HHsearch alignment for GI: 254780709 and conserved domain: pfam00142
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=98.61 E-value=9.7e-07 Score=67.61 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=88.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH------------HHHHHHHH-------------HHHCC
Q ss_conf 231135444442478999999985226742677434512456------------88999997-------------53035
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA------------IDQLKIWA-------------DRTSA 167 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA------------~eQL~~~a-------------~~~~v 167 (321)
T Consensus 2 ~iai~GKGGVGKTTtsvNLA~aLA~~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~~gv 81 (269)
T pfam00142 2 KIAIYGKGGIGKSTTSQNTSAALAEMGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGYGGI 81 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCCCCC
T ss_conf 58998999768899999999999987990999845899874144438988884787760467702240745013377872
Q ss_pred CCCCCCCCCCC----H-HHHHHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 32122358661----2-454228999965----14875998654333211577899998998763022234301123102
Q gi|254780709|r 168 DFVCSEIGSDA----A-ALAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 (321)
Q Consensus 168 ~~~~~~~~~dp----~-~v~~~a~~~a~~----~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVld 238 (321)
T Consensus 82 ~~i~~~-~~e~~~~~~~~~~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~~~~----i~-------~~~A~~viiv~t 149 (269)
T pfam00142 82 RCVESG-GPEPGVGCAGRGVITAIDLLEELGAYDDLDFVLYDVLGDVVCGGFAMP----IR-------EGKAQEVYIVTS 149 (269)
T ss_pred EEEECC-CCCCCCCCCHHHHHHHHHHHHHHCCHHCCCEEEEECCCCEEECCCCCC----HH-------HCCCCEEEEEEC
T ss_conf 688689-986563211078999999999821021288898533674024340053----34-------435887999828
Q ss_pred CCC--CHHHHH---HHHHHHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 335--225778---99987643--58976999654578706999999999769889997
Q gi|254780709|r 239 ATT--GQNALR---QVEMFHAV--AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 239 a~~--gq~~~~---~a~~F~~~--~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig 290 (321)
T Consensus 150 ~E~~al~~a~~l~~~i~~~~~~~~~~i~giv~n~~~~~~~~~~~~~~~~~~~~~--~lg 206 (269)
T pfam00142 150 GEMMALYAANNICKGILKYAKSGGVRLGGLICNSRKVDDERELIDAFAEALGTQ--MIH 206 (269)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC--EEE
T ss_conf 947899999999999999850579627899826865411579999999981994--799