---CSEIGSDAA---------- 179 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~-~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~---~~~~~~dp~---------- 179 (321)
.|+|=|||-|||+-++=.+. ||...++|+++.|-- +|=..+|-+.+.+.+++|-- .-...-+|.
T Consensus 32 tLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPT--KPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~k 109 (542)
T COG1111 32 TLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPT--KPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKK 109 (542)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHHHHHHHCC
T ss_conf 389952875079999999999987458848996589--517999999999985898433231117778688999875177
Q ss_pred ------HHHHHHHHHHH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf ------45422899996--5148759986543332115778999989987630222343011231023352257789998
Q gi|254780709|r 180 ------ALAYEAFKQAQ--AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 (321)
Q Consensus 180 ------~v~~~a~~~a~--~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~ 251 (321)
.|+.+-+.... ..+++++++|-|-|---|..-. .|.+.+...+.+-.+|-|.|+-|.+--.+.+.
T Consensus 110 VfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv-------~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV 182 (542)
T COG1111 110 VFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYV-------FVAKEYLRSAKNPLILGLTASPGSDLEKIQEV 182 (542)
T ss_pred EEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCCCCCHHH-------HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 89956387776876176676780589862355413760699-------99999998256843798723899987999999
Q ss_pred HHHHCCCCEEEE-ECCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 764358976999-654578706999999999769889997
Q gi|254780709|r 252 FHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 252 F~~~~~~~g~I~-TKlD~ta~~G~~ls~~~~~~~Pi~fig 290 (321)
.+.+++..+++ |--|.+-+ .|..++-+-+|-
T Consensus 183 -~~nLgIe~vevrTE~d~DV~-------~Yv~~~kve~ik 214 (542)
T COG1111 183 -VENLGIEKVEVRTEEDPDVR-------PYVKKIKVEWIK 214 (542)
T ss_pred -HHHCCCCEEEEECCCCCCHH-------HHHCCCEEEEEE
T ss_conf -98379542898457885177-------751404248996
No 321
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0027 Score=43.45 Aligned_cols=63 Identities=25% Similarity=0.311 Sum_probs=45.8
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH------------------------HHHHHHHH--
Q ss_conf 6741231135444442478999999985226742677434512456------------------------88999997--
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA------------------------IDQLKIWA-- 162 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA------------------------~eQL~~~a-- 162 (321)
.++.+|.+.|.-||||||-+-+|...+..+ +|.+++-|.|=-.- .+||+.+-
T Consensus 6 ~~~iiIgIaG~SgSGKTTv~~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCC--CCEEEECCCCCCCHHHCCHHHCCCCCCCCHHHHCHHHHHHHHHHHHCC
T ss_conf 766999986798778899999999982867--524765223202530166755378574482343689999999999769
Q ss_pred HHHCCCCCCCC
Q ss_conf 53035321223
Q gi|254780709|r 163 DRTSADFVCSE 173 (321)
Q Consensus 163 ~~~~v~~~~~~ 173 (321)
..+.+|+|...
T Consensus 84 ~~v~~P~yd~~ 94 (218)
T COG0572 84 KPVDLPVYDYK 94 (218)
T ss_pred CCCCCCCCCHH
T ss_conf 92245642031
No 322
>PRK05439 pantothenate kinase; Provisional
Probab=96.51 E-value=0.018 Score=37.73 Aligned_cols=46 Identities=30% Similarity=0.325 Sum_probs=39.2
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCCC
Q ss_conf 13667412311354444424789999999852--26742677434512
Q gi|254780709|r 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFR 151 (321)
Q Consensus 106 ~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~--~g~kV~lva~DtfR 151 (321)
.....|+||-+.|-=-|||+||+--|...+.+ .+.+|-||++|-|=
T Consensus 81 ~~~~~PfIIGIaGSVAVGKSTtARlLq~LL~r~~~~~~V~LvTTDGFL 128 (312)
T PRK05439 81 NGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVDLVTTDGFL 128 (312)
T ss_pred CCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 988999899976201026288999999999507899945899346655
No 323
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=96.50 E-value=0.054 Score=34.29 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=59.9
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH------HCC--CCCCCCCCCCCHH
Q ss_conf 67412311354444424789999999852267426774345124568899999753------035--3212235866124
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR------TSA--DFVCSEIGSDAAA 180 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~------~~v--~~~~~~~~~dp~~ 180 (321)
+....+++.|+-++|||+-+-+.+..+...+..+. -.|..|....+++..+... ++. +-.......++..
T Consensus 18 ~~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (223)
T pfam01637 18 GTYPIIVVYGPRRCGKTALLREFLEELRELGYRVI--YYDPLRREFEEKLDRFEEAKRLAEALGDALPKIGIAKSKLAFL 95 (223)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE--EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 99718999868878799999999986334685289--9951444379999988888999999876512332221120788
Q ss_pred HHHHHHHHHHHHCCC-EEEEECCCCCC---CHHHHHHHHHHHH
Q ss_conf 542289999651487-59986543332---1157789999899
Q gi|254780709|r 181 LAYEAFKQAQAKKVD-VLIIDTAGRLH---NNSILMAGIGKMI 219 (321)
Q Consensus 181 v~~~a~~~a~~~~~D-vvliDTAGR~~---~~~~lm~EL~ki~ 219 (321)
.+.....+....+.+ +|+||=.-.+- .+..++..|+.+.
T Consensus 96 ~l~~~~~~l~~~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~ 138 (223)
T pfam01637 96 SLTLLFELLKRKGKKIAIIIDEVQYAIGLNGAESYVKLLLNLI 138 (223)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999998559965999701677640244305999999999
No 324
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.50 E-value=0.0033 Score=42.87 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=37.2
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 4123113544444247899999998522674267743451245688999997530353
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~ 168 (321)
-.++.++|+||+||||.+-=|+..++-..-+|.+-.-|...--.-..++.+..++|+-
T Consensus 33 Ge~~~iiG~nGsGKSTLl~~l~Gll~P~sG~V~i~G~~i~~~~~~~~~~~~r~~vg~v 90 (286)
T PRK13641 33 GSFVALIGHTGSGKSTLMQHFNALLKPSSGKITIAGYHITPETSNKNLKDLRKKVGLV 90 (286)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHHEEEE
T ss_conf 9999999999839999999996598988549999989997666555799998515489
No 325
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=96.48 E-value=0.0072 Score=40.44 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=23.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 31135444442478999999985226742677434
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D 148 (321)
+|+.||.|+|||+.+--+|+.+. ..+.-+.+.
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~---~~~~~v~~~ 32 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG---APFIEISGS 32 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHC---CCCEECCCC
T ss_conf 98789999999999999999978---985332420
No 326
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.48 E-value=0.0061 Score=40.97 Aligned_cols=152 Identities=15% Similarity=0.173 Sum_probs=77.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 311354444424789999999852267426774345124568899999753-0353212235866124542289999651
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-TSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~-~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
|.++|=-..||||.+..|.+.+...+.....-. .+.++... |+ -|+.+. .+.+.| ...
T Consensus 5 i~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~------~~~D~~~~--EreRGiTI~-------~~~~~~------~~~ 63 (195)
T cd01884 5 VGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKY------DEIDKAPE--EKARGITIN-------TAHVEY------ETA 63 (195)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC------HHCCCCHH--HHCCCCCCC-------CEEEEE------ECC
T ss_conf 999960588698999999998866344441120------01005466--650588614-------418999------608
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH-HHH--HHCCCCEE-E-EECCC
Q ss_conf 4875998654333211577899998998763022234301123102335225778999-876--43589769-9-96545
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE-MFH--AVAGTTGL-I-MTKMD 267 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~-~F~--~~~~~~g~-I-~TKlD 267 (321)
++.+-+|||.|-- | .+.++. +.+. ..+-.+||+||.-|.. .|.+ .+. ...++.-+ | ++|+|
T Consensus 64 ~~~~~~IDtPGH~--d--F~~~~i---~g~~-----~~D~aiLVVdA~eGv~--~QT~eh~~la~~lgi~~iiV~iNK~D 129 (195)
T cd01884 64 NRHYAHVDCPGHA--D--YIKNMI---TGAA-----QMDGAILVVSATDGPM--PQTREHLLLARQVGVPYIVVFLNKAD 129 (195)
T ss_pred CEEEEECCCCCHH--H--HHHHHH---HHHH-----HCCEEEEEEECCCCCC--HHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8169962689607--7--888998---6351-----1362689985277874--78999999999809996279996877
Q ss_pred CCCCHH-------HHHHHHHHHC-----CCEEEEEC--CCCCCCCCC
Q ss_conf 787069-------9999999976-----98899975--898132555
Q gi|254780709|r 268 GTARGG-------GLIPIVVTHK-----IPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 268 ~ta~~G-------~~ls~~~~~~-----~Pi~fig~--Ge~i~Dl~~ 300 (321)
-...-- -+......++ .|+.|++- |-...|..+
T Consensus 130 ~~~~~~~~~~v~~ei~~~l~~~g~~~~~~p~ip~Sa~~g~~~~~~~~ 176 (195)
T cd01884 130 MVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNK 176 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCCCCCC
T ss_conf 89878999999999999998429995568299977387535788875
No 327
>PRK04040 adenylate kinase; Provisional
Probab=96.48 E-value=0.0074 Score=40.36 Aligned_cols=171 Identities=19% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCHH-------HHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 412311354444424789999999852267426774345-1245-------68899999753035321223586612454
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSA-------AIDQLKIWADRTSADFVCSEIGSDAAALA 182 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt-fR~a-------A~eQL~~~a~~~~v~~~~~~~~~dp~~v~ 182 (321)
+.+++++|+.||||||.+.++...+.. +.++. -.+|. |+.| .-++++. +.++. --.+-
T Consensus 2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~-~~~~v-n~G~~M~e~A~~~glv~~RDemRk----L~~~~--------q~~lQ 67 (189)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKE-DYKIV-NFGDVMLEVAKEEGLVEHRDEMRK----LPLEE--------QKELQ 67 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC-CCEEE-EHHHHHHHHHHHCCCCCCHHHHCC----CCHHH--------HHHHH
T ss_conf 418999758988789999999997235-87598-677999999998177347788747----99999--------99999
Q ss_pred HHHHHHHHH-HCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---CC
Q ss_conf 228999965-148759986543332115778999-9899876302223430112310233522577899987643---58
Q gi|254780709|r 183 YEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGI-GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV---AG 257 (321)
Q Consensus 183 ~~a~~~a~~-~~~DvvliDTAGR~~~~~~lm~EL-~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~---~~ 257 (321)
..|.++-.. .+-..|||||-.=-.+..--+--| ....+.++ |+..+ ++.|.-. ..+..- -++. -+
T Consensus 68 ~~Aa~~I~~~~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L~------P~~iv-lieA~P~-eIl~RR--~~D~tR~RD 137 (189)
T PRK04040 68 REAAERIAEMAGEGPVIVDTHATIKTPGGYLPGLPEWVLEELN------PDVIV-LIEADPD-EILMRR--LRDPTRRRD 137 (189)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCC------CCEEE-EEECCHH-HHHHHH--HCCCCCCCC
T ss_conf 9999999983578728994452002688677899899998669------98899-9975889-999988--425566898
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 9769996545787069999999997698899975898132555778999998728
Q gi|254780709|r 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 (321)
Q Consensus 258 ~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG 312 (321)
+.+.=--+..-...-.++.+-+..+|.|++++-+ +++.++.-+..|..
T Consensus 138 ~es~~~I~~hq~~nR~~a~ayavltga~Vkiv~N-------~e~~~e~Aa~~iv~ 185 (189)
T PRK04040 138 VETEESIEEHQEMNRAAAMAYAVLTGATVKIVEN-------HEGLLEEAAEEIVE 185 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC-------CCCCHHHHHHHHHH
T ss_conf 7889999999999999999999973984899978-------99988999999999
No 328
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=96.47 E-value=0.0038 Score=42.40 Aligned_cols=161 Identities=21% Similarity=0.356 Sum_probs=97.3
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC------------HHHHHHHHHH---HHHHCC----
Q ss_conf 366741231135444442478999999985226742677434512------------4568899999---753035----
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR------------SAAIDQLKIW---ADRTSA---- 167 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR------------~aA~eQL~~~---a~~~~v---- 167 (321)
..++..+|.+-|=-|.||.||.+.+++-+...|+||++|.||--. +--.+.++.- ++.+.+
T Consensus 27 ~~k~~~~IAiYGKGGIGKSTts~NlsAAlA~~GkkVm~IGCDPKaDSTrlLlgG~~~~TVLd~~~~~~~~~e~v~~~dv~ 106 (329)
T cd02033 27 PTKKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVC 106 (329)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHEE
T ss_conf 75445499997688435616889999999977996999788884603341058988840999998728864434250178
Q ss_pred ----CCCCCCCCC-CC--------HHHHHHHHHHHH--HHCCCEEEEECCCC-------CCCHHHHHHHHHHHHHHHHCC
Q ss_conf ----321223586-61--------245422899996--51487599865433-------321157789999899876302
Q gi|254780709|r 168 ----DFVCSEIGS-DA--------AALAYEAFKQAQ--AKKVDVLIIDTAGR-------LHNNSILMAGIGKMIRVLKRL 225 (321)
Q Consensus 168 ----~~~~~~~~~-dp--------~~v~~~a~~~a~--~~~~DvvliDTAGR-------~~~~~~lm~EL~ki~~v~~~~ 225 (321)
.++..+.|. .| .-.+++-++... ..++|+|+.|--|- ++..+
T Consensus 107 ~~g~Gv~CvEsGGPEPGvGCAGRGIItai~lLe~lg~~~~d~D~V~yDVLGDVVCGGFAmPiR~---------------- 170 (329)
T cd02033 107 FKRDGVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDWDFDYVLLDFLGDVVCGGFGLPIAR---------------- 170 (329)
T ss_pred ECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCCCCC----------------
T ss_conf 6259988986679999876788730136678776377525899999922453566463353356----------------
Q ss_pred CCCCCCEEEEECCCCC-----CHHHHHHHHHHHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 2234301123102335-----22577899987643---589769996545787069999999997698899
Q gi|254780709|r 226 DPHAPHSVLQVLDATT-----GQNALRQVEMFHAV---AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 (321)
Q Consensus 226 ~~~~p~~~~lVlda~~-----gq~~~~~a~~F~~~---~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~f 288 (321)
..-++++.|.+.-. -+|...-++.|.+. +.+.|+|..+-|++. -+=..+...+.|+..
T Consensus 171 --g~A~evyIVtSgE~MalyAANNI~~~i~~~a~~gg~vrl~GlI~N~~~~~~---e~e~fa~~~g~~~l~ 236 (329)
T cd02033 171 --DMAQKVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG---EAQAFAAHAGIPILA 236 (329)
T ss_pred --CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCH---HHHHHHHHCCCCEEE
T ss_conf --876289999678088999887899999999863897101159860688724---999999971995799
No 329
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.46 E-value=0.0099 Score=39.47 Aligned_cols=47 Identities=28% Similarity=0.485 Sum_probs=39.4
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHH
Q ss_conf 667412311354444424789999999852-26742677434512456
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAA 154 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~-~g~kV~lva~DtfR~aA 154 (321)
+.+-.+|.|.|+.||||||-+--|...+.. .|+.|.+.-.|..|.+=
T Consensus 389 ~~~G~tiwlTGLsgsGKsTiA~al~~~L~~~~~~~v~lLDGD~~R~~l 436 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMAKLMEMRGRPVTLLDGDVVRKHL 436 (568)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 458649998457888776999999999997189279995468887421
No 330
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.46 E-value=0.022 Score=37.05 Aligned_cols=126 Identities=17% Similarity=0.282 Sum_probs=67.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 31135444442478999999985226742-67743451245688999997530353212235866124542289999651
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV-~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
|+++|+.|+||||-+.+|.. +..+ .. +|.++. +...+ ..+
T Consensus 2 IlilGLd~aGKTTil~~l~~-----~~~~~~~----------------------~PT~Gf----~~~~i--------~~~ 42 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS-----ERSLESV----------------------VPTTGF----NSVAI--------PTQ 42 (164)
T ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCCCC----------------------CCCCCC----CEEEE--------EEC
T ss_conf 99996799989999999816-----9987653----------------------563277----46999--------989
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCCCEEEEECCCCCCC
Q ss_conf 487599865433321157789999899876302223430112310233522577899-9876435897699965457870
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTAR 271 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~~~~g~I~TKlD~ta~ 271 (321)
++.+.+.|++|.- +++..-+.+.. ..+-+++|+|++-- +-++.+ +.+++.+. .
T Consensus 43 ~~~l~~wDlgGq~-----------~~R~~W~~Y~~-~~~gIIfVVDssD~-~rl~eak~~L~~ll~----------~--- 96 (164)
T cd04162 43 DAIMELLEIGGSQ-----------NLRKYWKRYLS-GSQGLIFVVDSADS-ERLPLARQELHQLLQ----------H--- 96 (164)
T ss_pred CEEEEEEECCCHH-----------HHHHHHHHHHH-CCCEEEEEEECCCH-HHHHHHHHHHHHHHH----------C---
T ss_conf 9999998537528-----------88656998711-77589999956888-899999999999970----------8---
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCC-CCCHHHHHHHHCCCCCCC
Q ss_conf 6999999999769889997589813255-577899999872865646
Q gi|254780709|r 272 GGGLIPIVVTHKIPVYFLGVGEGINDLE-PFVAKDFSAVITGCLDYG 317 (321)
Q Consensus 272 ~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~-~f~~~~~~~~llG~gd~~ 317 (321)
..++|+..++.=| |+. ...+.++ ...||+.++.
T Consensus 97 ---------~~~~PlLIlaNKq---Dl~~a~s~~ei-~~~L~L~~i~ 130 (164)
T cd04162 97 ---------PPDLPLVVLANKQ---DLPAARSVQEI-HKELELEPIA 130 (164)
T ss_pred ---------CCCCEEEEEEECC---CCCCCCCHHHH-HHHCCCCCCC
T ss_conf ---------7998699998632---43369999999-9866994637
No 331
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.45 E-value=0.098 Score=32.48 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=52.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCCCHHHHHHH--HHHHHHHCCCCCCCCCCC---CCHHHHHH
Q ss_conf 4123113544444247899999998-52267426774345124568899--999753035321223586---61245422
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQL--KIWADRTSADFVCSEIGS---DAAALAYE 184 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~-~~~g~kV~lva~DtfR~aA~eQL--~~~a~~~~v~~~~~~~~~---dp~~v~~~ 184 (321)
-..+.+.|-+|+|||+.+--+|... .++|+.|++.+..-= .+|| |..|...+|+.-.-..+. +...-+..
T Consensus 194 g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs----~eql~~R~la~~s~i~~~~i~~g~l~~~~~~~~~~ 269 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS----AEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLN 269 (421)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 86899985467874599999999999866983899925799----99999999998548977666528999899999999
Q ss_pred HHHHHHHHCCCEEEEECCCCC
Q ss_conf 899996514875998654333
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTAGRL 205 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTAGR~ 205 (321)
|+.. ..+..+.+-||++..
T Consensus 270 a~~~--l~~~~l~i~d~~~~t 288 (421)
T TIGR03600 270 AVDR--LSEKDLYIDDTGGLT 288 (421)
T ss_pred HHHH--HHCCCEEEECCCCCC
T ss_conf 9998--616878996699887
No 332
>PRK06761 hypothetical protein; Provisional
Probab=96.45 E-value=0.0048 Score=41.66 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=33.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE-------ECCCCCHH
Q ss_conf 231135444442478999999985226742677-------43451245
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-------AGDTFRSA 153 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lv-------a~DtfR~a 153 (321)
.|++=|+.|||||||+.+|+..+...|..|-+. .+|-+|.|
T Consensus 4 LIiIEGlPGsGKSTta~~l~d~L~~~g~~v~~~~Egd~~hP~D~~~~A 51 (281)
T PRK06761 4 LIIIEGLPGFGKSTTAHLLNDKLSQLKIEVELFVEGDLNHPADYDWVA 51 (281)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 799966899980149999999998669853899507899961112221
No 333
>PRK07413 hypothetical protein; Validated
Probab=96.45 E-value=0.053 Score=34.37 Aligned_cols=175 Identities=16% Similarity=0.195 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCC------CHHHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHH
Q ss_conf 88989999999999987512789------9899999--999987852010012100013667412311354444424789
Q gi|254780709|r 57 DIGVAVAQKIVEELLTKRYAKDV------SVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 (321)
Q Consensus 57 DVg~~va~~Iie~ik~~~~~~~i------~~~~i~~--~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~ 128 (321)
+.|+--.+++++-|+++-...++ -+++++. +|..++...-.|...+...+++..-.|=.+. -||=||||.+
T Consensus 139 ~~Gll~~deVl~~L~~RP~~~eVVlTGR~AP~eLIe~ADLVTEMrp~~hp~~~~~~~~~~~~~~I~VYT-G~GKGKTTAA 217 (382)
T PRK07413 139 DLGLLPVDEVVKTLKSRPEGLEIIITGRAAPQSLLDIADLHSEMRAHRRPEASEDGVPFNSSGGIEIYT-GEGKGKSTSA 217 (382)
T ss_pred HCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEC-CCCCCHHHHH
T ss_conf 579805999999997099998899959999999998623355257656886553454457889759955-8997699999
Q ss_pred HHHHHHHHHCC------CCEEEEE-----CCCCCHHHHHHHHH-HH-----HHHCCCCCCCCCCCCCH--HHHHHHHHHH
Q ss_conf 99999985226------7426774-----34512456889999-97-----53035321223586612--4542289999
Q gi|254780709|r 129 GKLSKKMSDAG------LKVMLAA-----GDTFRSAAIDQLKI-WA-----DRTSADFVCSEIGSDAA--ALAYEAFKQA 189 (321)
Q Consensus 129 aKLA~~~~~~g------~kV~lva-----~DtfR~aA~eQL~~-~a-----~~~~v~~~~~~~~~dp~--~v~~~a~~~a 189 (321)
-=||-+..-+| +||+++- -..=.-+|++-|.. |. .+.|-+.|.-.....|. ..|.+|.+.|
T Consensus 218 lGlAlRA~G~G~~~~~~~rV~iiQFiKG~~~ygE~~a~~~l~~~~p~~~~~~~~g~~~~~~~~~~~~~d~~~A~~a~e~a 297 (382)
T PRK07413 218 LGKALQAIGRGISQDKSHRVLILQWLKGGSGYTEDAAIAALRESYPHLVDHLRSGRDAIVWRGQQQPIDYVEAERAWEIA 297 (382)
T ss_pred HHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99999974499876778569999985599973289999987500752447743178556669999888999999999999
Q ss_pred H----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 6----514875998654333211577899998998763022234301123102
Q gi|254780709|r 190 Q----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 (321)
Q Consensus 190 ~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVld 238 (321)
+ +..||+||.|-.. ..+--+|-.+..|++-. ...|..+-||+-
T Consensus 298 ~~~i~sg~ydlVILDEin-----~Al~~gll~~e~Vl~~l-~~rP~~~elVlT 344 (382)
T PRK07413 298 RAAIASGLYKTIILDELN-----PTVDLELLPVEPIVQTL-LRKPRDTEVIIT 344 (382)
T ss_pred HHHHHCCCCCEEEEECCH-----HHHHCCCCCHHHHHHHH-HHCCCCCEEEEE
T ss_conf 999865885889983316-----88875997799999999-848998889995
No 334
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=96.44 E-value=0.0046 Score=41.78 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=52.5
Q ss_pred EEECCCCCCC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHHHH
Q ss_conf 2311354444-42478999999985226742677434512456889999975303532122358661245-422899996
Q gi|254780709|r 113 VILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL-AYEAFKQAQ 190 (321)
Q Consensus 113 vil~vG~nG~-GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v-~~~a~~~a~ 190 (321)
-+-+|||||. |||||+-=++.+|.+.|+|++|+.+=-||.+.- ++-.... ..+-|.++ ++..+..+.
T Consensus 87 ~l~viGvTGTNGKTtt~~li~~~l~~~G~~tgliGT~g~~~~g~-~~~~~~~----------~~TTP~~~~~q~~L~~~~ 155 (494)
T TIGR01085 87 KLKVIGVTGTNGKTTTTSLIAQLLELLGKKTGLIGTIGYRLGGN-ELIKDPA----------SLTTPEALTLQKTLAEMV 155 (494)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCC-CCCCCCC----------CCCCCCCHHHHHHHHHHH
T ss_conf 51689997128744899999999986797089986545304776-3126655----------567997189999999999
Q ss_pred HHCCCEEEEECC
Q ss_conf 514875998654
Q gi|254780709|r 191 AKKVDVLIIDTA 202 (321)
Q Consensus 191 ~~~~DvvliDTA 202 (321)
.++.+..++-..
T Consensus 156 ~~g~~~~v~EvS 167 (494)
T TIGR01085 156 EAGAQYAVMEVS 167 (494)
T ss_pred HCCCCEEEEEEE
T ss_conf 659979999863
No 335
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.022 Score=37.07 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=86.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 412311354444424789999999852267426774-3451245688999997530353212235866124542289999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA-GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva-~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
-.++=+.||-|+||||-+--++.-.++.|.+|+.|. .-+||+.=..|+-..- ++--++..++..+.....-+.+...
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~--~d~l~v~~~~~~e~q~~i~~~~~~~ 137 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL--LDNLLVSQPDTGEQQLEIAEKLARS 137 (279)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH--HCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 35899846887654668999988865379808999589998999999988754--2153686689779999999999875
Q ss_pred HHHCCCEEEEECCCCCCCH------------HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6514875998654333211------------5778999989987630222343011231023352257789998764358
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNN------------SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~------------~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~ 257 (321)
-.+.+|+|+||...-+-.. ..+...|.++.+.++++. +..++ .+|.. ..++
T Consensus 138 ~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~------~~vi~--------~NQv~---~k~~ 200 (279)
T COG0468 138 GAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYN------TAVIF--------TNQVR---AKIG 200 (279)
T ss_pred CCCCCCEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC------CEEEE--------ECCEE---EECC
T ss_conf 4688788998257434636554853489999999999999999999749------58999--------78403---4067
Q ss_pred CCEEEEECCC-CCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 9769996545-78706999999999769889997
Q gi|254780709|r 258 TTGLIMTKMD-GTARGGGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 258 ~~g~I~TKlD-~ta~~G~~ls~~~~~~~Pi~fig 290 (321)
.. +- | .++-||.+|-......+-+.-++
T Consensus 201 ~~---f~--~~~~~~GG~~L~~~as~rl~l~k~~ 229 (279)
T COG0468 201 VM---FG--DPETTTGGNALKFYASVRLDLRRIE 229 (279)
T ss_pred CC---CC--CCCCCCCCHHHHHHHHEEEEEEECC
T ss_conf 66---68--8665877238875532477765224
No 336
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.026 Score=36.54 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=58.6
Q ss_pred EEECC-CCCCCCHHHHHHHHH-------HHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC-------CCCC
Q ss_conf 23113-544444247899999-------9985---2267426774345124568899999753035321-------2235
Q gi|254780709|r 113 VILVV-GVNGVGKTTVIGKLS-------KKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-------CSEI 174 (321)
Q Consensus 113 vil~v-G~nG~GKTTT~aKLA-------~~~~---~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~-------~~~~ 174 (321)
+.+|+ |+-|+||||-+--|. +||- .+-.+|+.++|.-+|.-+.+-|+-...+++++-- ..-.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~ 169 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS 169 (402)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHEECCCCC
T ss_conf 05898448862376899999999986477745335588807999822686889999999998709985763220000245
Q ss_pred CCCC----HHH--HHHHHHHHHHHCCCEEEEECC
Q ss_conf 8661----245--422899996514875998654
Q gi|254780709|r 175 GSDA----AAL--AYEAFKQAQAKKVDVLIIDTA 202 (321)
Q Consensus 175 ~~dp----~~v--~~~a~~~a~~~~~DvvliDTA 202 (321)
|+++ .+- ...-+.......+|+|+||+-
T Consensus 170 Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 170 GAADESDVLSPKLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf 6787200105899999999998747874997344
No 337
>PRK02362 ski2-like helicase; Provisional
Probab=96.43 E-value=0.029 Score=36.25 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=71.8
Q ss_pred EECCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCC--CCCCCCCCCHH-----HHH
Q ss_conf 311354444424789999999-852267426774345124568899999753--03532--12235866124-----542
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADR--TSADF--VCSEIGSDAAA-----LAY 183 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~-~~~~g~kV~lva~DtfR~aA~eQL~~~a~~--~~v~~--~~~~~~~dp~~-----v~~ 183 (321)
++++=|||+||| -+|-+|.. ...+|+|++.++ .|||=|-|+.+.|.+. .|+.+ ..+....++.. |+-
T Consensus 42 lvvsaPTgsGKT-lvAElail~~l~~g~k~vYi~--P~kALa~EK~~~~~~~~~~gi~V~~~tGd~~~~~~~l~~~dIiV 118 (736)
T PRK02362 42 LLAAIPTASGKT-LLAELAMLKAIAEGGKALYIV--PLRALASEKFEEFSEFSELGLRVGISTGDYDRRDEYLGRNDIIV 118 (736)
T ss_pred EEEECCCCCCHH-HHHHHHHHHHHHHCCEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCCEEE
T ss_conf 899799998589-999999999998399799985--87999999999999874579989998089887831436899999
Q ss_pred HHHHHHH---------HHCCCEEEEECCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 2899996---------5148759986543------332115778999989987630222343011231023352257789
Q gi|254780709|r 184 EAFKQAQ---------AKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 (321)
Q Consensus 184 ~a~~~a~---------~~~~DvvliDTAG------R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~ 248 (321)
-+.+++. .++..+|+||=.- |-.+=+.++. ++.. ..|+--+.-|+||.+ |+-+.
T Consensus 119 ~T~EK~dsl~r~~~~~l~~v~lVViDEiHli~d~~RG~~lE~~ls---kl~~-------~~~~iqiIgLSATl~-N~~~l 187 (736)
T PRK02362 119 ATSEKTDSLLRNGAPWIDDISCVVADEVHLIDSPNRGPTLEVTLA---KLRR-------LNPDMQVIALSATIG-NADEL 187 (736)
T ss_pred ECHHHHHHHHHCCCHHHHCCCEEEEECCEEECCCCCHHHHHHHHH---HHHH-------CCCCCEEEEEECCCC-CHHHH
T ss_conf 997999999844816765089899817678668872499999999---9973-------387743898624558-99999
Q ss_pred HH
Q ss_conf 99
Q gi|254780709|r 249 VE 250 (321)
Q Consensus 249 a~ 250 (321)
|+
T Consensus 188 a~ 189 (736)
T PRK02362 188 AA 189 (736)
T ss_pred HH
T ss_conf 99
No 338
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.42 E-value=0.003 Score=43.09 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=43.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHH
Q ss_conf 2311354444424789999999852267426774345124568899999753035321223---5866124542289999
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE---IGSDAAALAYEAFKQA 189 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~---~~~dp~~v~~~a~~~a 189 (321)
-|+++|++|+||||++.-|+.++-.. .++..+ -|++-. .|. ...-+.+.... .+..+.+ ..+++..+
T Consensus 27 nIlIsG~tGSGKTTll~al~~~i~~~-~rivti-Ed~~El----~l~---~~~~v~l~~~~~~~~~~~~~~-~~~li~~a 96 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPD-ERIITI-EDTAEL----QLP---HPNWVRLVTRPGNVEGSGEVT-MADLLRSA 96 (186)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCC-CCEEEE-CCCHHH----CCC---CCCEEEEEEECCCCCCCCEEC-HHHHHHHH
T ss_conf 89998999998999999999613345-645984-153540----477---775688886046457865034-99998873
Q ss_pred HHHCCCEEEEE
Q ss_conf 65148759986
Q gi|254780709|r 190 QAKKVDVLIID 200 (321)
Q Consensus 190 ~~~~~DvvliD 200 (321)
...+-|.|++-
T Consensus 97 LR~~pd~iivG 107 (186)
T cd01130 97 LRMRPDRIIVG 107 (186)
T ss_pred CCCCCCEEECC
T ss_conf 66899737317
No 339
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.42 E-value=0.0036 Score=42.56 Aligned_cols=57 Identities=19% Similarity=0.482 Sum_probs=47.8
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-----------HHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456-----------8899999753
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA-----------IDQLKIWADR 164 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA-----------~eQL~~~a~~ 164 (321)
.++|.++.|.|+.|+||||-+-.|...|...|+++.+.-.|..|.|= .|.++-.|+.
T Consensus 440 g~~~~~iw~tGlsgsGKstiA~~le~~L~~~g~~~~~LDGd~lR~gl~~dlgf~~~dR~enirR~~ev 507 (613)
T PRK05506 440 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYVLDGDNVRHGLNRDLGFTDADRVENIRRVAEV 507 (613)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 89976999977898974799999999999779987998808987410457797989999999999999
No 340
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.40 E-value=0.026 Score=36.53 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=27.5
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 41231135444442478999999985226742677434
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D 148 (321)
-.++.++||||+||||.+-=++-.++-..-+|.+-.-+
T Consensus 27 Ge~~~lvGpnGaGKSTLl~~i~Gl~~p~~G~I~~~G~~ 64 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVPPQHGSITLDGKP 64 (255)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 98999999998469999999975998899718579964
No 341
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.0042 Score=42.06 Aligned_cols=47 Identities=32% Similarity=0.541 Sum_probs=43.1
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 66741231135444442478999999985226742677434512456
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA 154 (321)
..+|.+|-|.|+-|+||||-+-.|+..+..+|+++-+.-.|.-|-+=
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL 66 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGL 66 (197)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCC
T ss_conf 79985999646888878799999999999759758985574676500
No 342
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=96.38 E-value=0.11 Score=32.20 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=20.7
Q ss_pred EECCCC-CCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 311354-4444247899999998522674267
Q gi|254780709|r 114 ILVVGV-NGVGKTTVIGKLSKKMSDAGLKVML 144 (321)
Q Consensus 114 il~vG~-nG~GKTTT~aKLA~~~~~~g~kV~l 144 (321)
|+++.. .|+||||.+==|...+.++|.||+.
T Consensus 4 IyIa~te~~sGKTsVaLGL~~aL~r~g~KVGf 35 (702)
T PRK05632 4 IYLAPTGTGVGLTSVSLGLVRALERKGVKVGF 35 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99962799987999999999999836884799
No 343
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.38 E-value=0.0052 Score=41.46 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=37.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 412311354444424789999999852267426774345124568899999753035
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
-.++.++|+||+||||.+-=|+-.++-..-+|.+-.-|+-......++ ..++|+
T Consensus 28 Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~G~I~v~G~d~~~~~~~~~~---r~~ig~ 81 (274)
T PRK13644 28 GEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI---RKLVGI 81 (274)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHH---HHHEEE
T ss_conf 999999999998099999999706858887299999987870567999---873179
No 344
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.38 E-value=0.011 Score=39.07 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=20.0
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6741231135444442478999999985
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
+++.-++|-||.|+||||.+-=||+.+.
T Consensus 35 ~~~~s~Il~GPPG~GKTTlA~iiA~~~~ 62 (417)
T PRK13342 35 GRLSSMILWGPPGTGKTTLARIIAGATD 62 (417)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9997599889699989999999999868
No 345
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.35 E-value=0.019 Score=37.50 Aligned_cols=173 Identities=21% Similarity=0.225 Sum_probs=89.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCC-C-----------CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCC
Q ss_conf 41231135444442478999999985226-7-----------42677434512456889999975303532122-35866
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-L-----------KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSD 177 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g-~-----------kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~-~~~~d 177 (321)
..|+.+.|=+|.||||++-=++..|.+.+ . -..+-||-|=|||= ||...--+.-..++.. .++.|
T Consensus 365 ~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAk--Rl~E~TG~~a~TIHRLlG~~~~ 442 (769)
T TIGR01448 365 DKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAK--RLAEVTGLEALTIHRLLGYGSD 442 (769)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHH--HCCCCCCCHHHHHHHHHCCCCC
T ss_conf 94899857788861689999999998716877553124567764887377437888--5110026212347786368988
Q ss_pred CHHHHHH-HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--EEEEECCCCC------CHHHHHH
Q ss_conf 1245422-89999651487599865433321157789999899876302223430--1123102335------2257789
Q gi|254780709|r 178 AAALAYE-AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH--SVLQVLDATT------GQNALRQ 248 (321)
Q Consensus 178 p~~v~~~-a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~--~~~lVlda~~------gq~~~~~ 248 (321)
.-.++ -++ ..=+||+||||=.+. .|.-||..|-.. -|+ ..+||-|+-. ||--.+-
T Consensus 443 --~~~~~k~~~--~~~~~DL~IvDE~SM--~Dt~L~~~lL~a----------~P~~a~lllVGD~DQLPSV~pG~VL~DL 506 (769)
T TIGR01448 443 --TKSENKNLE--DPIDADLLIVDESSM--VDTWLASSLLAA----------VPDHARLLLVGDADQLPSVGPGQVLKDL 506 (769)
T ss_pred --CCCCCHHHC--CCCCCCEEEEECCCH--HHHHHHHHHHHH----------CCCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf --873211011--347877699814621--889999999861----------7977779888376888988644089999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE-EEECCCCCCCCCCCCHHH
Q ss_conf 998764358976999654578706999999999769889-997589813255577899
Q gi|254780709|r 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY-FLGVGEGINDLEPFVAKD 305 (321)
Q Consensus 249 a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~-fig~Ge~i~Dl~~f~~~~ 305 (321)
++ .+.+|. +=|||.===+.+-.++..+.....-.. -+-..+.-.|+..+..++
T Consensus 507 i~--s~~iP~--~~LT~vyRQ~~~S~Ii~~Ah~~~~G~~Pvlnss~~~~Df~~~~~~~ 560 (769)
T TIGR01448 507 IQ--SKVIPV--TRLTKVYRQAEGSSIITLAHKILQGEAPVLNSSSAKKDFKFLKLDR 560 (769)
T ss_pred HH--CCCCCE--EECCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 84--688661--2121112411366467888987317887523244676677776400
No 346
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.35 E-value=0.053 Score=34.36 Aligned_cols=140 Identities=17% Similarity=0.230 Sum_probs=75.2
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
.-|+++|-.|||||+-+-++...--.. .|...+|+++.... +-. ..
T Consensus 4 ~KivlvGd~~vGKTsli~r~~~~~f~~---------------------~~~~Tig~~~~~k~-------v~~------~~ 49 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNP---------------------SFISTIGIDFKIRT-------IEL------DG 49 (167)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCC---------------------CCCCCCCEEEEEEE-------EEE------CC
T ss_conf 999999999978899999996099999---------------------86898646889999-------999------99
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC----C--CC-EEEEE
Q ss_conf 14875998654333211577899998998763022234301123102335225778999876435----8--97-69996
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA----G--TT-GLIMT 264 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~----~--~~-g~I~T 264 (321)
+.+.+-|.||||.-... .+.... . ...+-.+||.|.+. +++++.++.+.+.+ + +- -+|-+
T Consensus 50 ~~i~l~iwDt~G~e~~~-----~~~~~y--~-----~~a~~~ilvfdit~-~~Sf~~~~~w~~~i~~~~~~~~~~ilVgN 116 (167)
T cd01867 50 KKIKLQIWDTAGQERFR-----TITTAY--Y-----RGAMGIILVYDITD-EKSFENIRNWMRNIEEHASEDVERMLVGN 116 (167)
T ss_pred EEEEEEEEECCCCCCHH-----HHHHHH--H-----HHCCEEEEECCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 99999999899970011-----667998--5-----65058899556898-79999999999999986699970576421
Q ss_pred CCCCCC----CHHHHHHHHHHHCCCEEEEEC--CCCCCCC
Q ss_conf 545787----069999999997698899975--8981325
Q gi|254780709|r 265 KMDGTA----RGGGLIPIVVTHKIPVYFLGV--GEGINDL 298 (321)
Q Consensus 265 KlD~ta----~~G~~ls~~~~~~~Pi~fig~--Ge~i~Dl 298 (321)
|.|-.. ..--+-..+...+.|...++. |++|+++
T Consensus 117 K~Dl~~~r~v~~~e~~~~a~~~~~~~~e~SAktg~nI~e~ 156 (167)
T cd01867 117 KCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEA 156 (167)
T ss_pred CCCCHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHH
T ss_conf 2450230779999999999980996999822579078999
No 347
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=96.34 E-value=0.11 Score=32.05 Aligned_cols=163 Identities=19% Similarity=0.213 Sum_probs=90.2
Q ss_pred EECCCC-CCCCHHHHHHHHHHHHHHCCCCEEE---EECCCCCHH---HHHHHHHHHHHHC----CCCCCCCCCCCCHH--
Q ss_conf 311354-4444247899999998522674267---743451245---6889999975303----53212235866124--
Q gi|254780709|r 114 ILVVGV-NGVGKTTVIGKLSKKMSDAGLKVML---AAGDTFRSA---AIDQLKIWADRTS----ADFVCSEIGSDAAA-- 180 (321)
Q Consensus 114 il~vG~-nG~GKTTT~aKLA~~~~~~g~kV~l---va~DtfR~a---A~eQL~~~a~~~~----v~~~~~~~~~dp~~-- 180 (321)
+.+.|- +|+|||...+=||++++.+|.+|.. |.+.+...+ -.+.|+..+...- +..|.-....-|.-
T Consensus 5 ~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~sPhlAa 84 (223)
T COG0132 5 FFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPLSPHLAA 84 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHH
T ss_conf 99982799964999999999999968970598775221787789974599999851998663354335307888847778
Q ss_pred ------HHH----HHHHHHHHHCCCEEEEECCCCC--CCHHH-HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH--HH
Q ss_conf ------542----2899996514875998654333--21157-789999899876302223430112310233522--57
Q gi|254780709|r 181 ------LAY----EAFKQAQAKKVDVLIIDTAGRL--HNNSI-LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ--NA 245 (321)
Q Consensus 181 ------v~~----~a~~~a~~~~~DvvliDTAGR~--~~~~~-lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq--~~ 245 (321)
|-. +.+... .+.||.|||--||=+ +..++ .+. ++.+.. -..++||...-.|- .+
T Consensus 85 ~~eg~~I~~~~l~~~l~~l-~~~~d~vlVEGAGGl~vPl~~~~~~~---D~~~~~-------~lpvILV~~~~LGtINHt 153 (223)
T COG0132 85 ELEGRTIDLEKLSQGLRQL-LKKYDLVLVEGAGGLLVPLTEEYTFA---DLAVQL-------QLPVILVVGIKLGTINHT 153 (223)
T ss_pred HHCCCCCCHHHHHHHHHHH-HCCCCEEEEECCCCEEEECCCCCCHH---HHHHHC-------CCCEEEEECCCCCHHHHH
T ss_conf 7648935699998788854-05467899967873333257865299---999980-------999999966775778799
Q ss_pred HHHHHHH-HHHCCCCEEEEECCCCCCCHHHHH--HHHHHHCCCEE
Q ss_conf 7899987-643589769996545787069999--99999769889
Q gi|254780709|r 246 LRQVEMF-HAVAGTTGLIMTKMDGTARGGGLI--PIVVTHKIPVY 287 (321)
Q Consensus 246 ~~~a~~F-~~~~~~~g~I~TKlD~ta~~G~~l--s~~~~~~~Pi~ 287 (321)
+=.++.- +.-+++-|+|+-........=... .+...++.|+.
T Consensus 154 lLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~~ 198 (223)
T COG0132 154 LLTVEALRARGLPLAGWVANGINPELDHYAEINATLLKRIGAPLL 198 (223)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999997799878999726788555788889999974289743
No 348
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.34 E-value=0.0063 Score=40.84 Aligned_cols=164 Identities=12% Similarity=0.068 Sum_probs=73.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
-.++.++|+||+||||.+-=|+..+.-..-+|.+-.-|.-.. .+..+..++|. +|..+...-+...+++-+.++.
T Consensus 30 GE~vaivG~nGsGKSTL~~~l~Gll~p~~G~I~i~G~~i~~~----~~~~lr~~ig~-VfQ~p~~~~~~~tV~e~i~fgl 104 (276)
T PRK13650 30 GEWLSIIGHNGSGKSTTVRLIDGLLEAESGSIIIDGDLLTEE----NVWEIRHKIGM-VFQNPDNQFVGATVEDDVAFGL 104 (276)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCC----CHHHHHHCEEE-EEECCCHHCCCCCHHHHHHHHH
T ss_conf 989999999998799999999738898860899999999867----76887641469-9767201056363999998799
Q ss_pred H-HCCC--------------EEEEECCCCCCCHH-HHHHHHHHHHHHHHCCCCCCCCEEEEECCC-CCCHHHHHH-----
Q ss_conf 5-1487--------------59986543332115-778999989987630222343011231023-352257789-----
Q gi|254780709|r 191 A-KKVD--------------VLIIDTAGRLHNNS-ILMAGIGKMIRVLKRLDPHAPHSVLQVLDA-TTGQNALRQ----- 248 (321)
Q Consensus 191 ~-~~~D--------------vvliDTAGR~~~~~-~lm~EL~ki~~v~~~~~~~~p~~~~lVlda-~~gq~~~~~----- 248 (321)
. .+.+ +=+-|-+-|.+..- -=+.+...|.+++- ..|. +|++|= |++.|...+
T Consensus 105 ~~~g~~~~e~~~rv~~~l~~~gl~~~~~r~p~~LSGGQrQRvaIA~aLa----~~P~--lLilDEPTs~LD~~~~~~i~~ 178 (276)
T PRK13650 105 ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA----MRPK--IIILDEATSMLDPEGRLELIK 178 (276)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHH----CCCC--EEEEECCCCCCCHHHHHHHHH
T ss_conf 8779999999999999998779924553890338999999999999997----3999--999838866589999999999
Q ss_pred -HHHHHHHCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf -99876435897699965-4578706999999999769889997589813
Q gi|254780709|r 249 -VEMFHAVAGTTGLIMTK-MDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 (321)
Q Consensus 249 -a~~F~~~~~~~g~I~TK-lD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~ 296 (321)
.+..++..+.|-+++|- ||. + . .---|..+-.|+-+.
T Consensus 179 ~l~~l~~~~g~Tvi~iTHdl~~------v----~-~aDrvivm~~G~Iv~ 217 (276)
T PRK13650 179 TIKNIRDDYQLTVISITHDLDE------V----A-LSDRVLVMKDGQVES 217 (276)
T ss_pred HHHHHHHHCCCEEEEEEECHHH------H----H-CCCEEEEEECCEEEE
T ss_conf 9999998429899999577899------9----6-099999998999999
No 349
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.038 Score=35.35 Aligned_cols=81 Identities=28% Similarity=0.409 Sum_probs=54.7
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 74123113544444247899999998522674267743451245688999997530353212235866124542289999
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
++.-++|.|+.|+|||--++=+|+.+.+.|.+|+++++-- -+.+|+.--.. +.-... +..
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~e----l~~~Lk~~~~~----------~~~~~~-----l~~- 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD----LLSKLKAAFDE----------GRLEEK-----LLR- 163 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH----HHHHHHHHHHC----------CCHHHH-----HHH-
T ss_conf 5882899899998799999999999998398499988599----99999998745----------526899-----998-
Q ss_pred HHHCCCEEEEECCCCCCCHHH
Q ss_conf 651487599865433321157
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNNSI 210 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~~~ 210 (321)
...++||++||--|=.+.+..
T Consensus 164 ~l~~~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 164 ELKKVDLLIIDDIGYEPFSQE 184 (254)
T ss_pred HHHHCCEEEEECCCCCCCCCH
T ss_conf 875289899823677668815
No 350
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.33 E-value=0.0058 Score=41.11 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=34.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 412311354444424789999999852267426774345124568899999753035321223
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~ 173 (321)
-..+.++|+||+||||.+-=|+..+.-.....+-+..|-...... .+..+.+++|. +|..+
T Consensus 34 Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~~~~G~i~~~g~~i~~~-~~~~lr~~vg~-VfQ~P 94 (283)
T PRK13640 34 GSWTALIGHNGSGKSTISKLINGLLLPDDNPKSKITVDGITLTAK-TVWDIREKVGI-VFQNP 94 (283)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC-CHHHHHHCEEE-EEECC
T ss_conf 999999999998799999999640378888617999999999967-98899626189-98688
No 351
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.32 E-value=0.02 Score=37.32 Aligned_cols=176 Identities=17% Similarity=0.202 Sum_probs=95.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----------HCCCC--CCCCCCCCC
Q ss_conf 412311354444424789999999852267426774345124568899999753----------03532--122358661
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----------TSADF--VCSEIGSDA 178 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~----------~~v~~--~~~~~~~dp 178 (321)
|..+++-|.||.|||--+..+++=+-.+|++|..+++-.==-.=+.|....+-- .=+|+ ++...+..+
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~ 107 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRS 107 (235)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCCCCCCHHH
T ss_conf 76999988898548899999999887089548999840359999998886388716877506268999324542257377
Q ss_pred H-HHHHHHHHHHHHHCCCEEEEECCCCCCCHH------HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 2-454228999965148759986543332115------778999989987630222343011231023352257789998
Q gi|254780709|r 179 A-ALAYEAFKQAQAKKVDVLIIDTAGRLHNNS------ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 (321)
Q Consensus 179 ~-~v~~~a~~~a~~~~~DvvliDTAGR~~~~~------~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~ 251 (321)
+ +....-++.-+..+.||+|||+---...+. +.|..++++..- ---++++ ..|.+++..-.
T Consensus 108 ~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~--------gKvIilT----vhp~~l~e~~~ 175 (235)
T COG2874 108 ARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDL--------GKVIILT----VHPSALDEDVL 175 (235)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHC--------CCEEEEE----ECHHHCCHHHH
T ss_conf 89999999755775237789995343776526499999999999998728--------9789999----47343378999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHH
Q ss_conf 76435897699965457870699999999976988999758981325557789
Q gi|254780709|r 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 (321)
Q Consensus 252 F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~ 304 (321)
+.=..--|..+. |--..=||-..++.. -++|-|.++.+.++-+|+.+
T Consensus 176 ~rirs~~d~~l~--L~~~~~Gg~~~~~~~----i~K~~ga~~s~~~~I~F~V~ 222 (235)
T COG2874 176 TRIRSACDVYLR--LRLEELGGDLIKVLE----IVKYRGARKSFQNIISFRVE 222 (235)
T ss_pred HHHHHHHHEEEE--EEHHHHCCEEEEEEE----EEEECCCHHHCCCCEEEEEC
T ss_conf 999875202589--870231784558778----76654713321774058855
No 352
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.019 Score=37.53 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-HHHHH
Q ss_conf 6674123113544444247899999998522-674267743451245688999997530353212235866124-54228
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA-LAYEA 185 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~-g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~-v~~~a 185 (321)
..-|+.++|.|+.|+||||++..+|+.+-.. +.... .|+ +. .++..+. ..+.+-++ -..+.
T Consensus 17 ~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~--~~~------------~~--~~~~~id-~~~~~i~~~~i~~~ 79 (303)
T PRK07132 17 NKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLN--LEE------------LP--YNIFLFD-IFDEDLSKEEFLSA 79 (303)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--CCC------------CC--CCCEEEC-CCCCCHHHHHHHHH
T ss_conf 9976168867899867999999999997299878887--545------------65--3230413-32220016889999
Q ss_pred HHHHH-----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99996-----5148759986543332115778999989987630222343011231023352257789998764
Q gi|254780709|r 186 FKQAQ-----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 (321)
Q Consensus 186 ~~~a~-----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~ 254 (321)
++... ..++-+++||-|-++..... +++=|..+..|..+++.+-++..+.....+..=++
T Consensus 80 i~~~~~~~~~~~~~Kv~IIdea~~lt~~A~---------NaLLKtLEEPp~~~~fil~t~~~~~il~TI~SRCq 144 (303)
T PRK07132 80 IEKFSFSSFVSNQKKILIIKNIEKTSNSSL---------NALLKTIEEPSKNTYFLLTTKNINKVIPTIVSRCQ 144 (303)
T ss_pred HHHHHHCCCCCCCEEEEEEECHHHCCHHHH---------HHHHHHCCCCCCCEEEEEEECCHHHCCHHHHHCCE
T ss_conf 999973665568706999816553399999---------99998703898684899972882438377863665
No 353
>PRK06762 hypothetical protein; Provisional
Probab=96.31 E-value=0.01 Score=39.35 Aligned_cols=90 Identities=19% Similarity=0.315 Sum_probs=50.1
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
+..|.+=|.-||||||++..|-.+| |..++||+-|+.|= +=|+. ...+|.-...+....+.++.
T Consensus 2 t~LIiiRGNSgSGKtT~Ak~L~~~~---G~g~lLvsQD~vRR---~mLr~----------kD~~g~~~i~Li~~~~~yg~ 65 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVRR---DMLRV----------KDGPGNLSIDLIEQLVRYGL 65 (166)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEHHHHHH---HHHHC----------CCCCCCCCHHHHHHHHHHHH
T ss_conf 5289997888888789999999986---88857853758999---98405----------57799978689999999998
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 514875998654333211577899998
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGK 217 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~k 217 (321)
.++ +.||+.--=.......+..+|..
T Consensus 66 ~~~-~~VIlEGIL~a~~Yg~ml~~l~~ 91 (166)
T PRK06762 66 QHC-EFVILEGILNSDRYGPMLKELIH 91 (166)
T ss_pred HCC-CEEEEEEECCHHHHHHHHHHHHH
T ss_conf 569-98999741004489999999998
No 354
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=96.30 E-value=0.011 Score=39.16 Aligned_cols=27 Identities=41% Similarity=0.661 Sum_probs=20.2
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 674123113544444247899999998
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKM 135 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~ 135 (321)
-.|.-|+|+||+|||||--+-.||...
T Consensus 48 i~pkNILmIGPTGvGKTeIARrLAkl~ 74 (442)
T PRK05201 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (442)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 464316887888866789999999984
No 355
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.30 E-value=0.0046 Score=41.81 Aligned_cols=123 Identities=21% Similarity=0.240 Sum_probs=69.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHH-HHHH---HCCCC-E-EEEECCCCCHHHH--HHHHHHHHHHCCC---CCCCCCCCCCH
Q ss_conf 4123113544444247899999-9985---22674-2-6774345124568--8999997530353---21223586612
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLS-KKMS---DAGLK-V-MLAAGDTFRSAAI--DQLKIWADRTSAD---FVCSEIGSDAA 179 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA-~~~~---~~g~k-V-~lva~DtfR~aA~--eQL~~~a~~~~v~---~~~~~~~~dp~ 179 (321)
....+++|=+|.|||||++||= +..+ .+|+- . .-+++-|=+|||- |-|+.....+... +=...-.+.|+
T Consensus 242 ~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~ 321 (753)
T TIGR01447 242 SNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDLIAALPS 321 (753)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCH
T ss_conf 87689987988977899999999999989864997404788668447999999999988632234236658798548720
Q ss_pred HHHHHHHHHHH--------------H--HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC---CCCCEEEEECCCC
Q ss_conf 45422899996--------------5--148759986543332115778999989987630222---3430112310233
Q gi|254780709|r 180 ALAYEAFKQAQ--------------A--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP---HAPHSVLQVLDAT 240 (321)
Q Consensus 180 ~v~~~a~~~a~--------------~--~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~---~~p~~~~lVlda~ 240 (321)
.+ .+|.+.- . -.+||++||=|= ..|-+||.-|. +.+....- -+.+.-+|+-|..
T Consensus 322 ~~--~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaS--MVdl~lm~kL~---~A~~~~~k~~KLy~~~LIllGD~n 394 (753)
T TIGR01447 322 EA--TTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLL---KALPPNTKDKKLYADRLILLGDKN 394 (753)
T ss_pred HH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCH--HCCHHHHHHHH---HHCCCCCCCCCHHHCCCCEECCCC
T ss_conf 45--688886166147876776777788985527870600--22679999999---722630013201010200122678
No 356
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.013 Score=38.72 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=42.9
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 412311354444424789999999852267426774345124568899999753035321223586612454228999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~ 188 (321)
-.++.++|+||+||||.+-=|+..++-..-+|.+-..|+... ..+..+.+++|. +|..+...-....+++-+.+
T Consensus 37 GE~v~iiG~nGsGKSTL~r~l~gl~~P~~G~I~i~G~~~~~~---~~~~~~r~~ig~-vfQ~P~~~l~~~tV~e~i~f 110 (281)
T PRK13633 37 GEFLVILGHNGSGKSTIAKHMNALLLPSEGKVYVDGLDTSDE---ENLWDIRNKAGM-VFQNPDNQIVATIVEEDVAF 110 (281)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCH---HHHHHHHHCEEE-EEECCCCCCCHHHHHHHHHH
T ss_conf 989999999998499999999758878885699999987885---669998736089-86688642028899999998
No 357
>PTZ00035 Rad51; Provisional
Probab=96.29 E-value=0.12 Score=31.88 Aligned_cols=88 Identities=22% Similarity=0.280 Sum_probs=50.2
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHH---HC-C--CCEEEE-ECCCCCHHHHHHHHHHHHHHCCC--------CCCCCCCC
Q ss_conf 1231135444442478999999985---22-6--742677-43451245688999997530353--------21223586
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMS---DA-G--LKVMLA-AGDTFRSAAIDQLKIWADRTSAD--------FVCSEIGS 176 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~---~~-g--~kV~lv-a~DtfR~aA~eQL~~~a~~~~v~--------~~~~~~~~ 176 (321)
.+-=+.|..|+|||.-|--||-..+ .. | -+|+.| +=.||||-=+.|+ |++.+.+ .|...+..
T Consensus 131 sITEi~Ge~gsGKTQlChqLaV~~QLP~~~GG~~GkvvYIDTEgtFrpeRi~qI---A~~~gld~~~vL~nI~~ara~n~ 207 (350)
T PTZ00035 131 GITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTFRPERIVAI---AKRYGLHPTDCLNNIAYAKAYNC 207 (350)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCHHHHHHH---HHHCCCCHHHHHHHEEEEEECCH
T ss_conf 587897279897899999999990485777798862799968899878999999---98709997998533223220687
Q ss_pred C-CHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 6-1245422899996514875998654
Q gi|254780709|r 177 D-AAALAYEAFKQAQAKKVDVLIIDTA 202 (321)
Q Consensus 177 d-p~~v~~~a~~~a~~~~~DvvliDTA 202 (321)
| -..++..+.......++-+|+||.+
T Consensus 208 ehq~~ll~~~~~~~~e~~vrLlIVDSi 234 (350)
T PTZ00035 208 DHQTELLIDASAMMADARFALLIVDSA 234 (350)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_conf 889999999999851167589985445
No 358
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.0055 Score=41.29 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=36.6
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 4123113544444247899999998522674267743451245688999997530353
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~ 168 (321)
-.++.++|+||+||||.+-=|+-.+.-..-+|.+-..|......-..++.+..++|.-
T Consensus 33 Ge~~aiiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~iG~v 90 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDDTDITSHSKNKEIKSIRKKVGLV 90 (280)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHHEEEE
T ss_conf 9899999599986999999996699988608999999987778201399998764699
No 359
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.024 Score=36.79 Aligned_cols=182 Identities=17% Similarity=0.149 Sum_probs=84.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
-.++.++||+|+||||.+-=+|-.++-..-+|.+-.-|....... -++++ ++.-.+.--|.--+++-+.+.-
T Consensus 25 Ge~~~iiGpSGsGKSTLlr~i~Gl~~p~~G~I~~~G~di~~~~~~------~r~ig--~vfQ~~~Lfp~~tV~eNi~~~l 96 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE------KRDIS--YVPQNYALFPHMTVYKNIAYGL 96 (235)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH------HCCEE--EECCCCCCCCCCCHHHHHHHHH
T ss_conf 989999999963599999999749999965999999999999976------78978--9457986689990999999999
Q ss_pred H-HC-------------CCEEEE-ECCCCCCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-CCCH------HHHH
Q ss_conf 5-14-------------875998-654333211-5778999989987630222343011231023-3522------5778
Q gi|254780709|r 191 A-KK-------------VDVLII-DTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQVLDA-TTGQ------NALR 247 (321)
Q Consensus 191 ~-~~-------------~Dvvli-DTAGR~~~~-~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda-~~gq------~~~~ 247 (321)
. ++ .+.+=+ +-+.|.+.+ .-=|++-..|-|++- ..|. +|.+|= +++. +..+
T Consensus 97 ~~~~~~~~e~~~rv~e~l~~~gl~~~~~~~p~~LSGGq~QRVaiARAl~----~~P~--llllDEP~s~LD~~~~~~i~~ 170 (235)
T cd03299 97 KKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALV----VNPK--ILLLDEPFSALDVRTKEKLRE 170 (235)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHH----CCCC--EEEEECCCCCCCHHHHHHHHH
T ss_conf 8769999999999999998779977874894458999999999999997----3899--899928876469999999999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCC-----CCHHHHHHHHCCCCC
Q ss_conf 99987643589769996545787069999999997698899975898132555-----778999998728656
Q gi|254780709|r 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP-----FVAKDFSAVITGCLD 315 (321)
Q Consensus 248 ~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~-----f~~~~~~~~llG~gd 315 (321)
..+..++..++|-+++|-= ++.+....=-|.++-.|+-+..=.| =-...|+.+++|.-+
T Consensus 171 ~l~~l~~~~~~T~i~vTHd---------~~~a~~~aDri~vl~~G~iv~~G~p~ev~~~P~~~~~a~flG~~n 234 (235)
T cd03299 171 ELKKIRKEFGVTVLHVTHD---------FEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLGFNN 234 (235)
T ss_pred HHHHHHHHHCCEEEEECCC---------HHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHCCCCC
T ss_conf 9999999829999998789---------999999699999998999999868899985899879998458132
No 360
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.012 Score=38.83 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH-----HH
Q ss_conf 9999999998751278998999999999878520100121000136674123113544444247899999998-----52
Q gi|254780709|r 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-----SD 137 (321)
Q Consensus 63 a~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~-----~~ 137 (321)
-++|++.+-+...+++-....+--.|+.-++....+ .. +...-.|.-|+|+||+|||||--+-.||... |-
T Consensus 6 PreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~--~~--lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLE--EE--LRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC--HH--HHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 799999987674071777889999999899997547--87--76225755358888888768899999999848983788
Q ss_pred C--CC-CEEEEECC
Q ss_conf 2--67-42677434
Q gi|254780709|r 138 A--GL-KVMLAAGD 148 (321)
Q Consensus 138 ~--g~-kV~lva~D 148 (321)
+ .. .|+.|.-|
T Consensus 82 EATKfTEVGYVGrD 95 (444)
T COG1220 82 EATKFTEVGYVGRD 95 (444)
T ss_pred EEEEEEECCCCCCC
T ss_conf 76421340325645
No 361
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.016 Score=38.08 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=63.4
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC-----CCCCCCHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122-----3586612454
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-----EIGSDAAALA 182 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~-----~~~~dp~~v~ 182 (321)
..-|+-++|.||.|+||++.+--+|+.+.=+.....-.+|..-+.-. +-.-+..-++-++.. +.|.....|-
T Consensus 18 ~rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~---~~~~g~HPD~~~i~p~~~~~~~g~~~~~I~ 94 (325)
T PRK08699 18 ERRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCH---LFGQGSHPDFYEITPLADEPENGRKLLQIK 94 (325)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH---HHHCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 45011797579999789999999999982899988899898888899---986599999688513445300166556676
Q ss_pred HHHHHH----HH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 228999----96----51487599865433321157789999899876302223430112310233522577899
Q gi|254780709|r 183 YEAFKQ----AQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 (321)
Q Consensus 183 ~~a~~~----a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a 249 (321)
-+.+.. +. ..++-|+|||-|-||..... +-|-| ..+..|..+++++=+...+.....+
T Consensus 95 idqiR~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aa--NaLLK-------~LEEPp~~~~fiL~t~~~~~llpTI 160 (325)
T PRK08699 95 IDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAA--NSLLK-------VLEEPPPQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHH--HHHHH-------HHCCCCCCEEEEEEECCHHHCCCHH
T ss_conf 999999999971086568946999857777589999--99999-------8417888848999879846462339
No 362
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.27 E-value=0.0051 Score=41.51 Aligned_cols=139 Identities=19% Similarity=0.285 Sum_probs=72.5
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 36674123113544444247899999998522674267743451245688999997530353212235866124542289
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
+.++..-|+++|+.||||||-+-++. .|..+-- +|.++. +...
T Consensus 9 f~kk~~kililG~~~~GKTsil~~l~-----~~~~~~~----------------------~pTvg~----~~~~------ 51 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLK-----LGESVTT----------------------IPTIGF----NVET------ 51 (175)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHH-----CCCCCCC----------------------CCCCCC----EEEE------
T ss_conf 37888999999889999899999996-----5997775----------------------797881----0799------
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHC---CCC---
Q ss_conf 999651487599865433321157789999899876302223430112310233522577899-9876435---897---
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVA---GTT--- 259 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~---~~~--- 259 (321)
...+++.+.+-||||.-. ++.| ...+.. ..+=+++|+|++-.+ .++.+ ..+++.+ .+.
T Consensus 52 --~~~~~~~l~iwD~~Gqe~-----~r~l------~~~Yy~-~a~~iIfVvD~sd~~-~~~~~~~~l~~~l~~~~~~~~p 116 (175)
T smart00177 52 --VTYKNISFTVWDVGGQDK-----IRPL------WRHYYT-NTQGLIFVVDSNDRD-RIDEAREELHRMLNEDELRDAV 116 (175)
T ss_pred --EEECCEEEEEEECCCCCC-----CCHH------HHHHCC-CCCEEEEEEECCCHH-HHHHHHHHHHHHHCCHHHCCCE
T ss_conf --998989999998999854-----5536------777557-761899998668778-9999999999996315316986
Q ss_pred -EEEEECCCC-CCCH----HHHHHHHHHHCCCEEEEE----CCCCCCC
Q ss_conf -699965457-8706----999999999769889997----5898132
Q gi|254780709|r 260 -GLIMTKMDG-TARG----GGLIPIVVTHKIPVYFLG----VGEGIND 297 (321)
Q Consensus 260 -g~I~TKlD~-ta~~----G~~ls~~~~~~~Pi~fig----~Ge~i~D 297 (321)
=++..|.|- .+.. -..+......+.|..+.. +|+.|++
T Consensus 117 iLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~GI~e 164 (175)
T smart00177 117 ILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCCCHHH
T ss_conf 999984566767889999999968665407975999826878969899
No 363
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.26 E-value=0.033 Score=35.77 Aligned_cols=139 Identities=19% Similarity=0.327 Sum_probs=72.8
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
-|+++|-.|||||+-+-++..---..... ..++.+++.... .. ...
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~~~f~~~~~---------------------~ti~~~~~~k~i-------~~------~~~ 47 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHE---------------------STTQASFFQKTV-------NI------GGK 47 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCC---------------------CCCEEEEEEEEE-------EE------CCE
T ss_conf 89999999967999999998398998767---------------------752647999999-------99------999
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH----HHHCC--CC-EEEEEC
Q ss_conf 487599865433321157789999899876302223430112310233522577899987----64358--97-699965
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF----HAVAG--TT-GLIMTK 265 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F----~~~~~--~~-g~I~TK 265 (321)
.+.+.|.||+|+..... +... + -...+-.++|.|.+. .++.+.++.+ .+..+ +. =+|-||
T Consensus 48 ~~~l~iwDt~G~~~~~~-----~~~~------~-~~~a~~~ilv~d~t~-~~Sf~~i~~~~~~i~~~~~~~~~iilvgnK 114 (162)
T cd04123 48 RIDLAIWDTAGQERYHA-----LGPI------Y-YRDADGAILVYDITD-ADSFQKVKKWIKELKQMRGNNISLVIVGNK 114 (162)
T ss_pred EEEEEEEECCCCCCCCC-----CCHH------H-EECCCEEEEEEECCC-HHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 99999995899730355-----6313------3-011445799963899-899999999999999876999746866332
Q ss_pred CCCCC----CHHHHHHHHHHHCCCEEEEE--CCCCCCCC
Q ss_conf 45787----06999999999769889997--58981325
Q gi|254780709|r 266 MDGTA----RGGGLIPIVVTHKIPVYFLG--VGEGINDL 298 (321)
Q Consensus 266 lD~ta----~~G~~ls~~~~~~~Pi~fig--~Ge~i~Dl 298 (321)
.|-.. ..=-+.+.+...+.|...++ +|++|+++
T Consensus 115 ~Dl~~~r~v~~~e~~~~a~~~~~~y~e~Sak~g~nV~e~ 153 (162)
T cd04123 115 IDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEEL 153 (162)
T ss_pred CCCHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf 132540888999999999982998999812788198999
No 364
>CHL00071 tufA elongation factor Tu
Probab=96.26 E-value=0.0081 Score=40.07 Aligned_cols=130 Identities=17% Similarity=0.266 Sum_probs=68.4
Q ss_pred CCCCCE-EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 667412-3113544444247899999998522674267743451245688999997530353212235866124542289
Q gi|254780709|r 108 SHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 108 ~~~p~v-il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
+.+|++ |.++|==-+||||.++-|.+.+...+..-+- +....+++.. -+.-|+.+ |.+..
T Consensus 8 ~~k~~vni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~------~~~~~D~~~e-Er~rGiTi-------d~~~~----- 68 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAANGGAKGK------KYDEIDSAPE-EKARGITI-------NTAHV----- 68 (409)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHH------HHHHCCCCHH-HHHCCCEE-------EECEE-----
T ss_conf 89986999999545883999999986453004513343------1553237976-87369448-------80248-----
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHCCCCEEE--
Q ss_conf 9996514875998654333211577899998998763022234301123102335225--778999876435897699--
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVAGTTGLI-- 262 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~~~~g~I-- 262 (321)
++...++.+.+||++|.-..=.|++.- ....|-.+||+||..|-- -.+.+.. ...+++.-+|
T Consensus 69 -~~et~~~~~~~iD~PGH~~fv~nmi~G------------as~aD~alLVV~A~~G~~~QTkEHl~l-~~~lgV~~~IVa 134 (409)
T CHL00071 69 -EYETENRHYAHVDCPGHADYVKNMITG------------AAQMDGAILVVSAADGPMPQTKEHILL-AKQVGVPNIVVF 134 (409)
T ss_pred -EEECCCEEEEEEECCCHHHHHHHHHHH------------HCCCCCEEEEEECCCCCCCCHHHHHHH-HHHCCCCCEEEE
T ss_conf -996287599998679678999998752------------301581289998687885004999999-997399936555
Q ss_pred EECCCCCC
Q ss_conf 96545787
Q gi|254780709|r 263 MTKMDGTA 270 (321)
Q Consensus 263 ~TKlD~ta 270 (321)
+||+|.-.
T Consensus 135 vnKmD~v~ 142 (409)
T CHL00071 135 LNKEDQVD 142 (409)
T ss_pred EECCCCCC
T ss_conf 55679854
No 365
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.26 E-value=0.018 Score=37.68 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=47.3
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1231135444442478999999985226742677434512456889999975303532-122358661245422899996
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~~~~dp~~v~~~a~~~a~ 190 (321)
..++|+||+|+|||..+--||.++....++...+.|=.|-- -...+.-+|.|- |.. .+..-...+++ +
T Consensus 4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~-----~~~v~~l~g~~~gyvg---~~~~G~l~~~v---~ 72 (168)
T pfam07724 4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYME-----EHSVSRLIGAPPGYVG---YEEGGQLTEAV---R 72 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC-----HHHHHHHCCCCCCCCC---CCCCCCHHHHH---H
T ss_conf 79998898998999999999999679853448855756542-----5699987058998726---24265078999---8
Q ss_pred HHCCCEEEEECCCCCCCH
Q ss_conf 514875998654333211
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNN 208 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~ 208 (321)
.+.+-||++|--...|.+
T Consensus 73 ~~p~~VillDEIeKa~~~ 90 (168)
T pfam07724 73 RKPYSIVLIDEIEKAHPG 90 (168)
T ss_pred HCCCCEEEEHHHHHHCHH
T ss_conf 389848986577665899
No 366
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.014 Score=38.52 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=39.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 4123113544444247899999998522674267743451245688999997
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a 162 (321)
..-|.|=|+-|+||||-+..|+.++..+|.+|.+..=-+. --.-+.++.+.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~-~~ige~iR~~l 53 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGG-TPIGEKIRELL 53 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHHH
T ss_conf 6299997888898899999999999982980799868999-86999999997
No 367
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0095 Score=39.60 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=36.5
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-------------CCHHHH---HHHHHHHHHHCCC
Q ss_conf 412311354444424789999999852267426774345-------------124568---8999997530353
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-------------FRSAAI---DQLKIWADRTSAD 168 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt-------------fR~aA~---eQL~~~a~~~~v~ 168 (321)
-.++.++|+|||||||.+-=|+-.++-..-+|.+...|. +..... .+++.+..++|+=
T Consensus 33 GE~v~IiG~nGsGKSTL~k~l~Gll~P~~G~V~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~vG~v 106 (304)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIYFDEKNKEKKKVVEDPVIKLKFRKKLKKIKEIRRRVGVV 106 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEE
T ss_conf 98999987999859999999966999887169994245434554311343022134566666689877337999
No 368
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=96.22 E-value=0.01 Score=39.39 Aligned_cols=131 Identities=19% Similarity=0.265 Sum_probs=65.7
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|+++|+.||||||-+-.+. . |.-+ + -+|.++ -+...+ ..++
T Consensus 2 il~lG~~~~GKTsll~~~~----~-~~~~-----~-----------------~~pTig----~~~~~i--------~~~~ 42 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQ----L-GEVV-----T-----------------TIPTIG----FNVETV--------TYKN 42 (158)
T ss_pred EEEECCCCCCHHHHHHHHH----C-CCCC-----C-----------------CCCCCC----CCEEEE--------EECC
T ss_conf 9999999998999999997----0-9967-----7-----------------578488----246999--------9898
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHC--------CCCEEEEE
Q ss_conf 87599865433321157789999899876302223430112310233522577899-9876435--------89769996
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVA--------GTTGLIMT 264 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~--------~~~g~I~T 264 (321)
+.+-+-||||+-.... +. ..+.. ..+-.++|+|++-- +.++.+ ..|++.+ |+ =++.+
T Consensus 43 ~~~~iwD~~G~e~~r~-~~----------~~y~~-~~~~ii~VvD~sd~-~~~~~~~~~l~~~l~~~~~~~~pi-liv~N 108 (158)
T cd04151 43 LKFQVWDLGGQTSIRP-YW----------RCYYS-NTDAIIYVVDSTDR-DRLGTAKEELHAMLEEEELKGAVL-LVFAN 108 (158)
T ss_pred EEEEEEECCCCCCCCH-HH----------HHHCC-CCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHHHCCCCE-EEEEE
T ss_conf 8999996798624462-78----------87466-78899999745787-899999999999983465369819-99997
Q ss_pred CCCCCCCH-----HHHHHHHHHHCCCEEEEE----CCCCCCC
Q ss_conf 54578706-----999999999769889997----5898132
Q gi|254780709|r 265 KMDGTARG-----GGLIPIVVTHKIPVYFLG----VGEGIND 297 (321)
Q Consensus 265 KlD~ta~~-----G~~ls~~~~~~~Pi~fig----~Ge~i~D 297 (321)
|.|-.... -..+......+.++.|+. +||+|++
T Consensus 109 K~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~tSA~tG~gV~e 150 (158)
T cd04151 109 KQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 667765779999999985987416996899967878939999
No 369
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.021 Score=37.25 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=56.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
-.++.++|+||+||||.+-=|+..+....-+|.+-..|..+. ..+.+.+.++. +..-.+..- -+-++..|-
T Consensus 25 Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~--v~QLSgGqk---qrv~iA~al 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL----PLEELRRRIGY--VPQLSGGQR---QRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC----CHHHHHHCCCC--CCCCCHHHH---HHHHHHHHH
T ss_conf 979999878899989999999588479962899999999979----99999940608--766886999---999999999
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 51487599865433321157789999899876
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~ 222 (321)
..+-+++|.|-.-. ..|.....++.++.+-+
T Consensus 96 ~~~p~ililDEPts-gLD~~~~~~l~~~i~~l 126 (157)
T cd00267 96 LLNPDLLLLDEPTS-GLDPASRERLLELLREL 126 (157)
T ss_pred HCCCCEEEEECCCC-CCCHHHHHHHHHHHHHH
T ss_conf 70999999969876-68999999999999999
No 370
>PRK12735 elongation factor Tu; Reviewed
Probab=96.21 E-value=0.023 Score=36.93 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=70.8
Q ss_pred CCCCCE-EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 667412-3113544444247899999998522674267743451245688999997530353212235866124542289
Q gi|254780709|r 108 SHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 108 ~~~p~v-il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
..+|++ |.++|==-+||||+++.|...+...|..-.-...+ .+++..--+ -|+.+ |.+-..
T Consensus 8 ~~kp~ini~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~------~D~~~eEr~-rGiTi-------d~~~~~---- 69 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQ------IDNAPEEKA-RGITI-------NTSHVE---- 69 (396)
T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHH------HCCCHHHHC-CCEEE-------EEEEEE----
T ss_conf 899834999994268858989999861454524643122122------116656743-77379-------856999----
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHCCCCEE-E-
Q ss_conf 9996514875998654333211577899998998763022234301123102335225--77899987643589769-9-
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVAGTTGL-I- 262 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~~~~g~-I- 262 (321)
+...++.+-+||.+|. .+ . +++.+. .....|-.+||+||..|-- ..+.+. ....+++.-+ |
T Consensus 70 --fet~~~~~~~iD~PGH--e~--f------iknMI~--Ga~~aD~alLVV~A~~G~~~QTrEHl~-l~~~lgv~~~iV~ 134 (396)
T PRK12735 70 --YETANRHYAHVDCPGH--AD--Y------VKNMIT--GAAQMDGAILVVSAADGPMPQTREHIL-LARQVGVPYIVVF 134 (396)
T ss_pred --EECCCEEEEEEECCCH--HH--H------HHHHHH--CCCCCCEEEEEEECCCCCCHHHHHHHH-HHHHHCCCEEEEE
T ss_conf --9739805999836866--88--7------766641--004256799999868787531699999-9998399858999
Q ss_pred EECCCCCC
Q ss_conf 96545787
Q gi|254780709|r 263 MTKMDGTA 270 (321)
Q Consensus 263 ~TKlD~ta 270 (321)
+||+|-..
T Consensus 135 vnK~D~v~ 142 (396)
T PRK12735 135 LNKCDMVD 142 (396)
T ss_pred EECCCCCC
T ss_conf 98758888
No 371
>KOG2825 consensus
Probab=96.20 E-value=0.0041 Score=42.15 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=34.3
Q ss_pred CCCCEEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 674123113-54444424789999999852267426774345
Q gi|254780709|r 109 HRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 109 ~~p~vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
.+...|.|| |--||||||+.+-||.++.+.+.+|++|++|.
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDP 57 (323)
T KOG2825 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDP 57 (323)
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 350369997676776765312689999861688647861685
No 372
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.19 E-value=0.13 Score=31.53 Aligned_cols=170 Identities=20% Similarity=0.303 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999987852010012100013667412311354444424789999999852267426774345124568899999753
Q gi|254780709|r 85 LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 (321)
Q Consensus 85 ~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~ 164 (321)
+..|.+.+.+.|.+.... .......|--+.++|-.-+||.|-+ +.+..+-+ + ++ .| .
T Consensus 153 i~dLld~v~~~l~~~e~~-~~~~~~~~ikiaiiGrPNvGKSsLi----N~ilgeeR-~-Iv-~~---------------~ 209 (444)
T COG1160 153 IGDLLDAVLELLPPDEEE-EEEEETDPIKIAIIGRPNVGKSSLI----NAILGEER-V-IV-SD---------------I 209 (444)
T ss_pred HHHHHHHHHHHCCCCCCC-CCCCCCCCEEEEEEECCCCCCHHHH----HHHCCCCE-E-EE-CC---------------C
T ss_conf 899999999756774334-4435677508999927878705888----77506825-9-84-59---------------9
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC---CCCH-----HHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 0353212235866124542289999651487599865433---3211-----5778999989987630222343011231
Q gi|254780709|r 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR---LHNN-----SILMAGIGKMIRVLKRLDPHAPHSVLQV 236 (321)
Q Consensus 165 ~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR---~~~~-----~~lm~EL~ki~~v~~~~~~~~p~~~~lV 236 (321)
-|. --|+..+-+ ..++..+++|||||- .... -..++-++.|.+ .+-++||
T Consensus 210 aGT-------TRD~I~~~~------e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~---------a~vvllv 267 (444)
T COG1160 210 AGT-------TRDSIDIEF------ERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIER---------ADVVLLV 267 (444)
T ss_pred CCC-------CCCCEEEEE------EECCEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHH---------CCEEEEE
T ss_conf 986-------220331258------998818999987787746641242688750546767865---------6889999
Q ss_pred CCCCCCHH--HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH---------HHHHHHCCCEEEEECC--CCCCCCC
Q ss_conf 02335225--77899987643589769996545787069999---------9999976988999758--9813255
Q gi|254780709|r 237 LDATTGQN--ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI---------PIVVTHKIPVYFLGVG--EGINDLE 299 (321)
Q Consensus 237 lda~~gq~--~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~l---------s~~~~~~~Pi~fig~G--e~i~Dl~ 299 (321)
+||+-|-. -...|..-.+.---.=+++.|-|.-.+--..+ -..+.-..|+.||+.+ ++++.|-
T Consensus 268 iDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~ 343 (444)
T COG1160 268 IDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLF 343 (444)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHH
T ss_conf 9888783688999999999758974999975325785166799999999987221367727999704787727889
No 373
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.19 E-value=0.0027 Score=43.41 Aligned_cols=41 Identities=29% Similarity=0.448 Sum_probs=35.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 41231135444442478999999985226742677434512
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
-.++.|+|+||.|||||+-=|.-.++-.+-+|-+..-|.||
T Consensus 50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~ 90 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90 (325)
T ss_pred CCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCH
T ss_conf 86898875888860333989738603688758745868523
No 374
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.038 Score=35.38 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=68.8
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH--HHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245--4228
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL--AYEA 185 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v--~~~a 185 (321)
..-|+-++|.|+.|+||++.+-.+|.++.-....- .-+|..-+.- ++-..+..-++-++..+..+....| +++-
T Consensus 19 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~-~~~Cg~C~sC---~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l 94 (328)
T PRK05707 19 GRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQG-GGACGSCKGC---QLLAAGSHPDNFVLEPEEADKPIKVDQVREL 94 (328)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCHHH---HHHHCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 98220464479998679999999999984899999-8999888899---9987589998799842666776979999999
Q ss_pred HHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99996----5148759986543332115778999989987630222343011231023352257789998
Q gi|254780709|r 186 FKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 (321)
Q Consensus 186 ~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~ 251 (321)
++++. ..++-|++||-|-+|..... +.+=|..+..|..+++.+=+..-+.....++.
T Consensus 95 ~~~~~~~~~~g~~KV~iI~~Ae~m~~~Aa---------NALLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 155 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAA---------NALLKSLEEPSGQTVLLLISHQPSRLLPTIKS 155 (328)
T ss_pred HHHHHHCCCCCCCEEEEEEHHHHHCHHHH---------HHHHHHHHCCCCCEEEEEEECCHHHCHHHHHH
T ss_conf 99983176678957999502877389999---------99999850789875999860993448258874
No 375
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0062 Score=40.90 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=34.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 4123113544444247899999998522674267743451245688999997530353
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~ 168 (321)
-.++.++|+||+||||.+-=|+-.++-..-+|.+-..+..---.-..++.+..++|.=
T Consensus 20 Ge~vaiiG~sGsGKSTLl~~l~GLl~P~~G~i~~~g~~i~~~~~~~~~~~lr~~vG~V 77 (276)
T PRK13634 20 GSYVAIIGHTGSGKSTLLQHLNGLLKPTKGTVTIGERVITAGKKNKKLKPLRKKVGIV 77 (276)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHCEEEE
T ss_conf 9899999999969999999997499988749999999886888666689987326899
No 376
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.17 E-value=0.0032 Score=42.91 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC-CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99999998785201001210001366-7412311354444424789999999852267426774345
Q gi|254780709|r 84 VLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 84 i~~~l~~~L~~~L~~~~~~~~~~~~~-~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
++..++..+.+..+....--+.+++- +-.++.++||||+||||++-=|+-.++-..-+|.+--.|.
T Consensus 19 ~~~~~~~~l~K~yg~~~al~~vsf~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~I~v~G~~~ 85 (236)
T cd03267 19 LIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP 85 (236)
T ss_pred HHHHHHHHEECCCCCEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEEC
T ss_conf 8898664524554998986680578848959999999983099999999649488715999999985
No 377
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.17 E-value=0.0076 Score=40.28 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=48.6
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 74123113544444247899999998522674267743451245688999997530353212235866124542289999
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
+-.++.++||||+||||++-=|+-.++-..-++-+ |..++.-..|- +.+ .|..- -+=++..+
T Consensus 24 ~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~---~g~~~~~~pq~--------~~L----SGGqr---QRv~iAra 85 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW---DGITPVYKPQY--------IDL----SGGEL---QRVAIAAA 85 (177)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE---CCCCEECCCCC--------CCC----CHHHH---HHHHHHHH
T ss_conf 99899998999999999999996886788994666---68612215551--------507----98999---99999999
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 6514875998654333211577899998998
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~ 220 (321)
-.++.|++|.|-.= .+.|.....++.++.+
T Consensus 86 l~~~p~lllLDEPt-s~LD~~~r~~i~~~ik 115 (177)
T cd03222 86 LLRNATFYLFDEPS-AYLDIEQRLNAARAIR 115 (177)
T ss_pred HHCCCCEEEECCCC-CCCCHHHHHHHHHHHH
T ss_conf 82399999974886-5389999999999999
No 378
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.17 E-value=0.018 Score=37.59 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=55.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC----CH-------------------------------HHH
Q ss_conf 12311354444424789999999852-2674267743451----24-------------------------------568
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTF----RS-------------------------------AAI 155 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~-~g~kV~lva~Dtf----R~-------------------------------aA~ 155 (321)
.+.-|+|+||+|||||.-=+...+.- +|+=-....-+++ |+ -+.
T Consensus 29 ~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~ 108 (300)
T COG4152 29 EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ 108 (300)
T ss_pred EEEEEECCCCCCCCCHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 17876658889732339998645786676689858510055565406581540667567199999999986499689999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH--HHHHCCCEEEEECC--CCCCCHHHHHHH
Q ss_conf 899999753035321223586612454228999--96514875998654--333211577899
Q gi|254780709|r 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTA--GRLHNNSILMAG 214 (321)
Q Consensus 156 eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~--a~~~~~DvvliDTA--GR~~~~~~lm~E 214 (321)
.++..|-++.++..+....-.+-+.=-.+-++. +-.+.-++||.|-. |=.+.|.++..+
T Consensus 109 ~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~ 171 (300)
T COG4152 109 KKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD 171 (300)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 999999996065654442477753011678999999852887799668866887232999999
No 379
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.17 E-value=0.016 Score=37.94 Aligned_cols=93 Identities=17% Similarity=0.278 Sum_probs=50.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH----HHHHHHHH
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245----42289999
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL----AYEAFKQA 189 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v----~~~a~~~a 189 (321)
|+|+|+.||||+|-+.+||..| |. +-+-+.|.+|.....+- .++.++.--+-.+.. =|..+ +++.+...
T Consensus 3 iillG~PGsGKgTqa~~la~~~---~~-~~is~GdllR~~i~~~s-~~g~~i~~~~~~G~l--Vpd~i~~~lv~~~l~~~ 75 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY---GI-PHISTGDMLRAAIKAGT-ELGKEAKSYMDAGEL--VPDEIVIGLVKERLAQP 75 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHH---CC-EEECHHHHHHHHHHCCC-HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCC
T ss_conf 9998999998799999999986---99-17868899999987399-889999999977987--78899999999998365
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 65148759986543332115778999
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNNSILMAGI 215 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~~~lm~EL 215 (321)
.. ..-.|+|=--|.......++++
T Consensus 76 ~~--~~G~IlDGfPRt~~Qa~~l~~~ 99 (215)
T PRK00279 76 DC--ANGFLLDGFPRTIPQAEALDEM 99 (215)
T ss_pred CC--CCEEEEECCCCCHHHHHHHHHH
T ss_conf 65--5707986899987999999999
No 380
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.17 E-value=0.0027 Score=43.45 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=33.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
Q ss_conf 31135444442478999999985226742677434512456889
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQ 157 (321)
|+|+||.||||+|-+..||.+|. =+-+.+.|.+|.+....
T Consensus 3 iillGpPGsGKgT~a~~l~~~~~----~~hiStGdllR~~i~~~ 42 (225)
T PTZ00088 3 IVLFGAPGVGKGTFAEILSKKEK----LKHINMGNILRDEIKKE 42 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC----CEEECHHHHHHHHHHCC
T ss_conf 99989999987999999999879----90687899999999739
No 381
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0057 Score=41.18 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=28.9
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 41231135444442478999999985226742677434512
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
-.++.++|+||+||||.+-=|+-.++-..-+|.+-.-|+.+
T Consensus 31 Ge~~aiiG~NGsGKSTLl~~l~Gl~~p~~G~I~i~G~~i~~ 71 (273)
T PRK13647 31 GSKTAILGPNGAGKSTLLLHLNGIYTAQRGRVKVMGKVVNE 71 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC
T ss_conf 98999999999759999999966988886199999999996
No 382
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.15 E-value=0.01 Score=39.43 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHH---CCCCEE--------------EEEC
Q ss_conf 99999987852010012100013667412311354444424789999999852---267426--------------7743
Q gi|254780709|r 85 LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVM--------------LAAG 147 (321)
Q Consensus 85 ~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~---~g~kV~--------------lva~ 147 (321)
+..+++.|.+.+.+ ..+..+.++.||.|+|||||+--||.-+.- +=+.+. ..-.
T Consensus 28 V~eV~~WL~~~~~~---------~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~~q~~d~~g~~ 98 (490)
T pfam03215 28 IAEVDHWLKAVFLE---------SNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNECQKPDFRGDC 98 (490)
T ss_pred HHHHHHHHHHHHCC---------CCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCCCCCCC
T ss_conf 99999999998547---------777318998798998899999999997596899814865456775022101212345
Q ss_pred CCCCHHHHHHHHHHHH---HHC-------------CCCCCCCCCCCCHHHHHHHHHHHHH-HC-CCEEEEEC
Q ss_conf 4512456889999975---303-------------5321223586612454228999965-14-87599865
Q gi|254780709|r 148 DTFRSAAIDQLKIWAD---RTS-------------ADFVCSEIGSDAAALAYEAFKQAQA-KK-VDVLIIDT 201 (321)
Q Consensus 148 DtfR~aA~eQL~~~a~---~~~-------------v~~~~~~~~~dp~~v~~~a~~~a~~-~~-~DvvliDT 201 (321)
.+|.....+|.+.|-. +.+ |+=+......|+.+ -++++..+-. .+ .-+|+|=|
T Consensus 99 ~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~-fr~~L~~~L~s~~~~PlV~IiS 169 (490)
T pfam03215 99 IVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEK-FREVIREVLQSIWHLPLIFCLT 169 (490)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHH-HHHHHHHHHHHCCCCCEEEEEE
T ss_conf 7666637777678876223356544578873599996588744236699-9999999997089998799997
No 383
>PRK13409 putative ATPase RIL; Provisional
Probab=96.14 E-value=0.011 Score=39.11 Aligned_cols=28 Identities=46% Similarity=0.709 Sum_probs=22.4
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHH-HCC
Q ss_conf 1231135444442478999999985-226
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAG 139 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~-~~g 139 (321)
.++.++|+||+||||.+-=||-.++ ..|
T Consensus 366 EiigIvG~NGaGKTTLlKiLaG~lkPd~G 394 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFVKLLAGVLKPDEG 394 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 48999888888789999998288778874
No 384
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.14 E-value=0.057 Score=34.14 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=29.5
Q ss_pred EECCCCCCCCHHHHHHHHH-HHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 3113544444247899999-998522-674267743451245688999997530
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLS-KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT 165 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA-~~~~~~-g~kV~lva~DtfR~aA~eQL~~~a~~~ 165 (321)
+++++|+|+|||.+..--+ +.+.++ +....++-+ ..|+=+.+|.+.+-+..
T Consensus 17 ~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~-Pt~aL~~q~~~~~~~~~ 69 (167)
T pfam00270 17 VLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLA-PTRELAEQIYEELKKLG 69 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC-CHHHHHHHHHHHHHHHH
T ss_conf 899889997589999999999987477898799990-60888889998864321
No 385
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=96.12 E-value=0.0069 Score=40.58 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=53.4
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---------------------CCHHHHHHHHHHHHHHCCC
Q ss_conf 7412311354444424789999999852267426774345---------------------1245688999997530353
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---------------------FRSAAIDQLKIWADRTSAD 168 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt---------------------fR~aA~eQL~~~a~~~~v~ 168 (321)
+-.++.|+||||+|||||+-=|+-.++-..-+|.+-.-|. ..--+.|+|..++...|++
T Consensus 30 ~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG~v~i~G~~i~~~~~~~r~~iG~~pq~~~l~~~ltv~e~l~~~~~~~g~~ 109 (304)
T PRK13537 30 PGECFGLLGPNGAGKTTTLKMLLGLTHPDAGTISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 109 (304)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99599999998972999999997795689768999999887562888735599917765688989999999999972999
Q ss_pred CCCC-------------C-CCCCCHHHH----H--HHHHHHHHHCCCEEEEE--CCCCCCCHH
Q ss_conf 2122-------------3-586612454----2--28999965148759986--543332115
Q gi|254780709|r 169 FVCS-------------E-IGSDAAALA----Y--EAFKQAQAKKVDVLIID--TAGRLHNNS 209 (321)
Q Consensus 169 ~~~~-------------~-~~~dp~~v~----~--~a~~~a~~~~~DvvliD--TAGR~~~~~ 209 (321)
--.. . ....++.-. + =++..|-.++-++++.| |+|=.+...
T Consensus 110 ~~~~~~~~~~ll~~~~L~~~~~~~~~~lSgG~kqrl~ia~al~~~P~lliLDEPT~GLDp~~r 172 (304)
T PRK13537 110 AAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 172 (304)
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 999999999999977995685673667999999999999998379999999388667899999
No 386
>PRK07429 phosphoribulokinase; Provisional
Probab=96.12 E-value=0.0078 Score=40.21 Aligned_cols=110 Identities=25% Similarity=0.344 Sum_probs=70.8
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH----------------HH------HHHHHHHH--
Q ss_conf 3667412311354444424789999999852267426774345124----------------56------88999997--
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS----------------AA------IDQLKIWA-- 162 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~----------------aA------~eQL~~~a-- 162 (321)
-+++|.+|-+.|-.||||||-+-+|+..|.. .+|.+++.|.|-- .| .+||+.+.
T Consensus 4 m~~rP~IIGIAGgSGSGKTTv~r~I~~~fg~--~~VtvI~~DdYhk~dr~~r~~~~~t~lhP~And~dLl~e~L~~Lk~G 81 (331)
T PRK07429 4 MPDRPVIIGVAGDSGCGKSTFLRRLADLFGE--ELVTVICLDDYHSLDRKQRKEIGITALDPRANNFDLMYEQLKALKTG 81 (331)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHCC
T ss_conf 9999989998578877899999999998388--87799947867778878898718987896400599999999999859
Q ss_pred HHHCCCCCCCCCCC-C------CHHH-HHHHHHHH----HHHCCCE-EEEECCC--------------CCCCHHHHHHHH
Q ss_conf 53035321223586-6------1245-42289999----6514875-9986543--------------332115778999
Q gi|254780709|r 163 DRTSADFVCSEIGS-D------AAAL-AYEAFKQA----QAKKVDV-LIIDTAG--------------RLHNNSILMAGI 215 (321)
Q Consensus 163 ~~~~v~~~~~~~~~-d------p~~v-~~~a~~~a----~~~~~Dv-vliDTAG--------------R~~~~~~lm~EL 215 (321)
+.+..|+|....+. + |..| ..+++--+ ..+-+|+ |.+||.- |-+.-+.-++++
T Consensus 82 k~I~~PvYdh~tg~~~~~~~I~P~~vIIvEGLh~L~~~~lR~l~DlKIFVD~d~diR~~rRI~RDv~ERG~s~E~Vl~qi 161 (331)
T PRK07429 82 QPILKPIYNHETGKIDPPEYIKPNKIVVVEGLHPLYDERVRDLYDFKVYLDPPDEVKIAWKIKRDMAERGHTYEDVLAEI 161 (331)
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCEEEEECCHHCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 97256523564787788666068867999161212879899754937996487889999988877866189999999999
Q ss_pred HHH
Q ss_conf 989
Q gi|254780709|r 216 GKM 218 (321)
Q Consensus 216 ~ki 218 (321)
.+-
T Consensus 162 ~~R 164 (331)
T PRK07429 162 EKR 164 (331)
T ss_pred HHC
T ss_conf 851
No 387
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.12 E-value=0.024 Score=36.82 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=30.2
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 41231135444442478999999985226742677434512
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
-.++.++|+||+||||.+-=++.++....-+|.+-.-|...
T Consensus 25 Ge~~~liG~nGsGKTTLl~~i~G~~~~~~G~I~~~g~~i~~ 65 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS 65 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf 97999998999889999999957989987289999999896
No 388
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.12 E-value=0.08 Score=33.13 Aligned_cols=139 Identities=20% Similarity=0.321 Sum_probs=69.9
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
-|+++|..|||||+-+-.+...--... +..-++++++... +-. ..+
T Consensus 2 Ki~vvG~~~vGKTsli~~~~~~~f~~~---------------------~~~Tig~d~~~~~-------~~~------~~~ 47 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN---------------------YKSTIGVDFKSKT-------IEI------DGK 47 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC---------------------CCCCCCEEEEEEE-------EEE------CCE
T ss_conf 899999699689999999970999998---------------------4886664799999-------999------999
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH----HHHCC--CC-EEEEEC
Q ss_conf 487599865433321157789999899876302223430112310233522577899987----64358--97-699965
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF----HAVAG--TT-GLIMTK 265 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F----~~~~~--~~-g~I~TK 265 (321)
.+.+-|.||||-- +...+.+. +. ...+-.++|.|.+. .++++.++.+ .+..+ +. -+|-+|
T Consensus 48 ~~~l~iwDt~G~e--------~~~~l~~~---~~-~~~d~~ilv~d~~~-~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK 114 (159)
T cd00154 48 TVKLQIWDTAGQE--------RFRSITPS---YY-RGAHGAILVYDITN-RESFENLDKWLKELKEYAPENIPIILVGNK 114 (159)
T ss_pred EEEEEEEECCCCH--------HHHHHHHH---HH-HHCCEEEEECCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 9999999789826--------57788999---97-54127567244898-899999999999999868988826999974
Q ss_pred CCCC-C---CHHHHHHHHHHHCCCEEEEEC--CCCCCCC
Q ss_conf 4578-7---069999999997698899975--8981325
Q gi|254780709|r 266 MDGT-A---RGGGLIPIVVTHKIPVYFLGV--GEGINDL 298 (321)
Q Consensus 266 lD~t-a---~~G~~ls~~~~~~~Pi~fig~--Ge~i~Dl 298 (321)
.|-. . ..--+...+...+.|...++. |++|+++
T Consensus 115 ~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~~~~i~~~ 153 (159)
T cd00154 115 IDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEEL 153 (159)
T ss_pred CCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 563011689999999999986997999876888198999
No 389
>TIGR00606 rad50 rad50; InterPro: IPR004584 Rad50 is involved in recombination, recombinational repair, and/or non-homologous end joining. It is a component of an exonuclease complex with MRE11 homologs. The Saccharomyces cerevisiae Rad50/MRE11 complex possesses single-stranded endonuclease activity and ATP-dependent double-strand-specific exonuclease activity. Rad50 provides an ATP-dependent control of MRE11 by unwinding and repositioning DNA ends into the MRE11 active site. This family is distantly related to the SbcC family of bacterial proteins. When the N- and C-terminal globular regions of Rad50 from Pyrococcus furiosus P58301 from SWISSPROT are co-expressed in Escherichia coli, they spontaneously associate to form a stable complex that possesses ATP-binding and weak ATP-hydrolysing activities. The structure formed is known as the Rad50 catalytic domain (Rad50cd1). In the presence of ATP, two Rad50cd1 molecules interact via their ATP-binding and highly conserved 'signature' motifs to form a dimer. As ATP is buried deep within this dimer interface, the two Rad50cd1 molecules may have to completely disengage after ATP hydrolysis to allow the release of ADP before binding of a new ATP molecule. ATP binding is also accompanied by a 30° rotation of two distinct domains within each Rad50cd1 part of the dimer. This rotation and dimerisation creates a positively charged surface which, potentially, could provide a DNA-binding site capable of accommodating two DNA molecules. The Mre11-docking site within Rad50 has been mapped to two 40-residue heptad-repeat sequences that lie adjacent to the N- and C-terminal ATPase segments. A distinct region within this domain forms a conserved hydrophobic patch that is believed to be the actual Mre11-binding site and lies immediately adjacent to the putative DNA-binding site of Rad50. As Rad50 dimerises in the presence of ATP and forms a stoichiometric complex with Mre11 (one Mre11 subunit binding to one Rad50 subunit), it is possible that the MR complex forms a closely coordinated DNA-binding unit that has the potential to act on two DNA molecules simultaneously. Within this unit, ATP-dependent control of nuclease action might be achieved via Rad50 unwinding or repositioning DNA ends into the active-site of Mre11 . ; GO: 0005524 ATP binding, 0006281 DNA repair, 0030870 Mre11 complex.
Probab=96.10 E-value=0.002 Score=44.33 Aligned_cols=20 Identities=55% Similarity=0.758 Sum_probs=10.8
Q ss_pred ECCCCCCCCHHHHHHHHHHH
Q ss_conf 11354444424789999999
Q gi|254780709|r 115 LVVGVNGVGKTTVIGKLSKK 134 (321)
Q Consensus 115 l~vG~nG~GKTTT~aKLA~~ 134 (321)
+++||||+||||+|-=|-+.
T Consensus 32 ~l~GPNG~GKTT~IE~L~y~ 51 (1328)
T TIGR00606 32 LLVGPNGAGKTTIIEALKYV 51 (1328)
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 01277887525898754332
No 390
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=96.10 E-value=0.033 Score=35.85 Aligned_cols=132 Identities=22% Similarity=0.293 Sum_probs=69.9
Q ss_pred CCCCCE-EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC---------CCCCC-C
Q ss_conf 667412-311354444424789999999852267426774345124568899999753035321---------22358-6
Q gi|254780709|r 108 SHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---------CSEIG-S 176 (321)
Q Consensus 108 ~~~p~v-il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~---------~~~~~-~ 176 (321)
.++|++ |.++|-=-.||||.++-|.+.+..- | ....++++.-+...|-.-+ ..+.. .
T Consensus 3 ~~K~~lni~~~GhVD~GKSTL~G~Ll~~~~~v---------~---~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rG 70 (449)
T PTZ00336 3 KDKVHMNLVVVGHVDAGKSTATGHLIYKCGGI---------D---KRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERG 70 (449)
T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHCCCC---------C---HHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCC
T ss_conf 98864399999277896888899999874884---------7---89999999999871875143254512772232287
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC----------HHHH
Q ss_conf 612454228999965148759986543332115778999989987630222343011231023352----------2577
Q gi|254780709|r 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG----------QNAL 246 (321)
Q Consensus 177 dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g----------q~~~ 246 (321)
-...+++. ++...+.-+.+||+.|.-..=.|++.-. +..|-.+||+||..| |- .
T Consensus 71 iTid~~~~---~f~t~~~~~~iiD~PGH~~fi~nmi~Ga------------s~aD~aiLVVdA~~G~~e~g~~~~gQT-r 134 (449)
T PTZ00336 71 ITIDIALW---KFESPKSVFTIIDAPGHRDFIKNMITGT------------SQADAAILMIDSTHGGFEAGISKDGQT-R 134 (449)
T ss_pred EEEEEEEE---EEECCCEEEEEEECCCHHHHHHHHHHHH------------CCCCEEEEEEECCCCCEECCCCCCCCC-H
T ss_conf 58986799---9974984899986894688899999765------------006767999987877410355667753-9
Q ss_pred HHHHHHHHHCCCCEEE--EECCCC
Q ss_conf 8999876435897699--965457
Q gi|254780709|r 247 RQVEMFHAVAGTTGLI--MTKMDG 268 (321)
Q Consensus 247 ~~a~~F~~~~~~~g~I--~TKlD~ 268 (321)
+.+.. ...+++..+| ++|||.
T Consensus 135 eHl~i-~~~Lgv~~iiV~vNKmD~ 157 (449)
T PTZ00336 135 EHALL-AFTLGVKQMVVCCNKMDD 157 (449)
T ss_pred HHHHH-HHHCCCCEEEEEEECCCC
T ss_conf 99999-986699779999862015
No 391
>PRK05636 replicative DNA helicase; Provisional
Probab=96.09 E-value=0.052 Score=34.42 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=31.8
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECC
Q ss_conf 741231135444442478999999985-226742677434
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGD 148 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~kV~lva~D 148 (321)
+...|.+.|-+|+|||+-+--+|.... ++|+.|++.+..
T Consensus 266 ~G~LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLE 305 (507)
T PRK05636 266 GGQMIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLE 305 (507)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 3567999737878668999999999998769937997156
No 392
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=96.08 E-value=0.07 Score=33.51 Aligned_cols=179 Identities=20% Similarity=0.249 Sum_probs=97.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC--CCCC-CCCCCCCCEEECCCCCCC
Q ss_conf 9999999997388989999999999987512789989999999998785201001--2100-013667412311354444
Q gi|254780709|r 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS--KPFN-WDFSHRPHVILVVGVNGV 122 (321)
Q Consensus 46 leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~L~~~~--~~~~-~~~~~~p~vil~vG~nG~ 122 (321)
.+.+-..|-+..|.++..++..+- -..+..+..+.+....+.+.+++.... +... +..-+.|.-+.+||-+=+
T Consensus 161 ~~~~l~ll~~~ev~iDY~~~~~e~----d~~~~~~~~~~~~~~~~~L~~i~~~~~aq~~~~vl~~l~~g~k~ai~G~~Nv 236 (473)
T TIGR00450 161 RKSLLQLLAQVEVNIDYEEDDDEL----DQLELVSLNQKLEKIIAELKDILNSANAQRSKKVLEKLKDGFKLAIVGKPNV 236 (473)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCC----CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 999988888743102675457753----1120001789999999999999987641003458998408947999647887
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEEEC
Q ss_conf 424789999999852267426774345124568899999753035321223586612454228999-9651487599865
Q gi|254780709|r 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ-AQAKKVDVLIIDT 201 (321)
Q Consensus 123 GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~-a~~~~~DvvliDT 201 (321)
||..= =+-+.++.|. +++.-.|+ -+|.++. +..+|+-+=|+||
T Consensus 237 GKSSL----LNa~l~~DrA---------------------------iVS~~kGt-----TRD~vE~~~~L~G~~~~~lDT 280 (473)
T TIGR00450 237 GKSSL----LNALLKQDRA---------------------------IVSDIKGT-----TRDVVEGDFELNGILVKLLDT 280 (473)
T ss_pred CHHHH----HHHHHHCCCE---------------------------EEECCCCC-----CCCEEEEEEEECCEEEEEEEC
T ss_conf 57899----9987622870---------------------------55276688-----320442057774678998514
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHH-HHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 43-3321157789999899876302223430112310233522-577-89998764358976999654578
Q gi|254780709|r 202 AG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NAL-RQVEMFHAVAGTTGLIMTKMDGT 269 (321)
Q Consensus 202 AG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~-~~a~~F~~~~~~~g~I~TKlD~t 269 (321)
|| |-|.|.----=++|=.+.++ ..+.+++|+|+..+. ..- ++...+++.=.--=+++-|-|=.
T Consensus 281 AGiR~~~~~~E~~GiekS~~~i~-----~A~LVi~~~D~~~~~~~ddf~li~~~~k~~k~~~~V~NK~DL~ 346 (473)
T TIGR00450 281 AGIREHADKVERLGIEKSFKAIK-----QADLVIYVLDASQPLTKDDFELIITLNKKKKPLILVLNKIDLA 346 (473)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-----HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 67510200466776899899986-----0573478887478988105899999732179779997350165
No 393
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=96.08 E-value=0.0043 Score=42.03 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=30.4
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 1231135444442478999999985226742677434
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D 148 (321)
.++.+|||||+||.|-+|=|-|+|.=.+=.|+|=.-+
T Consensus 560 ~vvALVGPsGsGKStvaaLL~n~Y~Pt~G~vLlDg~P 596 (770)
T TIGR00958 560 EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 596 (770)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 2599865899839999999985578986568776846
No 394
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.08 E-value=0.13 Score=31.71 Aligned_cols=142 Identities=20% Similarity=0.300 Sum_probs=73.6
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
-..+.+||++||||.||.|-+-.|-.+ +..--+++.. +-.+-.-+.-++-|-.-+-|-|-.+ +.-|++-.-
T Consensus 127 RGLviiVGaTGSGKSTtmAaMi~yRN~-~s~gHIiTIE-------DPIEfih~h~~CIvTQREvGvDTes-w~~AlkNtl 197 (375)
T COG5008 127 RGLVIIVGATGSGKSTTMAAMIGYRNK-NSTGHIITIE-------DPIEFIHKHKRCIVTQREVGVDTES-WEVALKNTL 197 (375)
T ss_pred CCEEEEECCCCCCCHHHHHHHHCCCCC-CCCCCEEEEC-------CHHHHHHCCCCEEEEEEEECCCHHH-HHHHHHHHH
T ss_conf 745999877888840168998601346-8877358823-------8199874156415873341446188-999999877
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----------CCCC
Q ss_conf 51487599865433321157789999899876302223430112310233522577899987643-----------5897
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTT 259 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~-----------~~~~ 259 (321)
.+--|||+|--- | +.+-|+-- +.. ...-|.++.++-|.+-+.|++.+-.|... +++.
T Consensus 198 RQaPDvI~IGEv-R---sretMeyA------i~f--AeTGHLcmaTLHAN~anQaleRIinffP~Err~Qll~DlsLNLk 265 (375)
T COG5008 198 RQAPDVILIGEV-R---SRETMEYA------IQF--AETGHLCMATLHANNANQALERIINFFPEERREQLLIDLSLNLK 265 (375)
T ss_pred HCCCCEEEEEEC-C---CHHHHHHH------HHH--HHCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 518986999730-4---37679999------988--73286589985057715789999863968776436777554578
Q ss_pred EEEEE----CCCCCCCHH
Q ss_conf 69996----545787069
Q gi|254780709|r 260 GLIMT----KMDGTARGG 273 (321)
Q Consensus 260 g~I~T----KlD~ta~~G 273 (321)
|+|-- +-|+..|-+
T Consensus 266 giIaQrL~p~~~gkgR~~ 283 (375)
T COG5008 266 GIIAQRLVPRKDGKGRTA 283 (375)
T ss_pred HHHHHHHCCCCCCCCCEE
T ss_conf 998876133899986415
No 395
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.08 E-value=0.0026 Score=43.54 Aligned_cols=75 Identities=21% Similarity=0.435 Sum_probs=44.9
Q ss_pred CCCC-EEECCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECC---CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 6741-2311354444424789999999852267-42677434---51245688999997530353212235866124542
Q gi|254780709|r 109 HRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGD---TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 (321)
Q Consensus 109 ~~p~-vil~vG~nG~GKTTT~aKLA~~~~~~g~-kV~lva~D---tfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~ 183 (321)
++|+ -||+.||||||||.|+=== |---|+ .|=+-||= =|+-..|.|-+++ .+.|..| |
T Consensus 323 ~kPqGMvLVTGPTGSGKTVSLYTa---LniLN~~~~NISTAEDPVEINLpGINQVnvN-pK~GLTF------------A- 385 (577)
T TIGR02538 323 HKPQGMVLVTGPTGSGKTVSLYTA---LNILNTEEVNISTAEDPVEINLPGINQVNVN-PKIGLTF------------A- 385 (577)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCCCCCCEEEEECCCCEECCC-CCCCCCH------------H-
T ss_conf 079972886266598416878763---1125776745011447724640771512046-6788787------------9-
Q ss_pred HHHHHHHHHCCCEEEEE
Q ss_conf 28999965148759986
Q gi|254780709|r 184 EAFKQAQAKKVDVLIID 200 (321)
Q Consensus 184 ~a~~~a~~~~~DvvliD 200 (321)
.|+..|-.++=|+|.|=
T Consensus 386 aALrSFLRQDPDIIMVG 402 (577)
T TIGR02538 386 AALRSFLRQDPDIIMVG 402 (577)
T ss_pred HHHHHHCCCCCCEEEEE
T ss_conf 99986406899889870
No 396
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.07 E-value=0.0062 Score=40.89 Aligned_cols=42 Identities=24% Similarity=0.553 Sum_probs=34.7
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 66741231135444442478999999985226742677434512456
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA 154 (321)
+..|++|++.||-|+||||-...||..+. .-++-+|.|-+.+
T Consensus 5 ~~~~~iiVVMGVsGsGKSTig~~LA~~l~-----~~fiegDdfHp~~ 46 (177)
T PRK11545 5 NHDHHIYVLMGVSGSGKSAVASAVAHQLH-----AAFLDGDFLHPRC 46 (177)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHC-----CCEECCCCCCCHH
T ss_conf 78875999984798999999999999819-----9855365558999
No 397
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.06 E-value=0.0047 Score=41.73 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=78.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
-.++.++|+|||||||++-=|+..+....-+|.+-.-|.- -..++.+.++++. +|..+...-+...+++-+.+..
T Consensus 33 Ge~~aiiG~sGsGKSTL~~~l~Gl~~~~~G~I~~~G~~i~----~~~~~~~r~~ig~-VfQ~p~~~l~~~tV~e~i~~g~ 107 (277)
T PRK13642 33 GEWVSIIGQNGSGKSTTARLIDGLFEEFEGIVKIDGERLT----AENVWNLRRKIGM-VFQNPDNQFVGATVEDDVAFGM 107 (277)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECC----CCCHHHHHCCCEE-EEECCCCCCCCCCHHHHHHHHH
T ss_conf 9899999999968999999996389988848999999998----5788888517689-9989763257550888898777
Q ss_pred HH-CC--------------CEEEEECCCCCCCHHHH-HHHHHHHHHHHHCCCCCCCCEEEEECCC-CCCHHHHHHHH---
Q ss_conf 51-48--------------75998654333211577-8999989987630222343011231023-35225778999---
Q gi|254780709|r 191 AK-KV--------------DVLIIDTAGRLHNNSIL-MAGIGKMIRVLKRLDPHAPHSVLQVLDA-TTGQNALRQVE--- 250 (321)
Q Consensus 191 ~~-~~--------------DvvliDTAGR~~~~~~l-m~EL~ki~~v~~~~~~~~p~~~~lVlda-~~gq~~~~~a~--- 250 (321)
.+ ++ .+=+.|-+.|.+..-.- +.+...|.+++- ..| + +|++|= |+|.|...+.+
T Consensus 108 ~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~P~~LSGGqrQRvaIA~aLa----~~P-~-ililDEPTs~LD~~~~~~i~~ 181 (277)
T PRK13642 108 ENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA----LRP-E-IIILDESTSMLDPTGRSEIMR 181 (277)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHH----CCC-C-EEEEECCCCCCCHHHHHHHHH
T ss_conf 6669999999999999998779965655791228999999999999996----699-9-999958876589899999999
Q ss_pred ---HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf ---8764358976999654578706999999999769889997589813
Q gi|254780709|r 251 ---MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 (321)
Q Consensus 251 ---~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~ 296 (321)
..++..+++-+++|- | ++.+.. ---|..+-.|+-+.
T Consensus 182 ll~~L~~~~~~Tii~iTH-d--------l~~~~~-aDrv~vm~~G~Iv~ 220 (277)
T PRK13642 182 VIHEIKDKYHLTVLSITH-D--------LDEAAS-SDRILVMRAGEIIK 220 (277)
T ss_pred HHHHHHHHCCCEEEEEEE-C--------HHHHHH-CCEEEEEECCEEEE
T ss_conf 999999816989999945-8--------899971-99899998999999
No 398
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.06 E-value=0.0074 Score=40.37 Aligned_cols=137 Identities=22% Similarity=0.278 Sum_probs=73.0
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHH---HCCCCE------EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 741231135444442478999999985---226742------67743451245688999997530353212235866124
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKV------MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~---~~g~kV------~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 180 (321)
+-+-|.++|-.|+||||.+=+|-++-. +.| +| .-.++|.- ..||= =|+-+. ++
T Consensus 9 ~~RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G-~V~~~~~~~~~~sD~~---~~E~~------RgiSI~--------ss 70 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAG-TVKGRKSGRHATSDWM---EMEKQ------RGISVT--------SS 70 (526)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-EEECCCCCCCCCCCCC---HHHHH------CCCEEE--------CC
T ss_conf 117799993789898999999997467524484-6631467886467885---88997------596486--------15
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-----HHHHHHHHHHH
Q ss_conf 5422899996514875998654333211577899998998763022234301123102335225-----77899987643
Q gi|254780709|r 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN-----ALRQVEMFHAV 255 (321)
Q Consensus 181 v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~-----~~~~a~~F~~~ 255 (321)
++ .+.-+++-+=||||.| |.|- ..|. .+.+.. -+-.++|+||..|=. ..++++.
T Consensus 71 v~-----~~e~~~~~iNliDTPG--h~DF--~~e~---~raL~a-----~D~Av~Vida~~GVe~qTe~~w~~~~~---- 129 (526)
T PRK00741 71 VM-----QFPYRDCLINLLDTPG--HEDF--SEDT---YRTLTA-----VDSALMVIDAAKGVEPQTRKLMEVCRL---- 129 (526)
T ss_pred EE-----EEEECCEEEEEEECCC--CHHH--HHHH---HHHHHH-----HCEEEEEEECCCCCCHHHHHHHHHHHH----
T ss_conf 17-----7867898999990989--4677--8999---999987-----375999997775523336899999886----
Q ss_pred CCCCEE-EEECCCC-CCCHHHHH-HHHHHHCCC
Q ss_conf 589769-9965457-87069999-999997698
Q gi|254780709|r 256 AGTTGL-IMTKMDG-TARGGGLI-PIVVTHKIP 285 (321)
Q Consensus 256 ~~~~g~-I~TKlD~-ta~~G~~l-s~~~~~~~P 285 (321)
-++--+ .+.|||- .+..-.+| ++...+++.
T Consensus 130 ~~iP~i~FINKmDR~~ad~~~~l~ei~~~lg~~ 162 (526)
T PRK00741 130 RDTPIFTFINKLDRDGREPLELLDEIEEVLGIA 162 (526)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 399889999656767898789887788874787
No 399
>KOG1533 consensus
Probab=96.06 E-value=0.0058 Score=41.13 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=59.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH--
Q ss_conf 412311354444424789999999852267426774345124568-89999975303532122358661245422899--
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI-DQLKIWADRTSADFVCSEIGSDAAALAYEAFK-- 187 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~-eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~-- 187 (321)
|+--+++||.||||||-|+-.-.++...|++|.+|..|.---+-- +---.-.+.+.+.-+....+--|---+.-+++
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l 81 (290)
T KOG1533 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYL 81 (290)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 75068876999985311320999999748962799568765678887765199971399999985879961279999999
Q ss_pred -----HH----HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf -----99----65148759986543332115778999989987630
Q gi|254780709|r 188 -----QA----QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 (321)
Q Consensus 188 -----~a----~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~ 224 (321)
.+ +......+|+|-.|..---.+. +.|.+|.+-+.+
T Consensus 82 ~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h-~~l~~I~~~Lek 126 (290)
T KOG1533 82 EANIDWLLEKLKPLTDHYVLFDCPGQVELFTHH-DSLNKIFRKLEK 126 (290)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCEEEEECC-CHHHHHHHHHHH
T ss_conf 854499999745234748999579827987425-609999999997
No 400
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.016 Score=38.10 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=50.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCCCCHHHHHHHH--HHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 311354444424789999999852-----2674267743451245688999--997530353212235866124542289
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSD-----AGLKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~-----~g~kV~lva~DtfR~aA~eQL~--~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
.+++||.|+||||-+--||..+.. .++||.+|-.-.-=+|+.--.- ..|.|++| .||.-=+ +++
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dV--------ld~cpk~-~gm 210 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDV--------LDPCPKA-EGM 210 (308)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHH--------CCCCHHH-HHH
T ss_conf 6996599887077999999986315112677328997150043034358860323221010--------4656178-889
Q ss_pred HHH-HHHCCCEEEEECCCCC
Q ss_conf 999-6514875998654333
Q gi|254780709|r 187 KQA-QAKKVDVLIIDTAGRL 205 (321)
Q Consensus 187 ~~a-~~~~~DvvliDTAGR~ 205 (321)
..| ++.--+|++||--||.
T Consensus 211 mmaIrsm~PEViIvDEIGt~ 230 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGTE 230 (308)
T ss_pred HHHHHHCCCCEEEEECCCCH
T ss_conf 99999549957998343647
No 401
>PRK02496 adk adenylate kinase; Provisional
Probab=96.05 E-value=0.019 Score=37.43 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=52.5
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-
Q ss_conf 3113544444247899999998522674267743451245688999997530353212235866124542289999651-
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK- 192 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~- 192 (321)
|+|+||.||||+|-+.+||..|. =+-+.+.|.+|...-.+= .+|..+.--+-.+. -=|-.++..-+...-.+
T Consensus 4 iillG~PGSGKgTqa~~L~~~~~----~~his~GdllR~~~~~~s-~lg~~i~~~i~~G~--lvpd~iv~~li~~~l~~~ 76 (185)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLQ----IPHISTGDILRQAITEQT-PLGIKAQGYVDSGE--LVPDQLVLGLVQERLQQP 76 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC----CEEECHHHHHHHHHHCCC-HHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHCC
T ss_conf 99979999998999999999969----977888899999987499-88999999998799--677288999999998484
Q ss_pred -CCCEEEEECCCCCCCHHHHHHHH
Q ss_conf -48759986543332115778999
Q gi|254780709|r 193 -KVDVLIIDTAGRLHNNSILMAGI 215 (321)
Q Consensus 193 -~~DvvliDTAGR~~~~~~lm~EL 215 (321)
...-.|+|=--|.......++++
T Consensus 77 ~~~~g~ilDGfPR~~~Qa~~l~~~ 100 (185)
T PRK02496 77 DAANGWILDGFPRNVTQAAFLDEL 100 (185)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 533877886898857889999999
No 402
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.05 E-value=0.0059 Score=41.06 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=56.1
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 74123113544444247899999998522674267743451245688999997530353212235866124542289999
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
.-.|.-+.|+||+||||++-=||-.+.-..-+|.+-.+|+.|-. ..+-+++||-+....--.+ --+.+-+.|+
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-----~~vrr~IGVl~~e~glY~R--lT~rEnl~~F 99 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-----SFVRRKIGVLFGERGLYAR--LTARENLKYF 99 (245)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCH-----HHHHHHCCEECCCCCHHHH--HHHHHHHHHH
T ss_conf 66499987689887123799999832588864998400210171-----8775202131377670355--3089999999
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 65148759986543332115778999
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNNSILMAGI 215 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~~~lm~EL 215 (321)
- +-+|+-=.++.-|. .+||++|
T Consensus 100 a-~L~~l~~~~~kari---~~l~k~l 121 (245)
T COG4555 100 A-RLNGLSRKEIKARI---AELSKRL 121 (245)
T ss_pred H-HHHHHHHHHHHHHH---HHHHHHH
T ss_conf 9-99624026789999---9999886
No 403
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.04 E-value=0.0062 Score=40.89 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=29.2
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 7412311354444424789999999852267426774345
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
+|.+|+++||||||||.-+-.||..+ ..-+|.||.
T Consensus 3 ~~~ii~i~GpTasGKs~la~~la~~~-----~~eIIsaDS 37 (304)
T PRK00091 3 KPKLIVLVGPTASGKTALAIELAKRL-----NGEIISVDS 37 (304)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEEECH
T ss_conf 99779998988658999999999987-----998994126
No 404
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=96.03 E-value=0.017 Score=37.87 Aligned_cols=118 Identities=24% Similarity=0.287 Sum_probs=62.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH--HHHH
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899--9965
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK--QAQA 191 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~--~a~~ 191 (321)
|+++|-+|+||+.|.--+ +|-++|.+.....| |-. ..+ ....
T Consensus 3 ivLlGktG~GKSstgNtI---------------------------------LG~~~F~s~~~~~~--vT~-~c~~~~~~~ 46 (200)
T pfam04548 3 IVLVGKTGNGKSATGNSI---------------------------------LGRKAFESKLRAQG--VTK-TCQLVSRTW 46 (200)
T ss_pred EEEECCCCCCHHHHHHHH---------------------------------CCCCCCCCCCCCCC--CCE-EEEEEEEEE
T ss_conf 999799998436557661---------------------------------79753357898888--741-368999998
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC--CH--HHHH-HHHHHHHHC-CCCEEEEEC
Q ss_conf 14875998654333211577899998998763022234301123102335--22--5778-999876435-897699965
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT--GQ--NALR-QVEMFHAVA-GTTGLIMTK 265 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~--gq--~~~~-~a~~F~~~~-~~~g~I~TK 265 (321)
.+..+.+|||.|-...+...-.-.+.|.+.+....| -||-.+||++... -+ ++++ +-+.|.+.+ .-+=|+||.
T Consensus 47 ~gr~v~ViDTPgl~~~~~~~~~~~~ei~~~~~l~~p-GpHa~LLVi~~~rfT~ee~~~v~~i~~~FGe~~~~~tIVLFT~ 125 (200)
T pfam04548 47 DGRIINVIDTPGLFDLSVSNDFISKEIIRCLLLAEP-GPHAVLLVLSLGRFTEEEEQALRTLQELFGSKILDYMIVVFTR 125 (200)
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEC
T ss_conf 996899997866357677869999999999985589-9857999986688888999999999999757868009999978
Q ss_pred CCC
Q ss_conf 457
Q gi|254780709|r 266 MDG 268 (321)
Q Consensus 266 lD~ 268 (321)
-|.
T Consensus 126 ~D~ 128 (200)
T pfam04548 126 KDD 128 (200)
T ss_pred HHH
T ss_conf 021
No 405
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.03 E-value=0.041 Score=35.13 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.1
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
-.++.++||||+||||++-=||-.+.
T Consensus 29 Ge~~~llGpsG~GKSTllr~i~Gl~~ 54 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999997369999999977999
No 406
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.02 E-value=0.067 Score=33.67 Aligned_cols=136 Identities=21% Similarity=0.342 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 9999999998785201001210001--36674123113544444247899999998522674267743451245688999
Q gi|254780709|r 82 QRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 (321)
Q Consensus 82 ~~i~~~l~~~L~~~L~~~~~~~~~~--~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~ 159 (321)
++....+++.+.- |+..|-.+. .-.+|.=||+.||.|+|||..+--+|+.. |....-+ .+-+=+.
T Consensus 138 ~~~k~el~E~vel---Pl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~---~~~fi~v-------~~s~l~s 204 (390)
T PRK03992 138 DEQIREVREAVEL---PLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRV-------VGSELVQ 204 (390)
T ss_pred HHHHHHHHHHHHH---HHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEE-------EHHHHHH
T ss_conf 9999999999999---8659899997699999727868989997899999999874---8887996-------6799752
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECC---C--CCCC--------HHHHHHHHHHHHHHHHCCC
Q ss_conf 9975303532122358661245422899996514875998654---3--3321--------1577899998998763022
Q gi|254780709|r 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA---G--RLHN--------NSILMAGIGKMIRVLKRLD 226 (321)
Q Consensus 160 ~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTA---G--R~~~--------~~~lm~EL~ki~~v~~~~~ 226 (321)
.| -.+....+++..+.|+.+.--+|+||-. | |... +.-+|+=|..| +
T Consensus 205 k~-------------vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~em-------D 264 (390)
T PRK03992 205 KF-------------IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM-------D 264 (390)
T ss_pred CC-------------CCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC-------C
T ss_conf 45-------------417999999999999970990897143256633567788862088999999999974-------4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 234301123102335225778999
Q gi|254780709|r 227 PHAPHSVLQVLDATTGQNALRQVE 250 (321)
Q Consensus 227 ~~~p~~~~lVlda~~gq~~~~~a~ 250 (321)
...+....+|+=||.--+.++-|-
T Consensus 265 G~~~~~~V~VIaATNrpd~LDpAl 288 (390)
T PRK03992 265 GFDPRGNVKIIAATNRPDILDPAL 288 (390)
T ss_pred CCCCCCCEEEEEECCCCHHCCHHH
T ss_conf 877778827996069810059777
No 407
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.02 E-value=0.013 Score=38.68 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=38.6
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7412311354444424789999999852267426774345124568899999753035
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
+-.++.++||||+||||.+-=|+-+++-..-+|.+-.-|..... -.|++.+.+.++.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~-~~~~~~~~~~ig~ 86 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLS-RRLRKIRRKEIQM 86 (228)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCC-HHHHHHHCCCEEE
T ss_conf 99899999999986999999997289878866998996467799-9999972463799
No 408
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.01 E-value=0.0086 Score=39.92 Aligned_cols=35 Identities=34% Similarity=0.643 Sum_probs=30.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 23113544444247899999998522674267743
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~ 147 (321)
.|.+-|+-||||||.+.+|+.+++.+|.+|.+..-
T Consensus 2 ~IviEG~dGsGKsT~~~~L~~~L~~~g~~v~~~~e 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 89998998999999999999999977993899869
No 409
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.0037 Score=42.45 Aligned_cols=117 Identities=26% Similarity=0.265 Sum_probs=56.3
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHHHHHHHHCCCCCC----CCCCCCCHHHHH
Q ss_conf 67412311354444424789999999852267426774345124-5688999997530353212----235866124542
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS-AAIDQLKIWADRTSADFVC----SEIGSDAAALAY 183 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~-aA~eQL~~~a~~~~v~~~~----~~~~~dp~~v~~ 183 (321)
.-++-+||.||.|+||||+.-=+|.-+--.+. +-.-.|..-+. =+++ .+ .-++++- +..|=|-..=..
T Consensus 36 ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-~~~ePC~~C~~Ck~I~----~g--~~~DviEiDaASn~gVddiR~i~ 108 (515)
T COG2812 36 RIAHAYLFSGPRGVGKTTIARILAKALNCENG-PTAEPCGKCISCKEIN----EG--SLIDVIEIDAASNTGVDDIREII 108 (515)
T ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHH----CC--CCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 42333651377776710499999999568898-7777225316668651----48--86410113644454867999999
Q ss_pred HHHHHHHH-HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 28999965-148759986543332115778999989987630222343011231023352
Q gi|254780709|r 184 EAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 (321)
Q Consensus 184 ~a~~~a~~-~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g 242 (321)
+.+.|+-. .+|-|.|||.+-.+.+ ...+.+=|..+..|..+.+++ |||-
T Consensus 109 e~v~y~P~~~ryKVyiIDEvHMLS~---------~afNALLKTLEEPP~hV~FIl-ATTe 158 (515)
T COG2812 109 EKVNYAPSEGRYKVYIIDEVHMLSK---------QAFNALLKTLEEPPSHVKFIL-ATTE 158 (515)
T ss_pred HHHCCCCCCCCCEEEEEECHHHHHH---------HHHHHHHCCCCCCCCCEEEEE-ECCC
T ss_conf 8724688666641899831876437---------888887511136866748998-5388
No 410
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.0078 Score=40.21 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=34.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 412311354444424789999999852267426774345124568899999753035
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
-.++.++|+||+||||.+-=|+..++-..-+|.+-.-|+-+. -.+.+..++|+
T Consensus 36 Ge~vaivG~nGsGKSTLlk~l~Gll~p~~G~I~v~G~~i~~~----~~~~~~~~ig~ 88 (273)
T PRK13632 36 GEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIFGITISKE----NLKYLRKKIGI 88 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCC----CHHHHHHHEEE
T ss_conf 989999999998699999999738778887599999999968----98998743569
No 411
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=95.98 E-value=0.1 Score=32.38 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=73.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC---------CCCCC-CCCHHHHH
Q ss_conf 311354444424789999999852267426774345124568899999753035321---------22358-66124542
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---------CSEIG-SDAAALAY 183 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~---------~~~~~-~dp~~v~~ 183 (321)
++.+|=--.||||.++.|.+....- .....++++..+...+-+-+ ..+.. .--..+++
T Consensus 2 ~vv~GHVD~GKSTL~g~LL~~~g~i------------~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~ 69 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSI------------FEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAY 69 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCC------------CHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEE
T ss_conf 6999748898889999999982996------------7899999998875416763000343468687882697941058
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH---HHHHHCCCCE
Q ss_conf 2899996514875998654333211577899998998763022234301123102335225778999---8764358976
Q gi|254780709|r 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE---MFHAVAGTTG 260 (321)
Q Consensus 184 ~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~---~F~~~~~~~g 260 (321)
.++..++..+.||||.|. .+.+.++. +-+. ..+-.+||+||.-|.. .|.+ ..-..+++..
T Consensus 70 ---~~f~~~~~~~~iiDtPGH----~dfi~nmi---~gas-----~aD~ailVVda~~G~~--~QT~eh~~~~~~lgi~~ 132 (208)
T cd04166 70 ---RYFSTPKRKFIIADTPGH----EQYTRNMV---TGAS-----TADLAILLVDARKGVL--EQTRRHSYILSLLGIRH 132 (208)
T ss_pred ---EEEEECCCEEEEEECCCC----HHHHHHHH---HHHH-----HCCEEEEEEECCCCCC--HHHHHHHHHHHHCCCCE
T ss_conf ---999819926999878962----88999999---9986-----3774799997588872--78999999999749983
Q ss_pred EE--EECCCCCC----CHHHHH----HHHHHHC-CCEEEEEC----CCCC
Q ss_conf 99--96545787----069999----9999976-98899975----8981
Q gi|254780709|r 261 LI--MTKMDGTA----RGGGLI----PIVVTHK-IPVYFLGV----GEGI 295 (321)
Q Consensus 261 ~I--~TKlD~ta----~~G~~l----s~~~~~~-~Pi~fig~----Ge~i 295 (321)
+| +.|||.-. +.-.+. ......+ .++.||-. |+++
T Consensus 133 iIv~vNKmD~v~~~e~~f~~i~~~~~~~l~~~~~~~~~~IPiSa~~GdNi 182 (208)
T cd04166 133 VVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNV 182 (208)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 99999885768999899999999999999974998871998126778887
No 412
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.97 E-value=0.02 Score=37.40 Aligned_cols=114 Identities=22% Similarity=0.232 Sum_probs=58.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
.-|+++|+-|+||||-+-+|......++..+.++. ++ |.... .. ..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~---------------------~~--------~~~~~-~~----~~ 51 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGN---------------------LD--------PAKTI-EP----YR 51 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEE---------------------CC--------CCCEE-EC----CC
T ss_conf 79999999999889999999647676556761454---------------------04--------32036-22----66
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC----C-CC--EEEEE
Q ss_conf 14875998654333211577899998998763022234301123102335225778999876435----8-97--69996
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA----G-TT--GLIMT 264 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~----~-~~--g~I~T 264 (321)
..+++.++||||.-. +. .+...+ ...++-.++|.|.+......+..+...+.+ + -. =++..
T Consensus 52 ~~~~~~~~Dt~gq~~--------~~---~~~~~y-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~n 119 (219)
T COG1100 52 RNIKLQLWDTAGQEE--------YR---SLRPEY-YRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGN 119 (219)
T ss_pred CCEEEEEEECCCHHH--------HH---HHHHHC-CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 600267676798699--------99---988750-438978999997620565788999999999874668867999697
Q ss_pred CCCCCCC
Q ss_conf 5457870
Q gi|254780709|r 265 KMDGTAR 271 (321)
Q Consensus 265 KlD~ta~ 271 (321)
|.|-...
T Consensus 120 K~Dl~~~ 126 (219)
T COG1100 120 KIDLFDE 126 (219)
T ss_pred CCCCCCC
T ss_conf 6105543
No 413
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.97 E-value=0.038 Score=35.36 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=58.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|+|+|+.|+||||-+.+|. . +...- -+|.++.. ++..+.++
T Consensus 2 ililGLd~aGKTTil~~l~----~-~~~~~----------------------~~PT~G~~------------~~~~~~~~ 42 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ----G-EIPKK----------------------VAPTVGFT------------PTKLRLDK 42 (167)
T ss_pred EEEEEECCCCHHHHHHHHC----C-CCCCC----------------------CCCCCCCC------------EEEEEECC
T ss_conf 8999008998899999982----8-99876----------------------50877731------------79999899
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 87599865433321157789999899876302223430112310233522577899987643589769996545787069
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G 273 (321)
+.+.+.|..|.... +..-+.+.. ..+-+++|+|++--+..-+....|++.+.
T Consensus 43 ~~l~~~DlgG~~~~-----------R~lW~~Y~~-~~~gIIfVVDssD~~rl~eak~~L~~lL~---------------- 94 (167)
T cd04161 43 YEVCIFDLGGGANF-----------RGIWVNYYA-EAHGLVFVVDSSDDDRVQEVKEILRELLQ---------------- 94 (167)
T ss_pred EEEEEEECCCCHHH-----------HHHHHHHCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHC----------------
T ss_conf 99999989987788-----------899998734-77657999855758899999999999965----------------
Q ss_pred HHHHHHHHHCCCEEEEECCCC
Q ss_conf 999999997698899975898
Q gi|254780709|r 274 GLIPIVVTHKIPVYFLGVGEG 294 (321)
Q Consensus 274 ~~ls~~~~~~~Pi~fig~Ge~ 294 (321)
-....++||..++.=|.
T Consensus 95 ----~~~l~~~PiLIlaNKqD 111 (167)
T cd04161 95 ----HPRVSGKPILVLANKQD 111 (167)
T ss_pred ----CHHHCCCEEEEEEECCC
T ss_conf ----88778995999988657
No 414
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=95.96 E-value=0.015 Score=38.29 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999875127899899999-9999878520100121000136674123113544444247899999998
Q gi|254780709|r 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 (321)
Q Consensus 64 ~~Iie~ik~~~~~~~i~~~~i~~-~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~ 135 (321)
++|+++|=+...+++-- ...+. .|+.-++.+.. ...+.. --.|.-|+|+||||||||=-+-.||+..
T Consensus 4 reiV~~LD~yIiGQ~~A-Kk~VAiALrNRyrR~~L--~~~L~~--EV~PKNILMiGpTGVGKTEIARRlAKL~ 71 (463)
T TIGR00390 4 REIVAELDKYIIGQDEA-KKAVAIALRNRYRRSQL--EEELKD--EVTPKNILMIGPTGVGKTEIARRLAKLA 71 (463)
T ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHCC--CCCCCC--CCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 35887514422063667-88999998866776128--711135--6587430432788985447999999984
No 415
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.96 E-value=0.11 Score=32.24 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=28.4
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 123113544444247899999998522674267743451
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dtf 150 (321)
..+.++|+||+||||.+-=|+..+.-..-+|.+-..|..
T Consensus 31 e~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~ 69 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS 69 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC
T ss_conf 899999999998999999996797189848999999966
No 416
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.95 E-value=0.059 Score=34.02 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=24.6
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4123113544444247899999998522674267
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~l 144 (321)
-.++.++||||+||||.+-=||-.++-..-+|.+
T Consensus 28 GE~~~llGpSGsGKSTLlr~iaGL~~p~sG~I~~ 61 (352)
T PRK10851 28 GQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61 (352)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9899999999846999999997699999569999
No 417
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.0085 Score=39.93 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=29.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 412311354444424789999999852267426774345
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
-.++.++||||+||||++-=|+-+++-..-+|.+-..|.
T Consensus 26 Gei~gllGpNGAGKSTll~~i~Gl~~p~~G~i~i~G~~~ 64 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV 64 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEC
T ss_conf 839999999987199999999769788962899999998
No 418
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.93 E-value=0.055 Score=34.25 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=31.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 41231135444442478999999985226742677434512456
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA 154 (321)
+.-|+++||-|+||||-...||.++. .-++-+|.|-+.+
T Consensus 3 ~~a~VVmGVsGsGKSTvg~~LA~~L~-----~~fiegDd~Hp~~ 41 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS-----AKFIDGDDLHPAK 41 (176)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC-----CCEECCCCCCCHH
T ss_conf 85799982898998999999999959-----8776234437898
No 419
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.006 Score=40.98 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=30.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 41231135444442478999999985226742677434512
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
-.++.++||||+||||.+-=++-.++-..-+|.+-.-|..+
T Consensus 30 Ge~~aliG~NGaGKSTLl~~i~Gll~p~~G~I~i~G~~i~~ 70 (277)
T PRK13652 30 KQRIAVIGPNGAGKSTLFKHFNGILKPTSGSVLIRGEPITK 70 (277)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC
T ss_conf 98999999999479999999966999984699999999998
No 420
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.92 E-value=0.03 Score=36.05 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=39.5
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 412311354444424789999999852267426774345124568899999753035
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
-.++.++||+|+||||.+-=++-.++-..-++.+-.-|.......+.-+.+.+.++.
T Consensus 30 Ge~~~iiG~sGsGKTTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig~ 86 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGF 86 (218)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEE
T ss_conf 989999999998699999999669999964999999998879989999986504789
No 421
>PRK13808 adenylate kinase; Provisional
Probab=95.92 E-value=0.13 Score=31.72 Aligned_cols=143 Identities=19% Similarity=0.267 Sum_probs=82.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|+|.||.|+||.|-+..|+..|.- +-|-++|-+|.+--. +-|+ ...+. .+.
T Consensus 3 IIlLGPPGsGKGTQA~~L~~~~gi----~hISTGDmLR~aI~~---------~T~L---------G~kaK---~im---- 53 (297)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGI----VQLSTGDMLRAAVAA---------GTPV---------GLKAK---DIM---- 53 (297)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC----CEECHHHHHHHHHHC---------CCHH---------HHHHH---HHH----
T ss_conf 999789999858999999998698----867586999999975---------9987---------99999---999----
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----CCCCEEEEECCCC
Q ss_conf 87599865433321157789999899876302223430112310233522577899987643-----5897699965457
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----AGTTGLIMTKMDG 268 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~-----~~~~g~I~TKlD~ 268 (321)
-.|.+--|+ ++-+|- ..-+. ..+...=++||+-- .-+.||+.+... +.++.||--+.|+
T Consensus 54 -------~~G~LVPDe-IVi~lI--~erL~----~~d~~~GfILDGFP--RTv~QAEaLD~~L~~~g~~LD~VIel~Vdd 117 (297)
T PRK13808 54 -------ASGGLVPDE-VVVGII--SDRIE----QPDAANGFILDGFP--RTVPQAEALDALLKDKQLKLDAVVELRVNE 117 (297)
T ss_pred -------HCCCCCCHH-HHHHHH--HHHHC----CCCCCCCEEEECCC--CCHHHHHHHHHHHHHCCCCCCEEEEEECCH
T ss_conf -------766988889-999999--99966----85667898722899--998999999999981899978689976788
Q ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCC--CCCCCCCHHHHHHHHC
Q ss_conf 870699999999976988999758981--3255577899999872
Q gi|254780709|r 269 TARGGGLIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFSAVIT 311 (321)
Q Consensus 269 ta~~G~~ls~~~~~~~Pi~fig~Ge~i--~Dl~~f~~~~~~~~ll 311 (321)
.+=..-+..=..++. ..||.+ || ||+.|..||.
T Consensus 118 ~~Lv~RI~~R~~e~~------a~Ge~~R~DD----n~E~~~kRL~ 152 (297)
T PRK13808 118 GALLARVETRVAEMR------ARGEEVRADD----TPEVLAKRLA 152 (297)
T ss_pred HHHHHHHHHHHHHHH------HCCCCCCCCC----CHHHHHHHHH
T ss_conf 999999998888776------1488788899----9999999999
No 422
>PRK01172 ski2-like helicase; Provisional
Probab=95.91 E-value=0.11 Score=32.01 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=72.2
Q ss_pred EECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHH--HHCCCC--CCCCCCCCCH-----HHHH
Q ss_conf 31135444442478999999985-226742677434512456889999975--303532--1223586612-----4542
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSADF--VCSEIGSDAA-----ALAY 183 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~-~~g~kV~lva~DtfR~aA~eQL~~~a~--~~~v~~--~~~~~~~dp~-----~v~~ 183 (321)
++++=|||+||| -+|-+|.+-. .+|+|++.++ .||+=|-|-...|.+ ..|+.+ +.+....+|. .|+-
T Consensus 40 llvsaPTgsGKT-lvAe~ai~~~l~~~~k~iyi~--P~kAL~~EK~~~~~~~~~~g~~v~~~tGd~~~~~~~~~~~~I~V 116 (674)
T PRK01172 40 VIVSVPTAAGKT-LIAYSAIYETFLAGLKSIYIV--PLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVI 116 (674)
T ss_pred EEEECCCCCCHH-HHHHHHHHHHHHHCCCEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEE
T ss_conf 999789998699-999999999998589799987--78999999999999887379827788538889801025589999
Q ss_pred HHHHHHH---------HHCCCEEEEECCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 2899996---------5148759986543------332115778999989987630222343011231023352257789
Q gi|254780709|r 184 EAFKQAQ---------AKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 (321)
Q Consensus 184 ~a~~~a~---------~~~~DvvliDTAG------R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~ 248 (321)
-+.+++. .++..+|+||-.- |-.+=+.++. ++.. + .|+--+.-++||.+ |.-+.
T Consensus 117 ~T~Ek~~sl~~~~~~~l~~v~~vViDEiH~i~d~~RG~~lE~~l~---kl~~-l------~~~~qiIgLSATi~-N~~~l 185 (674)
T PRK01172 117 LTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLS---SARY-V------NPDARILALSATVS-NANEL 185 (674)
T ss_pred ECHHHHHHHHHCCCHHHCCCCEEEEECCEECCCCCCHHHHHHHHH---HHHH-C------CCCEEEEEECCCCC-CHHHH
T ss_conf 878999999864950221369899826525068772499999999---9985-3------86607997157868-99999
Q ss_pred HH
Q ss_conf 99
Q gi|254780709|r 249 VE 250 (321)
Q Consensus 249 a~ 250 (321)
|+
T Consensus 186 a~ 187 (674)
T PRK01172 186 AQ 187 (674)
T ss_pred HH
T ss_conf 98
No 423
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.91 E-value=0.056 Score=34.20 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=25.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4123113544444247899999998522674267
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~l 144 (321)
-.++.++|+||+||||.+-=|+-.++-..-++.+
T Consensus 38 GEiv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~~ 71 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPTAGDLLA 71 (257)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9899999899888999999996589888870898
No 424
>pfam00406 ADK Adenylate kinase.
Probab=95.90 E-value=0.018 Score=37.65 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=50.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH--HC
Q ss_conf 1354444424789999999852267426774345124568899999753035321223586612454228999965--14
Q gi|254780709|r 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA--KK 193 (321)
Q Consensus 116 ~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~--~~ 193 (321)
|+|+.||||+|-+.+||..|. -+-+-+.|.+|..+-.+- .+++++.--+-.+ .--|..++.+-+..+-. ..
T Consensus 1 i~G~PGsGKgTqa~~La~~~~----~~~is~GdllR~~~~~~s-~~g~~i~~~i~~G--~lvpd~i~~~l~~~~l~~~~~ 73 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYG----IVHLSTGDLLRAEVKSGT-ELGKEAKEYMDKG--ELVPDEVVVGLVKERLEQNDC 73 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHC----CEEECHHHHHHHHHHCCC-HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCCCCC
T ss_conf 918898985999999999859----906769999999986288-7999999999869--954309999999999707455
Q ss_pred CCEEEEECCCCCCCHHHHHHHH
Q ss_conf 8759986543332115778999
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGI 215 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL 215 (321)
..-+++|=--|.......++++
T Consensus 74 ~~g~iLDGfPRt~~Qa~~l~~~ 95 (186)
T pfam00406 74 KNGFLLDGFPRTVPQAEALEEM 95 (186)
T ss_pred CCCEEEECCCCCHHHHHHHHHH
T ss_conf 4866873798989999999999
No 425
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.89 E-value=0.04 Score=35.25 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=54.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHHCCC---------CCCCCCCCCCHHHH
Q ss_conf 2311354444424789999999852267426774345-1245688999997530353---------21223586612454
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKIWADRTSAD---------FVCSEIGSDAAALA 182 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt-fR~aA~eQL~~~a~~~~v~---------~~~~~~~~dp~~v~ 182 (321)
|-=+=||.|+||||-|=++|-.-..+|++|+.|-+-= |=+ |-+++.++-.+.+ +|....=.+=..+.
T Consensus 14 iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~---ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~ai 90 (223)
T TIGR02237 14 ITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSP---ERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEVAI 90 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHHHH
T ss_conf 88987589986789999999999861895899962898328---999998630588988884153552353567899999
Q ss_pred HHHHHHHHHH--CCCEEEEECCC
Q ss_conf 2289999651--48759986543
Q gi|254780709|r 183 YEAFKQAQAK--KVDVLIIDTAG 203 (321)
Q Consensus 183 ~~a~~~a~~~--~~DvvliDTAG 203 (321)
.++..-+..+ .+++|++|..-
T Consensus 91 ~~~~~~~~~~G~~~~LvVvDs~t 113 (223)
T TIGR02237 91 QKTSKLIDRDGDKADLVVVDSFT 113 (223)
T ss_pred HHHHHHHHCCCCEEEEEEEECCH
T ss_conf 99999986068833148881533
No 426
>pfam00931 NB-ARC NB-ARC domain.
Probab=95.87 E-value=0.1 Score=32.37 Aligned_cols=89 Identities=24% Similarity=0.243 Sum_probs=44.1
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHH-HHH-HCCCC-EEEE-ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 6741231135444442478999999-985-22674-2677-434512456889999975303532122358661245422
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSK-KMS-DAGLK-VMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~-~~~-~~g~k-V~lv-a~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~ 184 (321)
+...||.++|.-|+|||| +||..+ ... +.... ++.+ ....|- -.+-++...++++.+..... ..+....+.
T Consensus 17 ~~~~vI~I~G~gGiGKTt-LA~~v~~~~~i~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~-~~~~~~l~~- 91 (285)
T pfam00931 17 ENLGVVGIVGMGGVGKTT-LAKQIYNDDSVGGHFDSVAWVVVSKTYT--EFRLQKDILQELGLDDSDWV-EKNESELAV- 91 (285)
T ss_pred CCCEEEEEECCCCCCHHH-HHHHHHCCHHHHHCCCEEEEEEECCCCC--HHHHHHHHHHHHCCCCCCCC-CCCHHHHHH-
T ss_conf 895399988999563999-9999971655650598389999797666--89999999998566654555-578999999-
Q ss_pred HHHH-HHHHCCCEEEEECCC
Q ss_conf 8999-965148759986543
Q gi|254780709|r 185 AFKQ-AQAKKVDVLIIDTAG 203 (321)
Q Consensus 185 a~~~-a~~~~~DvvliDTAG 203 (321)
-+.. .+.+.| +|++|=.-
T Consensus 92 ~l~~~L~~kr~-LiVLDDVw 110 (285)
T pfam00931 92 KIKEALLRKRF-LLVLDDVW 110 (285)
T ss_pred HHHHHHCCCCE-EEEECCCC
T ss_conf 99999727966-99963888
No 427
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.87 E-value=0.0051 Score=41.47 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=36.2
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
Q ss_conf 412311354444424789999999852267426774345124568899
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL 158 (321)
-.++.++||||+||||++-=++-.++-..-+|.+-..|.-+....+..
T Consensus 26 Gei~~llGpNGAGKSTll~~i~Gl~~p~~G~I~~~g~di~~~~~~~r~ 73 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHH
T ss_conf 959999999996199999999779999862999999999999999999
No 428
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=95.87 E-value=0.041 Score=35.11 Aligned_cols=139 Identities=22% Similarity=0.330 Sum_probs=73.9
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
-|+++|..|||||+-+-++.+---.....+ .++++++... +-. ..+
T Consensus 2 KivvvG~~~vGKTsli~r~~~~~f~~~~~~---------------------ti~~~~~~~~-------~~~------~~~ 47 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAA---------------------TIGVDFKVKT-------LTV------DGK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCC---------------------CCCCCCEEEE-------EEE------CCE
T ss_conf 899999799579999999963999998487---------------------3133423899-------999------999
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-------CCC-EEEEE
Q ss_conf 4875998654333211577899998998763022234301123102335225778999876435-------897-69996
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-------GTT-GLIMT 264 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~-------~~~-g~I~T 264 (321)
.+.+-|.||+|.-......-..+ ...+-.++|.|.+.. ++++.++.+.+.+ ++- -+|-+
T Consensus 48 ~~~l~iwDt~g~~~~~~~~~~~~------------~~a~~~ilvfd~~~~-~Sf~~i~~~~~~i~~~~~~~~~~~ilVgn 114 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYY------------RGAQGVILVYDVTRR-DTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred EEEEEEEECCCCCCCCCCHHHHH------------HHCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 99999999999842353422441------------321534899767826-56999999999999856888873788731
Q ss_pred CCCCCCC---HHHHHHHHHHHCCCEEEEEC--CCCCCCC
Q ss_conf 5457870---69999999997698899975--8981325
Q gi|254780709|r 265 KMDGTAR---GGGLIPIVVTHKIPVYFLGV--GEGINDL 298 (321)
Q Consensus 265 KlD~ta~---~G~~ls~~~~~~~Pi~fig~--Ge~i~Dl 298 (321)
|.|-..+ .=.+...+...+.|...++. |++|+++
T Consensus 115 K~D~~~~~v~~~~~~~~a~~~~~~y~e~Sak~g~nV~~~ 153 (161)
T cd01863 115 KIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQA 153 (161)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 044000689999999999986999999715868159999
No 429
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.86 E-value=0.083 Score=33.00 Aligned_cols=124 Identities=22% Similarity=0.267 Sum_probs=69.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHH---HCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 231135444442478999999985---22674--2677434512456889999975303532122358661245422899
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMS---DAGLK--VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~---~~g~k--V~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
-|.++|--+.||||-+-.|..+-. ..+.. ...-..|+. ..||-|...-... |.++.+..
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~---~~E~eRgiTI~s~-----------~~sl~~~~-- 65 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIR---KDEQERGISIKSS-----------PISLVLPD-- 65 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC---HHHHHHCCCEECC-----------EEEEEEEC--
T ss_conf 5999827898989999999997344555404442113575164---6654203558614-----------59999825--
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHHHCCCCEEE
Q ss_conf 99651487599865433321157789999899876302223430112310233522-----5778999876435897699
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEMFHAVAGTTGLI 262 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~F~~~~~~~g~I 262 (321)
.+.+.|-+-||||.|. .+-+.|...-.++ -+-.+||+||.-|- ..+.+|.. ..++ -=++
T Consensus 66 -~~~k~~~inlIDTPGH----~dF~~ev~~al~~--------~DgailVVDa~eGv~~qT~~~l~~a~~--~~l~-~ilv 129 (213)
T cd04167 66 -SKGKSYLFNIIDTPGH----VNFMDEVAAALRL--------SDGVVLVVDVVEGVTSNTERLIRHAIL--EGLP-IVLV 129 (213)
T ss_pred -CCCCEEEEEEEECCCC----HHHHHHHHHHHHH--------CCEEEEEEECCCCCCHHHHHHHHHHHH--CCCC-EEEE
T ss_conf -6675057877889872----4179999988863--------776799998788875779999999998--6999-8999
Q ss_pred EECCCC
Q ss_conf 965457
Q gi|254780709|r 263 MTKMDG 268 (321)
Q Consensus 263 ~TKlD~ 268 (321)
+.|+|-
T Consensus 130 iNKiDR 135 (213)
T cd04167 130 INKIDR 135 (213)
T ss_pred EECCCC
T ss_conf 988234
No 430
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.84 E-value=0.012 Score=38.93 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=65.4
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
|+++|..||||||-+-++.. ..... + +---+|..+.. + ...+
T Consensus 2 I~llG~~~~GKTsll~~~~~----~~f~~-----~------------~~pTig~~~~~---------i--------~~~~ 43 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG----GQFSE-----D------------TIPTVGFNMRK---------V--------TKGN 43 (159)
T ss_pred EEEECCCCCCHHHHHHHHHC----CCCCC-----C------------CCCCCCEEEEE---------E--------EECC
T ss_conf 89999999869999999975----99988-----6------------16732505899---------9--------9899
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH-HHHHHC---CCC----EEEEEC
Q ss_conf 875998654333211577899998998763022234301123102335225778999-876435---897----699965
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE-MFHAVA---GTT----GLIMTK 265 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~-~F~~~~---~~~----g~I~TK 265 (321)
+.+-+-||||.- .++.|. ..+.. .-+-.++|.|++-- +.++.++ .+++.+ ... =++.+|
T Consensus 44 ~~l~iwDt~G~e-----~~~~l~------~~y~~-~~~~ii~V~D~sd~-~s~~~~~~~l~~~~~~~~~~~~piliv~NK 110 (159)
T cd04159 44 VTLKVWDLGGQP-----RFRSMW------ERYCR-GVNAIVYVVDAADR-TALEAAKNELHDLLEKPSLEGIPLLVLGNK 110 (159)
T ss_pred EEEEEEECCCHH-----HHHHHH------HHHHC-CCCEEEECCCCCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 999999798358-----779999------98746-86368751577878-899999999999985443489828988835
Q ss_pred CCCCCCH-----HHHHHHHHHHCCCEEEE--E--CCCCCCCC
Q ss_conf 4578706-----99999999976988999--7--58981325
Q gi|254780709|r 266 MDGTARG-----GGLIPIVVTHKIPVYFL--G--VGEGINDL 298 (321)
Q Consensus 266 lD~ta~~-----G~~ls~~~~~~~Pi~fi--g--~Ge~i~Dl 298 (321)
.|-..+. =..+......+.++.|+ + +|++|++.
T Consensus 111 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gI~e~ 152 (159)
T cd04159 111 NDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIV 152 (159)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 676434789999999999987349987999979689698999
No 431
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.84 E-value=0.015 Score=38.31 Aligned_cols=33 Identities=42% Similarity=0.552 Sum_probs=29.0
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 366741231135444442478999999985226
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g 139 (321)
...+|.++.++||.|+||||-+--|..+|.++.
T Consensus 35 ~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~ 67 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN 67 (225)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899996999989899778899999999985443
No 432
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=95.83 E-value=0.0049 Score=41.60 Aligned_cols=66 Identities=26% Similarity=0.427 Sum_probs=42.2
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC---------CCCCCCCCHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321---------223586612454
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---------CSEIGSDAAALA 182 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~---------~~~~~~dp~~v~ 182 (321)
+-|++|||||||||=-+ +|+|++++|||- +++-|.|.--|.
T Consensus 153 SNILLiGPTGSGKTLLA------------------------------qTLA~~L~VPfAiADATtLTEAGYVGEDVENIL 202 (452)
T TIGR00382 153 SNILLIGPTGSGKTLLA------------------------------QTLARILNVPFAIADATTLTEAGYVGEDVENIL 202 (452)
T ss_pred CCEEEECCCCCCHHHHH------------------------------HHHHHHCCCCEEECCHHHHHCCCCCCCCHHHHH
T ss_conf 66245468885268999------------------------------999987388742111110200664242288999
Q ss_pred HHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 228999965----14875998654333211577899998998
Q gi|254780709|r 183 YEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 (321)
Q Consensus 183 ~~a~~~a~~----~~~DvvliDTAGR~~~~~~lm~EL~ki~~ 220 (321)
.+=++.|-- -+.-+|.|| |+.||.|
T Consensus 203 ~~Llq~ad~DV~kA~kGIiYID-------------EIDKIaR 231 (452)
T TIGR00382 203 LKLLQAADYDVEKAQKGIIYID-------------EIDKIAR 231 (452)
T ss_pred HHHHHHCCCCHHHHCCCEEEEE-------------CCCCHHH
T ss_conf 9998741455245278508984-------------2231012
No 433
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.82 E-value=0.2 Score=30.38 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=38.2
Q ss_pred EECCCCCCCCHHHHHHH-HHHHHHHC--CCC-EEEEECCCCCHHHH---HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 31135444442478999-99998522--674-26774345124568---8999997530353212235866124542289
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGK-LSKKMSDA--GLK-VMLAAGDTFRSAAI---DQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 114 il~vG~nG~GKTTT~aK-LA~~~~~~--g~k-V~lva~DtfR~aA~---eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
++...++|+|||.+-.= +..++... ... -++|-+-| |.-|. ++.+.++...++.+.....|.+... + .
T Consensus 39 vi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PT-rELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~---~-~ 113 (203)
T cd00268 39 VIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT-RELALQIAEVARKLGKHTNLKVVVIYGGTSIDK---Q-I 113 (203)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHH---H-H
T ss_conf 8997579972228888699999861667689669999687-999999999999850579838999838988799---9-9
Q ss_pred HHHHHHCCCEEEEECCCCCC
Q ss_conf 99965148759986543332
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLH 206 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~ 206 (321)
.. ..++.| |+|=|.||+.
T Consensus 114 ~~-l~~~~~-IlI~TPgrl~ 131 (203)
T cd00268 114 RK-LKRGPH-IVVATPGRLL 131 (203)
T ss_pred HH-HHCCCE-EEEECCHHHH
T ss_conf 99-853875-9996818999
No 434
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=95.78 E-value=0.019 Score=37.52 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=43.5
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH----------HHHHHHHH---HHHHCCC-CCCCCCCCC
Q ss_conf 123113544444247899999998522674267743451245----------68899999---7530353-212235866
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA----------AIDQLKIW---ADRTSAD-FVCSEIGSD 177 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~a----------A~eQL~~~---a~~~~v~-~~~~~~~~d 177 (321)
.+|.++||.||||||-+.+|...+...=..+.-.++=.=|++ .-++.+.+ ++=+.-. +....+|..
T Consensus 2 klivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 81 (182)
T pfam00625 2 RPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEHAEFNGNYYGTS 81 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 86999898999999999999984866734457655479998787896579965899999875437776264079725640
Q ss_pred CHHHHHHHHHHHHHHCCCEEE-EECCC
Q ss_conf 124542289999651487599-86543
Q gi|254780709|r 178 AAALAYEAFKQAQAKKVDVLI-IDTAG 203 (321)
Q Consensus 178 p~~v~~~a~~~a~~~~~Dvvl-iDTAG 203 (321)
.++++.+..++.++|+ +|+.|
T Consensus 82 -----~~~I~~~~~~g~~vvl~id~~g 103 (182)
T pfam00625 82 -----KEAIEQIAESGKICILDVDIQG 103 (182)
T ss_pred -----HHHHHHHHHCCCEEEEEECHHH
T ss_conf -----2777999867996999972899
No 435
>KOG0734 consensus
Probab=95.78 E-value=0.13 Score=31.54 Aligned_cols=161 Identities=22% Similarity=0.282 Sum_probs=88.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCC--CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 999998785201001210001--366741231135444442478999999985226742677434512456889999975
Q gi|254780709|r 86 YDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 (321)
Q Consensus 86 ~~l~~~L~~~L~~~~~~~~~~--~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~ 163 (321)
...+++|.++..=+..|..+. .-+=|.=|+++||.|.|||--+ . ..|.
T Consensus 310 DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLA----R--------------------------AvAG 359 (752)
T KOG0734 310 DEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLA----R--------------------------AVAG 359 (752)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHH----H--------------------------HHHC
T ss_conf 789999999999860908764314758885387689997556999----9--------------------------8605
Q ss_pred HHCCCCCCC-CCCCC------CHHHHHHHHHHHHHHCCCEEEEECC---C--CCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 303532122-35866------1245422899996514875998654---3--3321157789999899876302223430
Q gi|254780709|r 164 RTSADFVCS-EIGSD------AAALAYEAFKQAQAKKVDVLIIDTA---G--RLHNNSILMAGIGKMIRVLKRLDPHAPH 231 (321)
Q Consensus 164 ~~~v~~~~~-~~~~d------p~~v~~~a~~~a~~~~~DvvliDTA---G--R~~~~~~lm~EL~ki~~v~~~~~~~~p~ 231 (321)
..+||||.. ..+=| -|.=+++-...||++---+|+||-- | |.+.+...|+ +.|.+.+-..+...++
T Consensus 360 EA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~k--qTlNQLLvEmDGF~qN 437 (752)
T KOG0734 360 EAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAK--QTLNQLLVEMDGFKQN 437 (752)
T ss_pred CCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHH--HHHHHHHHHHCCCCCC
T ss_conf 56897474166204454220148999999999873498599972002205667862778999--8999999984286768
Q ss_pred EEEEECCCCCCHHHHHHHHH----HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 11231023352257789998----7643589769996545787069999999997698
Q gi|254780709|r 232 SVLQVLDATTGQNALRQVEM----FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 (321)
Q Consensus 232 ~~~lVlda~~gq~~~~~a~~----F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~P 285 (321)
|-+.|+-||.--++++.|-. |... |.+..=|= +|-..+=-.|..++|
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD~~-----v~Vp~PDv--~GR~eIL~~yl~ki~ 488 (752)
T KOG0734 438 EGIIVIGATNFPEALDKALTRPGRFDRH-----VTVPLPDV--RGRTEILKLYLSKIP 488 (752)
T ss_pred CCEEEEECCCCHHHHHHHHCCCCCCCEE-----EECCCCCC--CCHHHHHHHHHHCCC
T ss_conf 8669995168745556873488755336-----74689773--328999999983487
No 436
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.78 E-value=0.14 Score=31.34 Aligned_cols=107 Identities=23% Similarity=0.225 Sum_probs=68.3
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 67412311354444424789999999852267426774345124568899999753035321223586612454228999
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~ 188 (321)
....+-++||.-|+||||.++-.--.+...|++|.=+|.- --|.+.|+. ..||+.-+ -+ ++.+
T Consensus 360 ~~~~iavVvG~AGtGKStmL~aAReawEa~GyrV~GaALs---GkAAegLe~---~sGI~SrT------lA-----s~e~ 422 (992)
T PRK13889 360 DGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALS---GIAAENLEG---GSGIASRT------IA-----SLEH 422 (992)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC---HHHHHHHHH---CCCCCCHH------HH-----HHHH
T ss_conf 7897589983388878899999999999779889811500---689997653---47943167------99-----9999
Q ss_pred HH------HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 96------514875998654333211577899998998763022234301123102335
Q gi|254780709|r 189 AQ------AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 (321)
Q Consensus 189 a~------~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~ 241 (321)
+. ...-||++||-||. .....|..|-++.+.. --.++||-|...
T Consensus 423 ~w~~g~~~L~~~dVlVVDEAGM--VgSRqMarll~~Ae~A-------GAKVVLVGD~~Q 472 (992)
T PRK13889 423 GWGQGRDLLTARDVLVIDEAGM--VGTRQLERVLSHAADA-------GAKVVLVGDPQQ 472 (992)
T ss_pred HHHCCCCCCCCCCEEEEECCCC--CCHHHHHHHHHHHHHC-------CCEEEEECCHHH
T ss_conf 8746733478985899967655--7749999999999984-------998999488777
No 437
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=95.77 E-value=0.13 Score=31.56 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=80.0
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
.|+++|-.|||||+-+..+..---.....+ -+|++++..... + ..+
T Consensus 2 KivlvGd~~VGKTsLi~rf~~~~F~~~y~~---------------------Tig~d~~~k~i~-----v--------~~~ 47 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQ---------------------TLGVNFMEKTIS-----I--------RGT 47 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCC---------------------CCEEEEEEEEEE-----E--------CCE
T ss_conf 899999999898999999953999999888---------------------733898999999-----9--------999
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCEEEEECC
Q ss_conf 4875998654333211577899998998763022234301123102335225778999876435------8976999654
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA------GTTGLIMTKM 266 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~------~~~g~I~TKl 266 (321)
.+.+-|.||||.- +...+... +.. ..+-.+||-|.+. .++++.++.+.+.+ .+-=+|-+|.
T Consensus 48 ~v~l~iwDtaGqe--------~f~~~~~~---y~~-~a~~~ilvfDit~-~~Sf~~~~~w~~~i~~~~~~~~~ilVGnK~ 114 (182)
T cd04128 48 EITFSIWDLGGQR--------EFINMLPL---VCN-DAVAILFMFDLTR-KSTLNSIKEWYRQARGFNKTAIPILVGTKY 114 (182)
T ss_pred EEEEEEEECCCCH--------HHHHHHHH---HHC-CCCEEEEEEECCC-HHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 9999998677648--------78999999---864-7878999997899-899998999999999768999889999866
Q ss_pred CC------CCCH---HHHHHHHHHHCCCEEEEEC--CCCCCCCCCCCHHHHHHHHCC
Q ss_conf 57------8706---9999999997698899975--898132555778999998728
Q gi|254780709|r 267 DG------TARG---GGLIPIVVTHKIPVYFLGV--GEGINDLEPFVAKDFSAVITG 312 (321)
Q Consensus 267 D~------ta~~---G~~ls~~~~~~~Pi~fig~--Ge~i~Dl~~f~~~~~~~~llG 312 (321)
|= ..+- --+...+...+.|..+++. |++|+++ -+.++++++.
T Consensus 115 DL~~~~~~~~~~~~~~~~~~~a~~~~~~f~etSAk~~~nV~e~----F~~i~~~i~~ 167 (182)
T cd04128 115 DLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI----FKIVLAKAFD 167 (182)
T ss_pred CCCCCCCCHHEEHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH----HHHHHHHHHC
T ss_conf 3556556223102489999999984998999947999798999----9999999966
No 438
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.77 E-value=0.062 Score=33.91 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=65.4
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHH
Q ss_conf 6674123113544444247899999998522674267743451245688999997530353212235866--12454228
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEA 185 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d--p~~v~~~a 185 (321)
..-|+.++|.|+.|+||++.+-.+|+++.-++... -+|..-+.- +|-.-+..-++-++..+.++. .+.-+++-
T Consensus 22 ~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~--~~Cg~C~sC---~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l 96 (319)
T PRK06090 22 ERIPGALLLQSDEGLGVESLVELFSHALLCQNYQS--EACGFCHSC---ELMKSGNHPDLHVIKPEKEGKSITVEQIRQC 96 (319)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCHHH---HHHHCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 99630676679998579999999999980899999--988778779---9987589998236612335676879999999
Q ss_pred HHHH----HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 9999----65148759986543332115778999989987630222343011231023352
Q gi|254780709|r 186 FKQA----QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 (321)
Q Consensus 186 ~~~a----~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g 242 (321)
.+.+ ...++-|++||-|-||..... +-|-| ..++.|..+++.+-+..-
T Consensus 97 ~~~~~~~~~~g~~KV~iI~~ae~m~~~Aa--NALLK-------tLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 97 NRLAQESSQLGGYRLFVIEPADAMNESAS--NALLK-------TLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred HHHHHHCCCCCCCEEEEECCHHHCCHHHH--HHHHH-------HHCCCCCCEEEEEEECCH
T ss_conf 99975452106936999814443499999--99999-------842899883899876851
No 439
>PRK08694 consensus
Probab=95.72 E-value=0.13 Score=31.70 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=60.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEC--------------------CCCCHHHH-----HHHHHHHH-H
Q ss_conf 12311354444424789999999852267-4267743--------------------45124568-----89999975-3
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAG--------------------DTFRSAAI-----DQLKIWAD-R 164 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~-kV~lva~--------------------DtfR~aA~-----eQL~~~a~-~ 164 (321)
..|.+.|-+|+|||+.+--+|.....+|+ +|++.+. ...|.|-. +++...+. .
T Consensus 219 ~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~fSLEMs~~~l~~Rlla~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l 298 (468)
T PRK08694 219 DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSVGRLDQSVLKTGRLEDEHWGRLNEAVVKL 298 (468)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 47999617865378999999999998479847997788999999999999725986321104899999999999999998
Q ss_pred HCCCCCCCC-CCCCCHHHHHHHHHHHHHHC--CCEEEEECCCCCCCH---HHHHHHHHHHHHHHHCCC
Q ss_conf 035321223-58661245422899996514--875998654333211---577899998998763022
Q gi|254780709|r 165 TSADFVCSE-IGSDAAALAYEAFKQAQAKK--VDVLIIDTAGRLHNN---SILMAGIGKMIRVLKRLD 226 (321)
Q Consensus 165 ~~v~~~~~~-~~~dp~~v~~~a~~~a~~~~--~DvvliDTAGR~~~~---~~lm~EL~ki~~v~~~~~ 226 (321)
.+.|+|-.. .+-.+..+.-.+-...+..+ .|+|+||--+.+... .+.-.|+..|.+-+|...
T Consensus 299 ~~~pl~idd~~~~t~~~i~a~~r~~~~~~~~kl~~vvIDYLqLi~~~~~~~~r~~~i~~isr~LK~lA 366 (468)
T PRK08694 299 SDAPVYIDETPGLTALELRARARRLARQFNNKLGLIVIDYLQLMAGSGRSDNRASELGEISRSLKALA 366 (468)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 62996897699998879999999999983898738997367541688876559999999999999999
No 440
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.72 E-value=0.013 Score=38.66 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 41231135444442478999999985226742677434512
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
-.++.++||||+||||++-=|+-.++-..-+|.+-..|..+
T Consensus 31 Gei~gllG~NGaGKSTllk~i~Gl~~p~~G~i~i~G~d~~~ 71 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK 71 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf 82999999999849999999977977897489999999886
No 441
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.71 E-value=0.0074 Score=40.36 Aligned_cols=33 Identities=36% Similarity=0.554 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 21000136674123113544444247899999998
Q gi|254780709|r 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 (321)
Q Consensus 101 ~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~ 135 (321)
....+++... +.+++|+||+||||.+.-|...+
T Consensus 14 ~~~~i~f~~~--itaivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 14 ERSEIEFFSP--LTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CCCEEEEECC--EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 7735885088--89999899999999999986304
No 442
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.71 E-value=0.0086 Score=39.92 Aligned_cols=26 Identities=31% Similarity=0.518 Sum_probs=22.6
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSD 137 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~ 137 (321)
..|++.|..|+||||.+.|+|.-+..
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~~wa~ 26 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQ 26 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 98999827989899999999999986
No 443
>PRK05858 hypothetical protein; Provisional
Probab=95.68 E-value=0.22 Score=30.01 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCC---------C--CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 98999999999878520100121000136---------6--741231135444442478999999985226742677434
Q gi|254780709|r 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFS---------H--RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 (321)
Q Consensus 80 ~~~~i~~~l~~~L~~~L~~~~~~~~~~~~---------~--~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D 148 (321)
+.+++...+.+.+...+.+...|..+... . .|....-.-.........+.+++..+.+..+-|+++-..
T Consensus 136 ~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvii~G~g 215 (543)
T PRK05858 136 SAENAGRLVDQALQAAVSAHSGVVFVDFPMDHAFSMASDNGRPGALTELPAGPEPDGDALDRAAGLLSTAQRPVIMAGTN 215 (543)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999999999986289973999936666523044456776556678889999999999999998279978996864
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCC------CCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 512456889999975303532122358------661245422899996514875998
Q gi|254780709|r 149 TFRSAAIDQLKIWADRTSADFVCSEIG------SDAAALAYEAFKQAQAKKVDVLII 199 (321)
Q Consensus 149 tfR~aA~eQL~~~a~~~~v~~~~~~~~------~dp~~v~~~a~~~a~~~~~Dvvli 199 (321)
..|.+|.++|+.+++++|+|++....+ .+|..+- .+... ..++.|+||+
T Consensus 216 v~~~~a~~~l~~lae~lg~Pv~tt~~gkg~~p~~hpl~~~-~~~~~-~l~~aDlil~ 270 (543)
T PRK05858 216 VWWGHAEAALLRLAEELHIPVLMNGMARGVVPADHPLAFS-RARSK-ALGEADVALV 270 (543)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHH-HHHHH-HHCCCCEEEE
T ss_conf 2233339999999998699778755557768887704565-78998-8556998999
No 444
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=95.67 E-value=0.034 Score=35.70 Aligned_cols=97 Identities=25% Similarity=0.277 Sum_probs=55.7
Q ss_pred EECCCCCCC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCHH------------HHHHHHHHHH--HHCCCCCCCCCCCCC
Q ss_conf 311354444-4247899999998522674267743451245------------6889999975--303532122358661
Q gi|254780709|r 114 ILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA------------AIDQLKIWAD--RTSADFVCSEIGSDA 178 (321)
Q Consensus 114 il~vG~nG~-GKTTT~aKLA~~~~~~g~kV~lva~DtfR~a------------A~eQL~~~a~--~~~v~~~~~~~~~dp 178 (321)
+-++|+||+ |||||.-=+++.|...|++++++.+--++.+ +.+=.+.+++ ..|+..+.-+-.+
T Consensus 100 l~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~igT~g~~~~~~~~~~~lTTP~~l~L~~~l~~~~e~g~~~~vmEvSS-- 177 (481)
T PRK00139 100 LKLIGVTGTNGKTTTAYLIAQILRLLGKKAALIGTLGNGLGGTLIPSGLTTPEALDLQRLLAEAVDAGATHVAMEVSS-- 177 (481)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCEECCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECH--
T ss_conf 808999589984349999999998749863143022114187303667898876889999999998799779998430--
Q ss_pred HHHHHHHHHHHHHH--CCCEEEEECCCCCCCHHH-HHHHHHH
Q ss_conf 24542289999651--487599865433321157-7899998
Q gi|254780709|r 179 AALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSI-LMAGIGK 217 (321)
Q Consensus 179 ~~v~~~a~~~a~~~--~~DvvliDTAGR~~~~~~-lm~EL~k 217 (321)
.|+...+.. .+|+-++=--|+-|.|.. -|++..+
T Consensus 178 -----hgl~q~Rv~gi~fdiav~TNIs~DHLD~Hgs~e~Y~~ 214 (481)
T PRK00139 178 -----HALDQGRVDGLTFDVAVFTNLTRDHLDYHGTMEDYFA 214 (481)
T ss_pred -----HHHHHCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHH
T ss_conf -----3555221348875689996576778534378999999
No 445
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.074 Score=33.37 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=80.1
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
-.++.++||+|+||||.+-=++-.++-..-+|.+---|.-.....+ + ++-++.-.+.--|.--+++-+.+.-
T Consensus 28 Ge~~~iiGpSGsGKSTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~------r--~ig~vfQ~~~Lfp~ltV~eNi~~~l 99 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE------R--NVGFVFQHYALFRHMTVFDNVAFGL 99 (239)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHH------C--CEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 9899999999977999999997699998639999999999999656------7--7679817821067996999998799
Q ss_pred H------------------HCCCEEEEECCCCCCCHHHH----HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH----
Q ss_conf 5------------------14875998654333211577----899998998763022234301123102335225----
Q gi|254780709|r 191 A------------------KKVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN---- 244 (321)
Q Consensus 191 ~------------------~~~DvvliDTAGR~~~~~~l----m~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~---- 244 (321)
. +-.+.+ .-+++.+....- |++...|.|++- ..| +++|.-..+++-|
T Consensus 100 ~~~~~~~~~~~~e~~~rv~~~l~~v--~l~~~~~~~p~eLSGGq~QRVaiARAl~----~~P-~vlllDEP~s~LD~~~~ 172 (239)
T cd03296 100 RVKPRSERPPEAEIRAKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARALA----VEP-KVLLLDEPFGALDAKVR 172 (239)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHH----CCC-CEEEECCCCCCCCHHHH
T ss_conf 7335456998999999999998654--9976774896669998989999999876----499-98997388664699999
Q ss_pred --HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCC---C-CH-HHHHHHHCC
Q ss_conf --77899987643589769996545787069999999997698899975898132555---7-78-999998728
Q gi|254780709|r 245 --ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP---F-VA-KDFSAVITG 312 (321)
Q Consensus 245 --~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~---f-~~-~~~~~~llG 312 (321)
..+..+..++..++|-+++|-= +..+....-.|.++-.|+-++.=.| | +| ..|+.++||
T Consensus 173 ~~i~~~l~~l~~e~~~T~i~vTHd---------~~~a~~laDri~vm~~G~iv~~G~p~ei~~~P~~~~v~~flG 238 (239)
T cd03296 173 KELRRWLRRLHDELHVTTVFVTHD---------QEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSFLG 238 (239)
T ss_pred HHHHHHHHHHHHHHCCEEEEECCC---------HHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHCC
T ss_conf 999999999999859989999889---------999999699999998999999848899986899879998529
No 446
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.64 E-value=0.017 Score=37.90 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=32.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHHCC
Q ss_conf 412311354444424789999999852267426774345-124568899999753035
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt-fR~aA~eQL~~~a~~~~v 167 (321)
-.++.++|+||+||||.+-=++-.++-..-+|.+-..+. ...-....++.+..++|.
T Consensus 37 Ge~~aIiG~nGsGKSTL~~~l~Gll~p~~G~v~~~~~~i~~~~~~~~~~~~~r~~vG~ 94 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGL 94 (289)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCHHHHHHHHCCEEE
T ss_conf 9899999999957999999996598899985999999834765315578997636799
No 447
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.63 E-value=0.014 Score=38.32 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=37.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHH
Q ss_conf 3113544444247899999998522-67426774345124568
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAI 155 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~-g~kV~lva~DtfR~aA~ 155 (321)
-+++|+.|+||||-+-.|.+++..+ |..|++|+-|-+.+.+.
T Consensus 2 CVLcGLPaAGKTTLar~L~~~l~~~~gw~v~vI~YDdlIp~~~ 44 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAA 44 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHH
T ss_conf 0432698787368999999998644476058986212142545
No 448
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.63 E-value=0.068 Score=33.61 Aligned_cols=87 Identities=15% Similarity=0.300 Sum_probs=58.2
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH--
Q ss_conf 123113544444247899999998522674267743451245688999997530353212235866124542289999--
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-- 189 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a-- 189 (321)
+.+.+-|..|.|||--+-=+|++++..+.+|.-++++.|----++-|+. .+ ++.+
T Consensus 142 NPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F~~~~v~ai~~---------------~~--------~~~Fr~ 198 (455)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELFTEHLVSAIRS---------------GE--------MQRFRS 198 (455)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHC---------------CC--------HHHHHH
T ss_conf 8758878999978999999999853799869997499999999999975---------------88--------999999
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 65148759986543332115778999989987
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v 221 (321)
+-+++|++|||--=.+..+...-+|+--+.+.
T Consensus 199 ~yr~~DvLLIDDIQfl~gK~~tqeEff~tfN~ 230 (455)
T PRK12422 199 FYRNVDALFIEDIEVFSGKGATQEEFFHTFNS 230 (455)
T ss_pred HHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99638877631478872848899999999999
No 449
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.63 E-value=0.012 Score=39.01 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=26.6
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 12311354444424789999999852267426774345
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
.++.++|+||+||||.+-=|+..+.-..-+|.+-.-|.
T Consensus 34 E~vaivG~nGsGKSTL~k~l~Gl~~p~~G~I~i~G~~i 71 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVL 71 (279)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEC
T ss_conf 89999999996599999999728888896499999999
No 450
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.62 E-value=0.083 Score=32.99 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCCC------C-HHHH-------HHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 89769996545787------0-6999-------9999997698899975898132555778999998728
Q gi|254780709|r 257 GTTGLIMTKMDGTA------R-GGGL-------IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 (321)
Q Consensus 257 ~~~g~I~TKlD~ta------~-~G~~-------ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG 312 (321)
|+.++-+|=.|+.. + .+.. +--+.....|+.. |=|-.++..-|+.++..++|
T Consensus 577 Pv~~v~v~l~dg~~h~d~v~~~~~~~~~A~~~a~~~a~~~a~p~LL----EPi~~~eI~~P~~~~G~V~~ 642 (730)
T PRK07560 577 PVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLSAKPTLL----EPIQKVDINVPQDYMGAVTS 642 (730)
T ss_pred CCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE----CCCEEEEEEECHHHHHHHHH
T ss_conf 5566799999742115634456378999999999999987798898----56689999988899879999
No 451
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.01 Score=39.40 Aligned_cols=79 Identities=28% Similarity=0.419 Sum_probs=46.6
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC--CCCCCCCCCHH-HHHHHHHHH
Q ss_conf 231135444442478999999985226742677434512456889999975303532--12235866124-542289999
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF--VCSEIGSDAAA-LAYEAFKQA 189 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~--~~~~~~~dp~~-v~~~a~~~a 189 (321)
+|.+.|+.||||||-..+||.+|-. ..+-++++||-=|-| .|.++ |....++||-. ..-|.-+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl----~~vsaG~iFR~~A~e--------~gmsl~ef~~~AE~~p~iD~~iD~rq~e 69 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL----KLVSAGTIFREMARE--------RGMSLEEFSRYAEEDPEIDKEIDRRQKE 69 (179)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHCC----CEEECCHHHHHHHHH--------CCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 7996179999702799999998297----156212799999998--------3999999999875192166998899999
Q ss_pred HHHCCCEEEEECCCCCC
Q ss_conf 65148759986543332
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLH 206 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~ 206 (321)
-.+.-|+|+ .||+.
T Consensus 70 ~a~~~nvVl---egrLA 83 (179)
T COG1102 70 LAKEGNVVL---EGRLA 83 (179)
T ss_pred HHHCCCEEE---HHHHH
T ss_conf 987289587---00457
No 452
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.62 E-value=0.012 Score=38.93 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=84.0
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
.=+.+-|+.|+|||--+|-+|+.+.++|.+|+++...+| +.+|+.- |.. ++ ..+-++. .
T Consensus 158 kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~----~~~lK~s--------~~d--~s-----~~~~i~~--~ 216 (306)
T PRK08939 158 KGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEF----IRELKNA--------ISD--GS-----VKEKIDA--V 216 (306)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH----HHHHHHH--------HCC--CC-----HHHHHHH--H
T ss_conf 778898999998999999999999986992999875999----9999998--------648--98-----8999999--8
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 1487599865433321157789999899876302-223430112310233522577899987643589769996545787
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~-~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta 270 (321)
+++|++++|--|--....-..+|+--. +++.. ...-| +|+ .+.-.-+.++ +.|... . +-++.-
T Consensus 217 k~~~vLiLDDiGaE~~t~W~rd~vl~~--IL~~Rm~~~lP--Tff--TSN~~~~eLe--~~l~~~-~-------~~~e~~ 280 (306)
T PRK08939 217 KEAPVLMLDDIGAEQMSSWVRDEVLGV--ILQYRMQEELP--TFF--TSNFDFDELE--HHLAYT-Q-------RGDETV 280 (306)
T ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHH--HHHHHHHCCCC--EEE--ECCCCHHHHH--HHHHHC-C-------CCCCHH
T ss_conf 449989984446542677789989999--99999974999--799--7799999999--998632-6-------995379
Q ss_pred CHHHHHHHHHHHCCCEEEEEC
Q ss_conf 069999999997698899975
Q gi|254780709|r 271 RGGGLIPIVVTHKIPVYFLGV 291 (321)
Q Consensus 271 ~~G~~ls~~~~~~~Pi~fig~ 291 (321)
|+.-+.+=+..+-.||..-|-
T Consensus 281 ka~RimeRI~~l~~~v~l~G~ 301 (306)
T PRK08939 281 KAARIMERIRYLAKEVHLEGK 301 (306)
T ss_pred HHHHHHHHHHHHCEEEEECCC
T ss_conf 999999999985735871477
No 453
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.62 E-value=0.0062 Score=40.89 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=29.0
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 1231135444442478999999985226742677434512
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
.++.++||||+||||++-=|+-..+...-+|.+-.-|.++
T Consensus 32 ei~gllG~NGAGKTTllk~l~Gl~~p~~G~i~i~G~~~~~ 71 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK 71 (293)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 5999989999989999999967977886499995862751
No 454
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.0098 Score=39.51 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=26.6
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 74123113544444247899999998522674267
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~l 144 (321)
+-.++.++||||+||||++-=|+-.++-..-+|.+
T Consensus 25 ~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~i~i 59 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59 (210)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 99599999899984999999996002668998999
No 455
>PRK06921 hypothetical protein; Provisional
Probab=95.62 E-value=0.13 Score=31.74 Aligned_cols=69 Identities=26% Similarity=0.317 Sum_probs=43.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4123113544444247899999998522-674267743451245688999997530353212235866124542289999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~-g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
-+-++|.|..|+|||--+.=+|+.+.++ |.+|+....- ..+..|+.--+ . ...-++
T Consensus 116 ~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~----~~~~~lk~~~~---------~--------~~~~l~-- 172 (265)
T PRK06921 116 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV----EGFGDLKDDFD---------L--------LEAKLN-- 172 (265)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHH----HHHHHHHHHHH---------H--------HHHHHH--
T ss_conf 662799728989889999999999999629719998879----99999998888---------8--------999999--
Q ss_pred HHHCCCEEEEECC
Q ss_conf 6514875998654
Q gi|254780709|r 190 QAKKVDVLIIDTA 202 (321)
Q Consensus 190 ~~~~~DvvliDTA 202 (321)
..+++|+++||-=
T Consensus 173 ~~~~~dlLIIDDL 185 (265)
T PRK06921 173 RMKKVEVLFIDDL 185 (265)
T ss_pred HHHCCCEEEEECC
T ss_conf 8632999998221
No 456
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=95.61 E-value=0.009 Score=39.78 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=29.5
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 412311354444424789999999852267426774345
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
-.++.++||||+||||++-=|+-.++...-+|.+--.|.
T Consensus 29 Gei~~liGpNGaGKSTLl~~i~Gl~~~~~G~I~i~g~~i 67 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI 67 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
T ss_conf 979999889998699999999678888876277634523
No 457
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=95.59 E-value=0.043 Score=35.03 Aligned_cols=90 Identities=26% Similarity=0.310 Sum_probs=51.2
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHH--CCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 12311354444424789999999852--267-426774345124568899999753035321223586612454228999
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSD--AGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~--~g~-kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~ 188 (321)
.|+++-|..|+|||--.-.|.+.+.. .+. .+.+..--.++---.++|.. ..+...- ....-|.+.. +.+.
T Consensus 2 ~v~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l~~---~~~~~~~--~~~~~~~~fi-~~~~- 74 (348)
T pfam09848 2 AVFLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAG---DLKVRKK--KLFRKPTSFI-NNLH- 74 (348)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH---HCCHHHC--CCCCCCHHHH-CCCC-
T ss_conf 7999977799389999999999986440268208995786699999999860---4120010--2000725231-6523-
Q ss_pred HHHHCCCEEEEECCCCCCCH
Q ss_conf 96514875998654333211
Q gi|254780709|r 189 AQAKKVDVLIIDTAGRLHNN 208 (321)
Q Consensus 189 a~~~~~DvvliDTAGR~~~~ 208 (321)
.....+||||+|-|=|+.+.
T Consensus 75 ~~~~~~dvvivDEAhRl~~k 94 (348)
T pfam09848 75 KAPPHEDVVIVDEAHRLWTK 94 (348)
T ss_pred CCCCCCCEEEEEHHHHHHHC
T ss_conf 57986778998317866543
No 458
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.039 Score=35.27 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=25.6
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6674123113544444247899999998522
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~ 138 (321)
..-|+.++|+||.|+||+|++-.+|..+...
T Consensus 23 ~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~ 53 (314)
T PRK07399 23 NRIAPAYLFAGPEGVGRKLAALRFIEGLLSQ 53 (314)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 9967448778999832999999999998578
No 459
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.59 E-value=0.12 Score=31.91 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4123113544444247899999998522674267
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~l 144 (321)
-..+.+||++|+||||.+-=|..+|.-..-+|.+
T Consensus 30 G~~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i 63 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLL 63 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9999999999985999999996725478658999
No 460
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.59 E-value=0.0084 Score=39.97 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=32.9
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 412311354444424789999999852267426774345124
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~ 152 (321)
-.++.++||||+||||-+-=|+..++-+.-.|.+-..|.++-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~~~l~p~~G~V~l~g~~i~~~ 69 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASL 69 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHC
T ss_conf 979999899888999999998656788887799999724546
No 461
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.59 E-value=0.0078 Score=40.21 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=25.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4123113544444247899999998522674267
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~l 144 (321)
-.++-++||||+||||++-=|+-.+.-..-+|.+
T Consensus 28 Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G~i~i 61 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61 (301)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 8199999999981999999996795689777999
No 462
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.57 E-value=0.24 Score=29.75 Aligned_cols=148 Identities=22% Similarity=0.320 Sum_probs=81.6
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
.+|.+||=+-|||.|---.|+ |+++++|+ +.-|+. .|+. | ..++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~----------------D~pGvT-------RDr~---y---~~~~~ 48 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVS----------------DTPGVT-------RDRI---Y---GDAEW 48 (444)
T ss_pred CEEEEECCCCCCHHHHHHHHH------CCEEEEEE----------------CCCCCC-------CCCC---C---CEEEE
T ss_conf 789998999875899998875------77026760----------------699975-------5775---4---50698
Q ss_pred HCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH--HHHHHHHHCCCCEEEEECCCC
Q ss_conf 14875998654333211-577899998998763022234301123102335225778--999876435897699965457
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR--QVEMFHAVAGTTGLIMTKMDG 268 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~-~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~--~a~~F~~~~~~~g~I~TKlD~ 268 (321)
.+..+.+|||+|=-+.+ ..+..++..-.... . ..-+-++||+|+-.|-...+ .|+.+...-...=+++-|.|+
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A--i--~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~ 124 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIA--I--EEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDN 124 (444)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH--H--HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 38607999789977688128999999999999--9--7679999998488789978999999998539988999976667
Q ss_pred CCCHHHHHHHHHHHCCCE-EEEE--CCCCCCCCC
Q ss_conf 870699999999976988-9997--589813255
Q gi|254780709|r 269 TARGGGLIPIVVTHKIPV-YFLG--VGEGINDLE 299 (321)
Q Consensus 269 ta~~G~~ls~~~~~~~Pi-~fig--~Ge~i~Dl~ 299 (321)
- +.=....-.|.+|..= .-|+ .|+.++||.
T Consensus 125 ~-~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 125 L-KAEELAYEFYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred C-HHHHHHHHHHHCCCCCCEEEEHHHCCCHHHHH
T ss_conf 3-04564899986478982684255356989999
No 463
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.57 E-value=0.11 Score=32.24 Aligned_cols=140 Identities=21% Similarity=0.303 Sum_probs=74.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
.-|+++|-.|||||+-+-++... .|- ..|...+|+++..... -. ..
T Consensus 3 ~Kiv~vGd~~vGKTsli~r~~~~--------------~f~-------~~y~~Tig~~~~~~~i-------~~------~~ 48 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADD--------------TYT-------ESYISTIGVDFKIRTI-------EL------DG 48 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC--------------CCC-------CCCCCCCCEEEEEEEE-------EE------CC
T ss_conf 99999999997899999999439--------------999-------8747854404899999-------99------99
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC----C--CC-EEEEE
Q ss_conf 14875998654333211577899998998763022234301123102335225778999876435----8--97-69996
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA----G--TT-GLIMT 264 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~----~--~~-g~I~T 264 (321)
+.+.+-|.||||.-.... +.... -...+-.++|.|.+. .++++.++.+.+.+ + +. -+|-+
T Consensus 49 ~~~~l~iwDtaG~e~~~~-----~~~~~-------~~~a~~~ilvfdit~-~~Sf~~i~~w~~~i~~~~~~~~~~ilvgN 115 (166)
T cd01869 49 KTIKLQIWDTAGQERFRT-----ITSSY-------YRGAHGIIIVYDVTD-QESFNNVKQWLQEIDRYASENVNKLLVGN 115 (166)
T ss_pred EEEEEEEEECCCCCCCCC-----CHHHH-------HHHCCEEEEEECCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999999998999823462-----67888-------563267799711799-89999999999999986787774488613
Q ss_pred CCCC-CCC---HHHHHHHHHHHCCCEEEEEC--CCCCCCC
Q ss_conf 5457-870---69999999997698899975--8981325
Q gi|254780709|r 265 KMDG-TAR---GGGLIPIVVTHKIPVYFLGV--GEGINDL 298 (321)
Q Consensus 265 KlD~-ta~---~G~~ls~~~~~~~Pi~fig~--Ge~i~Dl 298 (321)
|.|- ..| .-.+-..+...+.|...++. |++|+++
T Consensus 116 K~DL~~~r~v~~~~~~~~a~~~~~~~~E~SAk~g~nI~e~ 155 (166)
T cd01869 116 KCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 2011314667999999999983996999876878068999
No 464
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.57 E-value=0.018 Score=37.71 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=26.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 41231135444442478999999985226742677
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lv 145 (321)
-.++.++|+||+||||.+-=|+-.++-..-+|.+-
T Consensus 32 Ge~~aiiG~NGaGKSTLl~~i~Gll~p~~G~I~~~ 66 (285)
T PRK13636 32 GEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFD 66 (285)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 98999999999809999999965988886089999
No 465
>pfam00265 TK Thymidine kinase.
Probab=95.56 E-value=0.046 Score=34.79 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=49.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2311354444424789999999852267426774--34512456889999975303532122358661245422899996
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA--GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva--~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
+-+++||=-|||||-+-..+++++..|++|+++. .|| |-+. ..+. .+.|+..-+.....+ .. .-+....
T Consensus 3 L~~i~GpMfsGKTteLi~~~~~~~~~gkkvl~i~p~~D~-R~~~-~~i~---Sh~g~~~~~~~~~~~---~~-~~~~~~~ 73 (175)
T pfam00265 3 IELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAIDN-RYGT-GKVV---THDGISMEAKLIKTS---LL-DDIKDII 73 (175)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCC-CEEE---CCCCCCCCCEECCCC---HH-HHHHHHH
T ss_conf 999992517789999999999999879939999461127-7899-9698---899981145673653---19-9999864
Q ss_pred HHCCCEEEEECCC
Q ss_conf 5148759986543
Q gi|254780709|r 191 AKKVDVLIIDTAG 203 (321)
Q Consensus 191 ~~~~DvvliDTAG 203 (321)
.+.+|+|+||-|=
T Consensus 74 ~~~~dvI~IDEaQ 86 (175)
T pfam00265 74 SNTIHVVGIDEAQ 86 (175)
T ss_pred CCCCCEEEEEHHH
T ss_conf 3687899983377
No 466
>COG1084 Predicted GTPase [General function prediction only]
Probab=95.56 E-value=0.24 Score=29.73 Aligned_cols=240 Identities=18% Similarity=0.217 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHCC---CCCHHHHHH
Q ss_conf 999999999999999860567-7899--99999999999738------89899999999999875127---899899999
Q gi|254780709|r 19 KGFASTSLKLKEGITDIISSR-RLDD--GVREELEDLLIRSD------IGVAVAQKIVEELLTKRYAK---DVSVQRVLY 86 (321)
Q Consensus 19 ~gL~kt~~~L~~~l~~l~~~~-~lde--~~leeLee~LL~AD------Vg~~va~~Iie~ik~~~~~~---~i~~~~i~~ 86 (321)
..+....+.+.+.+.++..+- .+|+ .+..||-++|..-| -.++.|..+++++.++.... .-+..+...
T Consensus 49 ~rv~t~~~i~~d~l~~iv~~~P~id~LhpFY~eLidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~ 128 (346)
T COG1084 49 RRVKTASNIVRDRLDKIVERFPSLDDLHPFYRELIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQ 128 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999999999999984888432685899999999478999999999779999999999999998742798668999
Q ss_pred HHHHHH---HHHCCCCCCCCC-----------CC-CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 999987---852010012100-----------01-366741231135444442478999999985226742677434512
Q gi|254780709|r 87 DVSELI---HKMLMPLSKPFN-----------WD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 87 ~l~~~L---~~~L~~~~~~~~-----------~~-~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
..++.. .+++......+. ++ .......|+++|..-|||+|-+.||- +.+|=++
T Consensus 129 lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT------~AkpEvA------ 196 (346)
T COG1084 129 LRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLT------TAKPEVA------ 196 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHH------CCCCCCC------
T ss_conf 9999987899999986278999999999985088779999738985699875899998875------4897667------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 45688999997530353212235866124542289999651487599865433321157789999899876302223430
Q gi|254780709|r 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 (321)
Q Consensus 152 ~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~ 231 (321)
.-||- +...- +.++.....-+=+|||.|=|-...+-|+++.+-.-. .. ..--.
T Consensus 197 --------------~YPFT-----TK~i~-----vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~--AL-~hl~~ 249 (346)
T COG1084 197 --------------PYPFT-----TKGIH-----VGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL--AL-RHLAG 249 (346)
T ss_pred --------------CCCCC-----CCCEE-----EEEEECCCCEEEEECCCCCCCCCHHHHCHHHHHHHH--HH-HHHCC
T ss_conf --------------88853-----36546-----765504870589842886457885773689999999--99-97428
Q ss_pred EEEEECCC--CCCHHHHHHHHHHHHHCC----CCEEEEECCCCCCCH---HHHHHHHHHHCC-CEEEEECCCCCCC
Q ss_conf 11231023--352257789998764358----976999654578706---999999999769-8899975898132
Q gi|254780709|r 232 SVLQVLDA--TTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG---GGLIPIVVTHKI-PVYFLGVGEGIND 297 (321)
Q Consensus 232 ~~~lVlda--~~gq~~~~~a~~F~~~~~----~~g~I~TKlD~ta~~---G~~ls~~~~~~~-Pi~fig~Ge~i~D 297 (321)
-+++++|+ +.|...-.|..-|++.-+ ..=++++|.|-.... -...++....+. |+.-..+.....|
T Consensus 250 ~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 325 (346)
T COG1084 250 VILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLD 325 (346)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHH
T ss_conf 5899976850028999999999999998538876999741012466678999999876326554313543000178
No 467
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.56 E-value=0.057 Score=34.15 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=75.2
Q ss_pred EEECCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHH
Q ss_conf 2311354444424789999999-852267426774345124568899999753035321223---586612454228999
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE---IGSDAAALAYEAFKQ 188 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~-~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~---~~~dp~~v~~~a~~~ 188 (321)
-|+++|-.|||||+-+-.+... |.. ...+ -+|+++.... ...+|....
T Consensus 6 KivvvGd~~VGKTsli~r~~~~~f~~-~y~~---------------------Tig~~~~~k~i~~~~~~~~~~~------ 57 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFNP-KFIT---------------------TVGIDFREKRVVYNSSGPGGTL------ 57 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCCC---------------------CCCEEEEEEEEEECCCCCCCCC------
T ss_conf 99999999988899999996195899-8688---------------------4322688999998476554445------
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-------CCC-E
Q ss_conf 96514875998654333211577899998998763022234301123102335225778999876435-------897-6
Q gi|254780709|r 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-------GTT-G 260 (321)
Q Consensus 189 a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~-------~~~-g 260 (321)
.+.+.+.+-|.||||.-.. ..|.... . ...+-.+||.|.+.. ++++.++.+.+.+ ... -
T Consensus 58 ~~~~~v~l~iwDtaGqe~~-----~~l~~~~--~-----~~a~~~ilvydit~~-~Sf~~l~~w~~~i~~~~~~~~~~ii 124 (180)
T cd04127 58 GRGQRIHLQLWDTAGQERF-----RSLTTAF--F-----RDAMGFLLIFDLTNE-QSFLNVRNWMSQLQTHAYCENPDIV 124 (180)
T ss_pred CCCCEEEEEEEECCCCHHH-----HHHHHHH--H-----HHHCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 7885899999989886304-----7888999--8-----754365899968988-9999899999999985466898578
Q ss_pred EEEECCCC-C---CCHHHHHHHHHHHCCCEEEEEC--CCCCCCCC
Q ss_conf 99965457-8---7069999999997698899975--89813255
Q gi|254780709|r 261 LIMTKMDG-T---ARGGGLIPIVVTHKIPVYFLGV--GEGINDLE 299 (321)
Q Consensus 261 ~I~TKlD~-t---a~~G~~ls~~~~~~~Pi~fig~--Ge~i~Dl~ 299 (321)
+|-+|.|= . -...-+-..+...+.|...++. |++|+++-
T Consensus 125 lVGNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~nV~e~F 169 (180)
T cd04127 125 LCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAV 169 (180)
T ss_pred EECCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 750323667508889999999999849979998037791989999
No 468
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.079 Score=33.14 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=71.7
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH--HHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245--4228
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL--AYEA 185 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v--~~~a 185 (321)
..-|+-++|.|+.|+||.+.+-.+|.++.-++.. ..-+|..-+. =++-.-+..-++-++..+.++....| +++-
T Consensus 21 ~rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~-~~~~Cg~C~~---C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~l 96 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQ-GHKSCGHCRG---CQLMQAGTHPDYYTLTPEKGKSSLGVDAVREV 96 (334)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCHH---HHHHHCCCCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 9810467547999988999999999998189999-9999999978---99986689998477534223455999999999
Q ss_pred HHHH----HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 9999----6514875998654333211577899998998763022234301123102335225778999
Q gi|254780709|r 186 FKQA----QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 (321)
Q Consensus 186 ~~~a----~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~ 250 (321)
.+.+ ...++-|++||-|-||..... +-| =|..++.|..+++++=+...+.-...+.
T Consensus 97 ~~~~~~~~~~g~~kV~iI~~Ae~mn~~Aa--NaL-------LKtLEEPp~~t~~iL~t~~~~~lLpTI~ 156 (334)
T PRK07993 97 TEKLYEHARLGGAKVVWLPDAALLTDAAA--NAL-------LKTLEEPPEKTWFFLACREPARLLATLR 156 (334)
T ss_pred HHHHHHCCCCCCCEEEEECCHHHHCHHHH--HHH-------HHHHCCCCCCEEEEEECCCHHHCCCHHH
T ss_conf 99984366569947999766777599999--999-------9861279988499986698565723887
No 469
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.55 E-value=0.0071 Score=40.48 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=25.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4123113544444247899999998522674267
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~l 144 (321)
-.++.++||||+||||++-=++-.++...-+|.+
T Consensus 25 Ge~~~liGpNGaGKSTllk~i~Gl~~p~~G~i~i 58 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9899999999986999999997687889758999
No 470
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=95.55 E-value=0.027 Score=36.41 Aligned_cols=84 Identities=27% Similarity=0.358 Sum_probs=51.4
Q ss_pred CCEEECCC---CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC----------------HHHHHHHHHHHHHHCCCCCC
Q ss_conf 41231135---444442478999999985226742677434512----------------45688999997530353212
Q gi|254780709|r 111 PHVILVVG---VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR----------------SAAIDQLKIWADRTSADFVC 171 (321)
Q Consensus 111 p~vil~vG---~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR----------------~aA~eQL~~~a~~~~v~~~~ 171 (321)
|..+..|| +-|.|||-++-=||..++..|.+|++++=.-=+ -+.=|-| .+|.+.+.|+..
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg~~~~~~~~~~~~~~a~~~GDEPl-LlA~~t~~pv~v 124 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGGKLKVVPLVDNIHTTAAEVGDEPL-LLARRTGAPVAV 124 (336)
T ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCHHH-HHHHHCCCCEEE
T ss_conf 8878998557777899688999999999866973679805768887654102567678677284688-875533996898
Q ss_pred CCCCCCCHHHHHHHHHHHHH--HCCCEEEEECC
Q ss_conf 23586612454228999965--14875998654
Q gi|254780709|r 172 SEIGSDAAALAYEAFKQAQA--KKVDVLIIDTA 202 (321)
Q Consensus 172 ~~~~~dp~~v~~~a~~~a~~--~~~DvvliDTA 202 (321)
++.. ++++..+.+ .++|+|+.|-.
T Consensus 125 ~~~R-------~~~~~~l~~~~~~~diIi~DDG 150 (336)
T COG1663 125 SPDR-------KDAAKALLAAHLGCDIIVLDDG 150 (336)
T ss_pred EHHH-------HHHHHHHHHHCCCCCEEEECCC
T ss_conf 6429-------8999999851789899997674
No 471
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.018 Score=37.69 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=35.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 412311354444424789999999852267426774345124568899999753035
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
-.++.++|+||+||||.+-=|+-.++-..-+|.+-.-|..... ..++.+..++|+
T Consensus 33 GE~v~iiG~nGsGKSTLl~~l~GLl~p~~G~V~i~G~~i~~~~--~~~~~~r~~iG~ 87 (287)
T PRK13637 33 GEFVALIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK--VKLSDIRKKVGL 87 (287)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCC--CCHHHHHHCEEE
T ss_conf 9899999999939999999997399888726999999987888--677888741789
No 472
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.52 E-value=0.082 Score=33.03 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=25.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 41231135444442478999999985226742677
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lv 145 (321)
-.++.++||+|+||||.+-=+|-..+-..-+|.+-
T Consensus 26 Ge~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~ 60 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 98999999998809999999976999986399999
No 473
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.52 E-value=0.011 Score=39.28 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=29.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 2311354444424789999999852267426774345124
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~ 152 (321)
||.+.|..||||||-+.+|...+. .+.++..|.|=-
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~----~~~iI~qDdyYk 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC----CCEEECCCCCCC
T ss_conf 989968888759999999999879----988971544678
No 474
>PRK00049 elongation factor Tu; Reviewed
Probab=95.49 E-value=0.076 Score=33.27 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=68.4
Q ss_pred CCCC-EEECCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 6741-2311354444424789999999852-2674267743451245688999997530353212235866124542289
Q gi|254780709|r 109 HRPH-VILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 109 ~~p~-vil~vG~nG~GKTTT~aKLA~~~~~-~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
.+|+ .|.++|==-+||||.++-|...+.. .|+.-.-...+ .++++.=-+| |+.+ |.+..-
T Consensus 9 ~kp~~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~------~D~~~eEr~r-GiTi-------d~~~~~---- 70 (397)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQ------IDNAPEEKAR-GITI-------NTAHVE---- 70 (397)
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH------CCCCHHHHHC-CCEE-------EEEEEE----
T ss_conf 998329999912588899999999866665438531001333------0257667625-8169-------987999----
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHCCCCEEE--
Q ss_conf 9996514875998654333211577899998998763022234301123102335225--778999876435897699--
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVAGTTGLI-- 262 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~~~~g~I-- 262 (321)
+..+++.+-+||.+|. +..+ ++.+. .....|-.+||+||..|-- ..+.+. ....+++.-+|
T Consensus 71 --~~t~~~~~~~iD~PGH----~~fi------knmI~--Ga~~~D~alLVV~A~~G~~~QT~EHl~-l~~~LGv~~~iV~ 135 (397)
T PRK00049 71 --YETEKRHYAHVDCPGH----ADYV------KNMIT--GAAQMDGAILVVSAADGPMPQTREHIL-LARQVGVPYIVVF 135 (397)
T ss_pred --EECCCCEEEEECCCCH----HHHH------HHHHH--HHCCCCEEEEEEECCCCCCHHHHHHHH-HHHHHCCCEEEEE
T ss_conf --9728814999517863----8889------99873--012156799999748886652899999-9998099827999
Q ss_pred EECCCCCC
Q ss_conf 96545787
Q gi|254780709|r 263 MTKMDGTA 270 (321)
Q Consensus 263 ~TKlD~ta 270 (321)
+||+|-..
T Consensus 136 vnK~D~v~ 143 (397)
T PRK00049 136 LNKCDMVD 143 (397)
T ss_pred EECCCCCC
T ss_conf 98668888
No 475
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.49 E-value=0.13 Score=31.67 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=52.0
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH---HHHHHH
Q ss_conf 123113544444247899999998522674--267743451245688999997530353212235866124---542289
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLK--VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA---LAYEAF 186 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~k--V~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~---v~~~a~ 186 (321)
.-++++|.-|+||||-+..+++....++.. +.++..+ -|.--+..+ -+.+.-.++.......|.. +++-|+
T Consensus 17 QR~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIG-ER~rEv~e~---~~~~~~~vv~st~d~~p~~r~~~a~~a~ 92 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLID-ERPEEVTDM---QRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEE-CCHHHHHHH---HHHHCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 677887899988999999999999985898499999971-657999999---9971616999569999899999999999
Q ss_pred ---HHHHHHCCCEEEE-ECCCC
Q ss_conf ---9996514875998-65433
Q gi|254780709|r 187 ---KQAQAKKVDVLII-DTAGR 204 (321)
Q Consensus 187 ---~~a~~~~~Dvvli-DTAGR 204 (321)
+|+..++.||+++ |.-=|
T Consensus 93 ~iAEyfr~~G~dVLl~~DslTR 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEHHHHH
T ss_conf 9999999879977999514889
No 476
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.48 E-value=0.071 Score=33.46 Aligned_cols=28 Identities=25% Similarity=0.550 Sum_probs=22.8
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6741231135444442478999999985
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS 136 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~ 136 (321)
..|.=+|++||+|+|||-++-=+|..+.
T Consensus 257 ~~PkGvLL~GpPG~GKtl~AKAvA~e~~ 284 (491)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANEWN 284 (491)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9998799979999878999999986638
No 477
>pfam00205 TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain. The central domain of TPP enzymes contains a 2-fold Rossman fold.
Probab=95.46 E-value=0.053 Score=34.37 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999998522674267743451245688999997530353212235866
Q gi|254780709|r 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 (321)
Q Consensus 129 aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d 177 (321)
.+++..+++..+-++++.....|.+|.++|+.+++++++|++....+.+
T Consensus 2 ~~~~~~l~~AkrPvii~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~~ 50 (138)
T pfam00205 2 EKAAELLAAAKRPVILVGGGVRRSGASEELRALAEKLGIPVVTTLMGKG 50 (138)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 8999999968991999897835221899999999984998792111256
No 478
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.45 E-value=0.17 Score=30.81 Aligned_cols=138 Identities=17% Similarity=0.245 Sum_probs=70.9
Q ss_pred EEECCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2311354444424789999999-852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~-~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
-|+++|-.|||||+-+-++... |..+ .. .-+|+++..... . . ..
T Consensus 2 Kivl~Gd~~vGKTsli~r~~~~~f~~~-~~---------------------~Tig~~~~~k~~-----~--~------~~ 46 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED-SQ---------------------HTIGVEFGSKII-----R--V------GG 46 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC-CC---------------------CCCCEEEEEEEE-----E--E------CC
T ss_conf 899999499679999999972989998-79---------------------976457899999-----9--9------99
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC----C--CC-EEEEE
Q ss_conf 14875998654333211577899998998763022234301123102335225778999876435----8--97-69996
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA----G--TT-GLIMT 264 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~----~--~~-g~I~T 264 (321)
+.+.+-|.||||.-.. ..+.+. +. ...+-.++|.|.+. +++.+.+..+.+.+ + +. =+|-+
T Consensus 47 ~~~~l~iwDtaG~e~~-----~~~~~~------~~-~~a~~~ilvydit~-~~Sf~~~~~w~~~i~~~~~~~~~iilVgN 113 (161)
T cd04113 47 KRVKLQIWDTAGQERF-----RSVTRS------YY-RGAAGALLVYDITN-RTSFEALPTWLSDARALASPNIVVILVGN 113 (161)
T ss_pred EEEEEEEEECCCCHHH-----HHHHHH------HH-HCCCEEEEECCCCC-HHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 9999999989997012-----267899------84-05777899536898-89999999999999986799964986034
Q ss_pred CCCC-CCC---HHHHHHHHHHHCCCEEEEE--CCCCCCCC
Q ss_conf 5457-870---6999999999769889997--58981325
Q gi|254780709|r 265 KMDG-TAR---GGGLIPIVVTHKIPVYFLG--VGEGINDL 298 (321)
Q Consensus 265 KlD~-ta~---~G~~ls~~~~~~~Pi~fig--~Ge~i~Dl 298 (321)
|.|- ..| .--+-..+...+.|...++ +|++|+++
T Consensus 114 K~Dl~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV~e~ 153 (161)
T cd04113 114 KSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEA 153 (161)
T ss_pred CCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 3440003788999999999985997999741569058999
No 479
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.017 Score=37.83 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=32.1
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 412311354444424789999999852267426774345124568899999753035
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
-.++.++|+||+||||++-=|+-.++-..-+|.+-.-+... --.++..+..++|.
T Consensus 28 Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G~I~v~G~~i~~--~~~~~~~~r~~vg~ 82 (275)
T PRK13639 28 GEMIAILGPNGAGKSTLFLHFNGILKPSSGSVLIKGEPIKY--DKKSLLNVRKTVGI 82 (275)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC--CCHHHHHHHHHCEE
T ss_conf 98999999999649999999973989996399999999988--80659999874159
No 480
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.44 E-value=0.011 Score=39.22 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=30.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 41231135444442478999999985226742677434512
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
-.++.++||||+||||++-=|+-.++-..-+|.+--.|..+
T Consensus 26 Gei~gllG~NGaGKSTLl~~i~Gl~~p~~G~i~i~G~~~~~ 66 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK 66 (208)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf 81999999999999999999957837898999999999997
No 481
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.44 E-value=0.0083 Score=40.00 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=28.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 41231135444442478999999985226742677434
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D 148 (321)
-.++.++||||+||||.+-=|+-.++-..-+|.+-..|
T Consensus 27 G~i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~~~~~~ 64 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQS 64 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
T ss_conf 97999988999879999999977858898569999986
No 482
>COG1159 Era GTPase [General function prediction only]
Probab=95.43 E-value=0.27 Score=29.41 Aligned_cols=148 Identities=19% Similarity=0.330 Sum_probs=79.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
..-+.++|.+-|||.|-+-.| -|.|+.+++-=. | .-|..|.-+..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l------~G~KisIvS~k~-------Q----TTR~~I~GI~t------------------ 50 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNAL------VGQKISIVSPKP-------Q----TTRNRIRGIVT------------------ 50 (298)
T ss_pred EEEEEEECCCCCCHHHHHHHH------HCCCEEEECCCC-------C----HHHHHEEEEEE------------------
T ss_conf 899999869987689999898------568257515985-------3----11442147998------------------
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 514875998654333211577899998998763022234301123102335225--77899987643-589769996545
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAV-AGTTGLIMTKMD 267 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~-~~~~g~I~TKlD 267 (321)
..++.+|+|||.|= |.....+.++ |.+.+.... ...+-++||+||+-+.. .-.+.+...+. .| -=++++|.|
T Consensus 51 ~~~~QiIfvDTPGi-h~pk~~l~~~--m~~~a~~sl-~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID 125 (298)
T COG1159 51 TDNAQIIFVDTPGI-HKPKHALGEL--MNKAARSAL-KDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKID 125 (298)
T ss_pred CCCCEEEEEECCCC-CCCCHHHHHH--HHHHHHHHH-CCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCC-EEEEEECCC
T ss_conf 69844999848988-8765178899--999999872-457599999866656891079999977643898-699998402
Q ss_pred CCCCHHHHHHHHHHHC--C---CEEEEEC--CCCCCCC
Q ss_conf 7870699999999976--9---8899975--8981325
Q gi|254780709|r 268 GTARGGGLIPIVVTHK--I---PVYFLGV--GEGINDL 298 (321)
Q Consensus 268 ~ta~~G~~ls~~~~~~--~---Pi~fig~--Ge~i~Dl 298 (321)
-...--.+++...... . .|..|+. |.+++.|
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L 163 (298)
T COG1159 126 KVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTL 163 (298)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 57847789999999985088301799510156788999
No 483
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.41 E-value=0.083 Score=32.98 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 412311354444424789999999852
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSD 137 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~ 137 (321)
-.++.++||+|+||||++-=+|-...-
T Consensus 32 Ge~~~llGpSG~GKTTlLr~iaGl~~p 58 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP 58 (351)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 989999999964999999999769998
No 484
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.0075 Score=40.31 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=30.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 41231135444442478999999985226742677434512
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR 151 (321)
+.++.++||||+||||++-=|+-.++-..-+|.+--.|..+
T Consensus 25 ~Gi~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g~~~~~ 65 (211)
T cd03264 25 PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK 65 (211)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC
T ss_conf 97599999998239999999975966896299999999661
No 485
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.40 E-value=0.034 Score=35.71 Aligned_cols=88 Identities=23% Similarity=0.306 Sum_probs=48.6
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE---EECCCCCHHH-------------HHHHHHHHHHHCC-CCCC
Q ss_conf 674123113544444247899999998522674267---7434512456-------------8899999753035-3212
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML---AAGDTFRSAA-------------IDQLKIWADRTSA-DFVC 171 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~l---va~DtfR~aA-------------~eQL~~~a~~~~v-~~~~ 171 (321)
.+..++.++||.||||||-+-+|...+.. +..+ .++=.-|++= ++++..-++=+.- .++.
T Consensus 5 ~~g~livisGPSG~GK~tl~~~L~~~~p~---~~~~~vs~TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~FlE~~~~~g 81 (208)
T PRK00300 5 RRGLLIVLSAPSGAGKSTLVRALLERDPN---DLQLSVSATTRAPRPGEVDGVHYHFVSREEFEEMIENGEFLEWAEVFG 81 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC---CEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEECC
T ss_conf 18838999999988999999999972998---689989746889899877896579961999999986283667899838
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEE-EECCCC
Q ss_conf 235866124542289999651487599-865433
Q gi|254780709|r 172 SEIGSDAAALAYEAFKQAQAKKVDVLI-IDTAGR 204 (321)
Q Consensus 172 ~~~~~dp~~v~~~a~~~a~~~~~Dvvl-iDTAGR 204 (321)
..+|.- +++++.+..+|.++|+ ||.-|=
T Consensus 82 ~~YGT~-----~~~I~~~~~~G~~vildidvqGa 110 (208)
T PRK00300 82 NYYGTP-----REPVEEALAAGKDVLLEIDWQGA 110 (208)
T ss_pred CCEECC-----HHHHHHHHHCCCCEEEECCHHHH
T ss_conf 703524-----69999998569987974678999
No 486
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.39 E-value=0.074 Score=33.35 Aligned_cols=130 Identities=16% Similarity=0.152 Sum_probs=63.8
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH--HHCCCCCCCC------------
Q ss_conf 66741231135444442478999999985226742677434512456889999975--3035321223------------
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSADFVCSE------------ 173 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~--~~~v~~~~~~------------ 173 (321)
..-|+-++|.||.|+||.+.+-.+|.++.-++...---+|.+-+. -+.+.. .=++-++..+
T Consensus 18 ~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~s-----C~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~ 92 (342)
T PRK06964 18 ARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAA-----CTWFAQGNHPDYRIVRPEALAAEAPGAADD 92 (342)
T ss_pred CCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHH-----HHHHHCCCCCCEEEECCCHHCCCCCCCCCH
T ss_conf 871305765799986799999999999838999988897867777-----888862799974553400210223332100
Q ss_pred --------CC------C--CCHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf --------58------6--61245422899996----5148759986543332115778999989987630222343011
Q gi|254780709|r 174 --------IG------S--DAAALAYEAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 (321)
Q Consensus 174 --------~~------~--dp~~v~~~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~ 233 (321)
.+ + -.+.-+++-.+... ..++-|++||-|-+|..... +-| =|..+..|..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aa--Nal-------LK~LEEPp~~~ 163 (342)
T PRK06964 93 AKAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAA--NAL-------LKTLEEPPPGV 163 (342)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHH--HHH-------HHHHCCCCCCE
T ss_conf 101112221012356556454999999999970075458844999827787389999--999-------99723798784
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 231023352257789998
Q gi|254780709|r 234 LQVLDATTGQNALRQVEM 251 (321)
Q Consensus 234 ~lVlda~~gq~~~~~a~~ 251 (321)
++++=+...+..+..+..
T Consensus 164 ~~iL~~~~~~~llpTI~S 181 (342)
T PRK06964 164 VFLLVSARIDRLLPTILS 181 (342)
T ss_pred EEEEEECCHHHCCHHHHH
T ss_conf 899986992548368876
No 487
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.094 Score=32.61 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=28.6
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 412311354444424789999999852267426774345
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
-..+.++|+||+||||-+-=|+..++-..-+|.+-..|.
T Consensus 28 Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 66 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL 66 (171)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEC
T ss_conf 989999999998399999999767758974899999998
No 488
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.13 Score=31.66 Aligned_cols=94 Identities=17% Similarity=0.301 Sum_probs=53.6
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC-C-EEEEECCCCCH--HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 67412311354444424789999999852267-4-26774345124--56889999975303532122358661245422
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-K-VMLAAGDTFRS--AAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~-k-V~lva~DtfR~--aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~ 184 (321)
..|.-+++.|++|+|||+|+-.++..++..-. . +.-|-|=.++- +.+.+ .|....++|.. .+|..-.++
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~--i~~~~~~~p~~-----g~~~~~~~~ 112 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK--ILNKLGKVPLT-----GDSSLEILK 112 (366)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHH--HHHHHCCCCCC-----CCCHHHHHH
T ss_conf 99860799889998732899999999973315675799951307878799999--99982689976-----763268999
Q ss_pred HHHHHH--HHCCCEEEEECCCCCCCHH
Q ss_conf 899996--5148759986543332115
Q gi|254780709|r 185 AFKQAQ--AKKVDVLIIDTAGRLHNNS 209 (321)
Q Consensus 185 a~~~a~--~~~~DvvliDTAGR~~~~~ 209 (321)
.+...- ....=+|+.|=...+..+.
T Consensus 113 ~l~~~~~~~~~~~IvvLDEid~L~~~~ 139 (366)
T COG1474 113 RLYDNLSKKGKTVIVILDEVDALVDKD 139 (366)
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHCCC
T ss_conf 999977741875999976476541546
No 489
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.37 E-value=0.069 Score=33.54 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=47.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH-H------CCCCEEEEECCC-CCH--HHHHHHHHHHHHHCCCCCCCC-------
Q ss_conf 41231135444442478999999985-2------267426774345-124--568899999753035321223-------
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS-D------AGLKVMLAAGDT-FRS--AAIDQLKIWADRTSADFVCSE------- 173 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~-~------~g~kV~lva~Dt-fR~--aA~eQL~~~a~~~~v~~~~~~------- 173 (321)
-.++-++|+||+||||.+-=||-.+. . +|+ +.+++..+ |.+ -+.|-+...+..+|.+--...
T Consensus 50 GE~vGIIG~NGAGKSTLLKiIaGI~~PTsG~V~V~Gk-~sLL~lgaGf~~eLTGrENI~L~g~~lGlsk~eI~~~~deIi 128 (549)
T PRK13545 50 GEIVGIVGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS-AALIAISSGLNGQLTGIENIELKGLMMGITKEKIKEIIPEII 128 (549)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE-EEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9899998899998999999996898898608999468-987740557697762999999889984989999999899999
Q ss_pred -------CCCCCHH------HHHHHHHHHHHHCCCEEEEECCC
Q ss_conf -------5866124------54228999965148759986543
Q gi|254780709|r 174 -------IGSDAAA------LAYEAFKQAQAKKVDVLIIDTAG 203 (321)
Q Consensus 174 -------~~~dp~~------v~~~a~~~a~~~~~DvvliDTAG 203 (321)
.-..|.. .++-+..-|-..+-|++|||-|-
T Consensus 129 EFAELGdFid~PVKtYSSGMkaRLgFAIA~~~dPDILIIDEaL 171 (549)
T PRK13545 129 DFADIGKFMYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL 171 (549)
T ss_pred HHHCHHHHHHCHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9856788873826340886899999999982499999994620
No 490
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.37 E-value=0.053 Score=34.37 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=49.9
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHHCCC----CCCCC-CCCCCHHHHH-
Q ss_conf 412311354444424789999999852267426774345124568899-9997530353----21223-5866124542-
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL-KIWADRTSAD----FVCSE-IGSDAAALAY- 183 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL-~~~a~~~~v~----~~~~~-~~~dp~~v~~- 183 (321)
..-.++|-|+|+|||...++.++.++.. |++++ .|..-++|- +.+....+.+ .+.+. .+..|+.|.+
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~~~~~~---~Lvlv---~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~va 128 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIAELKRS---TLVLV---PTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVA 128 (442)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEEE---CCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCEEEE
T ss_conf 7867999679998899999999982698---89997---82999999999999734886766033687233577748999
Q ss_pred --HH------HHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf --28------999965148759986543332115
Q gi|254780709|r 184 --EA------FKQAQAKKVDVLIIDTAGRLHNNS 209 (321)
Q Consensus 184 --~a------~~~a~~~~~DvvliDTAGR~~~~~ 209 (321)
++ +..+..+.+++||+|=+-++..+.
T Consensus 129 t~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~ 162 (442)
T COG1061 129 TVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS 162 (442)
T ss_pred EEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 8389764155554035666759997524578477
No 491
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.36 E-value=0.051 Score=34.48 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=65.2
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHH
Q ss_conf 6674123113544444247899999998522674267743451245688999997530353212235866-124542289
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAF 186 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d-p~~v~~~a~ 186 (321)
..-|+-++|.||.|+||++.+-.+|.++.-+...- --+|..-+. =++-.-+..-++-++....+++ .+.-+++-+
T Consensus 20 ~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~-~~~Cg~C~s---C~l~~~g~HPD~~~i~~~~~k~I~vd~IR~l~ 95 (324)
T PRK06871 20 GRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGD-EQPCGQCHS---CHLFQAGNHPDFHILEPIDGKDIGVDQVREIN 95 (324)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCHH---HHHHHCCCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 99543787689999789999999999982899999-998888989---99997389998799846788878899999999
Q ss_pred HHH----HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 999----651487599865433321157789999899876302223430112310233522577899
Q gi|254780709|r 187 KQA----QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 (321)
Q Consensus 187 ~~a----~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a 249 (321)
+.+ ...++-|++||-|-||..... +.+=|..++.|..+++.+-+..-+.....+
T Consensus 96 ~~~~~~~~~g~~KV~iI~~ae~m~~~Aa---------NALLKtLEEPp~~~~fiL~t~~~~~ll~TI 153 (324)
T PRK06871 96 EKVSQFAQQGGNKVVYIQGAERLTEAAA---------NALLKTLEEPRPNTYFLLQADLSASLLATI 153 (324)
T ss_pred HHHHHCCCCCCCEEEEECCHHHHHHHHH---------HHHHHHHCCCCCCEEEEEEECCCCCCCCHH
T ss_conf 9986462205966999758888579999---------999998338987838999878701032408
No 492
>PRK06904 replicative DNA helicase; Validated
Probab=95.36 E-value=0.28 Score=29.27 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=65.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEE--------------------ECCCCCHHH------HHHHHHHHH
Q ss_conf 41231135444442478999999985-226742677--------------------434512456------889999975
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLA--------------------AGDTFRSAA------IDQLKIWAD 163 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~kV~lv--------------------a~DtfR~aA------~eQL~~~a~ 163 (321)
-..|.+.|-+|+|||+-+--+|.... ..++.|++. .....|-|. .+++...+.
T Consensus 221 g~LiViAaRPsmGKTa~alnia~n~A~~~~~~V~~fSLEM~~~~l~~R~ls~~s~v~~~~i~~g~~l~~~e~~~~~~~~~ 300 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVG 300 (472)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 75799973798756899999999999955995799778799999999999986499988864688560999999999999
Q ss_pred HH-CCC-CCCCC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCH---HHHHHHHHHHHHHHHCCCC
Q ss_conf 30-353-21223-5866124542289999651-4875998654333211---5778999989987630222
Q gi|254780709|r 164 RT-SAD-FVCSE-IGSDAAALAYEAFKQAQAK-KVDVLIIDTAGRLHNN---SILMAGIGKMIRVLKRLDP 227 (321)
Q Consensus 164 ~~-~v~-~~~~~-~~~dp~~v~~~a~~~a~~~-~~DvvliDTAGR~~~~---~~lm~EL~ki~~v~~~~~~ 227 (321)
.+ .-| +|-.. .+-.+..+.-.+-...+.+ +.|+|+||--+.+... .+.-.|+..|.+-+|....
T Consensus 301 ~l~~~~~l~idd~~~~t~~~i~~~~r~~~~~~~~l~~vvIDYLqL~~~~~~~~~r~~ei~~isr~LK~lAk 371 (472)
T PRK06904 301 MFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAK 371 (472)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98468981684699999999999999999873899789963886604888777788999999999999999
No 493
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.36 E-value=0.016 Score=38.03 Aligned_cols=122 Identities=19% Similarity=0.241 Sum_probs=69.5
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCCCC--------CCCCCHH
Q ss_conf 4123113544444247899999998522674267743--45124568899999753035321223--------5866124
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG--DTFRSAAIDQLKIWADRTSADFVCSE--------IGSDAAA 180 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~--DtfR~aA~eQL~~~a~~~~v~~~~~~--------~~~dp~~ 180 (321)
-.|....| +|=||||.+-=+|-+..-.|++|+++-- ..++.| |+.-. ...++++.... ...+...
T Consensus 23 Gli~VytG-~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~G--E~~~l--~~~~i~~~~~g~g~~~~~~~~e~d~~ 97 (190)
T PRK05986 23 GLLIVHTG-NGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTG--ERNLL--EGPGVEFHVMGTGFTWETQDRERDIA 97 (190)
T ss_pred CEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHH--HHHHH--CCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 67999806-998718899999999836998899999944885457--78874--37982899878998577897189999
Q ss_pred HHHHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 54228999965----1487599865433321157789999899876302223430112310233522577
Q gi|254780709|r 181 LAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 (321)
Q Consensus 181 v~~~a~~~a~~----~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~ 246 (321)
.+.+++++|+. ..||+|+.|-..- ..+..++++ .++...++ ..|..+-+|+ ||.++-
T Consensus 98 ~a~~~~~~a~~~l~~~~~dlvVLDEi~~-Al~~gll~~-eevi~~L~----~rp~~~evVL---TGR~~p 158 (190)
T PRK05986 98 AAREGWEEAKRMLADESYDLVVLDELTY-ALKYGYLDL-EEVLEALN----NRPGMQHVVI---TGRGAP 158 (190)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEHHHHHH-HHHCCCCCH-HHHHHHHH----HCCCCCEEEE---ECCCCC
T ss_conf 9999999999998588888895376799-985599589-99999998----2899876999---799999
No 494
>KOG0920 consensus
Probab=95.36 E-value=0.12 Score=32.00 Aligned_cols=133 Identities=22% Similarity=0.313 Sum_probs=80.7
Q ss_pred CCEEECCCCCCCCHHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----HCCCC-CCC---CCCCCCHH
Q ss_conf 41231135444442478999--9999852267426774345124568899999753----03532-122---35866124
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGK--LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----TSADF-VCS---EIGSDAAA 180 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aK--LA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~----~~v~~-~~~---~~~~dp~~ 180 (321)
-.|++++|=+|+||||-+-. |.+++.. |..+-++.+---|++|+.=-+-.+.. .|-.| |.. ...++-..
T Consensus 188 ~qVvvIsGeTGcGKtTQvpQfiLd~~~~~-~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~ 266 (924)
T KOG0920 188 NQVVVISGETGCGKTTQVPQFILDEAIES-GAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRSRETR 266 (924)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEE
T ss_conf 96699957889871224669999999862-89973886677517789999999887546668713689862013677516
Q ss_pred HHHHH-------HHH-HHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 54228-------999-965148759986543-332115778999989987630222343011231023352257789998
Q gi|254780709|r 181 LAYEA-------FKQ-AQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 (321)
Q Consensus 181 v~~~a-------~~~-a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~ 251 (321)
+.|-+ ++- ....++-.|++|..- |+.+..-|+-=++. ..+..|+..+..++||. | |+.
T Consensus 267 L~fcTtGvLLr~L~~~~~l~~~thiivDEVHER~i~~DflLi~lk~-------lL~~~p~LkvILMSAT~--d----ae~ 333 (924)
T KOG0920 267 LLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKD-------LLPRNPDLKVILMSATL--D----AEL 333 (924)
T ss_pred EEEECHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHH-------HHHHCCCCEEEEEEEEC--C----HHH
T ss_conf 8984068999875468621458665442279716775217999998-------86228885699862112--6----288
Q ss_pred HHHHCC
Q ss_conf 764358
Q gi|254780709|r 252 FHAVAG 257 (321)
Q Consensus 252 F~~~~~ 257 (321)
|+.|++
T Consensus 334 fs~YF~ 339 (924)
T KOG0920 334 FSDYFG 339 (924)
T ss_pred HHHHHC
T ss_conf 898718
No 495
>PRK09165 replicative DNA helicase; Provisional
Probab=95.34 E-value=0.29 Score=29.23 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=66.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH---------------HCCCCEEEEE--------------------CCCCCHHH-
Q ss_conf 41231135444442478999999985---------------2267426774--------------------34512456-
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS---------------DAGLKVMLAA--------------------GDTFRSAA- 154 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~---------------~~g~kV~lva--------------------~DtfR~aA- 154 (321)
-..|.+.|-+|+|||+-+--+|.... .+|+.|++.+ ...+|-|-
T Consensus 205 GdLiIIAARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs~~ql~~Rlls~~s~V~~~~ir~g~l 284 (484)
T PRK09165 205 SDLIILAGRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKI 284 (484)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 73799960799977899999999999874102222332113689848999477999999999999972686135544899
Q ss_pred ----HHHHHHHHHH-HCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----HHHHHHHHHHHHHHHH
Q ss_conf ----8899999753-0353212235-866124542289999651487599865433321-----1577899998998763
Q gi|254780709|r 155 ----IDQLKIWADR-TSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN-----NSILMAGIGKMIRVLK 223 (321)
Q Consensus 155 ----~eQL~~~a~~-~~v~~~~~~~-~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~-----~~~lm~EL~ki~~v~~ 223 (321)
.+++...+.+ .+.|+|-... +-.+..|.-.+-...+.++.|+|+||--+-++. ..|...|+..|.|-+|
T Consensus 285 ~~~e~~~i~~a~~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~gl~livIDYLqLi~~~~~~~~~~R~~ev~~Isr~LK 364 (484)
T PRK09165 285 SEEDFEKLVDASQELQKLPLYIDDTPALSISALRARARRLKRQHGLDLLVIDYLQLIRGSSKRSQDNRVQEISEITQGLK 364 (484)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999971984897799987999999999999860998899951763578888861219999999999999
Q ss_pred CCCC
Q ss_conf 0222
Q gi|254780709|r 224 RLDP 227 (321)
Q Consensus 224 ~~~~ 227 (321)
....
T Consensus 365 ~lAk 368 (484)
T PRK09165 365 ALAK 368 (484)
T ss_pred HHHH
T ss_conf 9999
No 496
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.11 Score=32.06 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=28.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 412311354444424789999999852267426774345
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt 149 (321)
-.++.++||+|+||||.+-=++-.++-..-+|.+-..|.
T Consensus 24 Ge~~~ilGpSGsGKSTLl~li~Gl~~p~sG~I~i~G~di 62 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV 62 (211)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEEC
T ss_conf 989999999995599999999769998852999999999
No 497
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.34 E-value=0.094 Score=32.60 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=59.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 123113544444247899999998522--674267743451245688999997530353212235866124542289999
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~--g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
+.+++-|..|.|||--+-=+|+++.++ +++|..++++.|---=+.-|+. . .++.+
T Consensus 146 NPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~v~al~~---------------~--------~~~~F 202 (447)
T PRK00149 146 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDFVKALRN---------------N--------AMEEF 202 (447)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHC---------------C--------CHHHH
T ss_conf 855897799887889999999999985899728995499999999999851---------------8--------69999
Q ss_pred --HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --651487599865433321157789999899876
Q gi|254780709|r 190 --QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 (321)
Q Consensus 190 --~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~ 222 (321)
+-+++|++|||--=-+..+...-+|+--+.+.+
T Consensus 203 r~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~l 237 (447)
T PRK00149 203 KEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNAL 237 (447)
T ss_pred HHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99997288543214888605577999999999999
No 498
>KOG2749 consensus
Probab=95.34 E-value=0.023 Score=36.90 Aligned_cols=169 Identities=22% Similarity=0.247 Sum_probs=94.1
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH-----HHH-----HHH--HHHHHHHCCCCCCCCCC
Q ss_conf 667412311354444424789999999852267426774345124-----568-----899--99975303532122358
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS-----AAI-----DQL--KIWADRTSADFVCSEIG 175 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~-----aA~-----eQL--~~~a~~~~v~~~~~~~~ 175 (321)
+..|. +|+|||+-+||||-+-=|-+|..+.|++++.+-.|.--. |++ +-+ -+||=.+.-|++.....
T Consensus 101 ~~GPr-v~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~FG~ 179 (415)
T KOG2749 101 SYGPR-VMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNFGL 179 (415)
T ss_pred CCCCE-EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCHHHEECCCCCCHHHCCCCCCCEEEECCC
T ss_conf 25977-99989876566789999999998717865389747999724425422202102324343176568852663268
Q ss_pred CCCH--HHHHHHHHH----HHHH--------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 6612--454228999----9651--------4875998654333211577899998998763022234301123102335
Q gi|254780709|r 176 SDAA--ALAYEAFKQ----AQAK--------KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 (321)
Q Consensus 176 ~dp~--~v~~~a~~~----a~~~--------~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~ 241 (321)
.-|. .-.|+++-. +-.+ ...=.+|||.|-.. .+.. +.+..+++++ ...+.+|++
T Consensus 180 ~sp~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i~-~egy----~~llhai~~f----~v~vviVLg--- 247 (415)
T KOG2749 180 TSPSTNLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCGWIE-GEGY----AALLHAIKAF----EVDVVIVLG--- 247 (415)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEECCCEEC-CCCH----HHHHHHHHHC----CCCEEEEEC---
T ss_conf 998768899999999999999987425811100554871263141-5558----9999999970----764899966---
Q ss_pred CHHHH--HHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 22577--8999876435897699965457-8706999999999769889997
Q gi|254780709|r 242 GQNAL--RQVEMFHAVAGTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 242 gq~~~--~~a~~F~~~~~~~g~I~TKlD~-ta~~G~~ls~~~~~~~Pi~fig 290 (321)
|.-+ +.-+.+...-++.-+-+.|.+| -+|-+-.-.-.....+-=+|.|
T Consensus 248 -~ErLy~~lkk~~~~~~~v~vv~lpKsgGv~~Rs~~~r~~~r~~~I~eYFYG 298 (415)
T KOG2749 248 -QERLYSSLKKDLPPKKNVRVVKLPKSGGVVARSKEVRRKLRGRSIREYFYG 298 (415)
T ss_pred -CHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCC
T ss_conf -478889987652655552489842778858504889998863118875136
No 499
>PRK08840 replicative DNA helicase; Provisional
Probab=95.33 E-value=0.25 Score=29.61 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=31.3
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECC
Q ss_conf 741231135444442478999999985-226742677434
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGD 148 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~kV~lva~D 148 (321)
+...|.+.|-+|+|||+-+--+|.... ++|+.|++.+..
T Consensus 216 ~G~LiviaaRPsmGKTalalnia~n~a~~~~~~v~~fSlE 255 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE 255 (464)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 5767999837987368999999999999659967997677
No 500
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.32 E-value=0.009 Score=39.75 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=33.8
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 741231135444442478999999985226742677434512456
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA 154 (321)
+-.++.++|+||+||||++.-++-..+...-+|.+-..|.-+..+
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCH
T ss_conf 898899989998888999999858987887069989835677997
Done!