HHsearch alignment for GI: 254780709 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.43 E-value=0.0025 Score=43.65 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=64.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321---223586612454228999
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---CSEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~---~~~~~~dp~~v~~~a~~~ 188 (321)
T Consensus 53 Ri~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E--~a~d----~~~a~~lGVD~~~l~~~qp--d~~Eqal~i~~~ 124 (322)
T pfam00154 53 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE--HALD----PVYAKKLGVDIDNLLVSQP--DTGEQALEIADM 124 (322)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH--HHCC----HHHHHHCCCCHHHEEEECC--CHHHHHHHHHHH
T ss_conf 0899988987778999999999997349938998536--6059----8899980988025389778--839999999999
Q ss_pred HHH-HCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 965-14875998654333211577899
Q gi|254780709|r 189 AQA-KKVDVLIIDTAGRLHNNSILMAG 214 (321)
Q Consensus 189 a~~-~~~DvvliDTAGR~~~~~~lm~E 214 (321)
T Consensus 125 li~~~~~~liViDSvaal~p~~E~e~~ 151 (322)
T pfam00154 125 LVRSGAVDLIVVDSVAALVPKAEIEGE 151 (322)
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 853799765998253456768887524