HHsearch alignment for GI: 254780709 and conserved domain: pfam00265
>pfam00265 TK Thymidine kinase.
Probab=95.56 E-value=0.046 Score=34.79 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=49.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2311354444424789999999852267426774--34512456889999975303532122358661245422899996
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA--GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva--~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
T Consensus 3 L~~i~GpMfsGKTteLi~~~~~~~~~gkkvl~i~p~~D~-R~~~-~~i~---Sh~g~~~~~~~~~~~---~~-~~~~~~~ 73 (175)
T pfam00265 3 IELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAIDN-RYGT-GKVV---THDGISMEAKLIKTS---LL-DDIKDII 73 (175)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCC-CEEE---CCCCCCCCCEECCCC---HH-HHHHHHH
T ss_conf 999992517789999999999999879939999461127-7899-9698---899981145673653---19-9999864
Q ss_pred HHCCCEEEEECCC
Q ss_conf 5148759986543
Q gi|254780709|r 191 AKKVDVLIIDTAG 203 (321)
Q Consensus 191 ~~~~DvvliDTAG 203 (321)
T Consensus 74 ~~~~dvI~IDEaQ 86 (175)
T pfam00265 74 SNTIHVVGIDEAQ 86 (175)
T ss_pred CCCCCEEEEEHHH
T ss_conf 3687899983377