HHsearch alignment for GI: 254780709 and conserved domain: pfam01656
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=98.67 E-value=9.8e-07 Score=67.57 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=84.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH----------------------HHHH-------HC
Q ss_conf 135444442478999999985226742677434512456889999----------------------9753-------03
Q gi|254780709|r 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI----------------------WADR-------TS 166 (321)
Q Consensus 116 ~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~----------------------~a~~-------~~ 166 (321)
T Consensus 4 ~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (212)
T pfam01656 4 AGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTS-SLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNLDP 82 (212)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCCCC
T ss_conf 7689980699999999999997899789983899996258-865876434444441010112100245642224555587
Q ss_pred CCCCCCCC---CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-
Q ss_conf 53212235---86612454228999965148759986543332115778999989987630222343011231023352-
Q gi|254780709|r 167 ADFVCSEI---GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG- 242 (321)
Q Consensus 167 v~~~~~~~---~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g- 242 (321)
T Consensus 83 l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~--~~~~al-------~-----~ad~vivv~~p~~~s 148 (212)
T pfam01656 83 LLLIPSNLSLANFESELILEGGEEGLIKLAYDYVIIDGAPGLGE--LTANAL-------V-----AADILVVPIEPEGVA 148 (212)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH--HHHHHH-------H-----CCCEEEEEECCCHHH
T ss_conf 46533501566777777999999876660499899947997559--999999-------8-----399899994897699
Q ss_pred -HHHHHHHHHHHHH-CCCCEEEEECCCCCCCHH---HHHHHHHHHCCCEE
Q ss_conf -2577899987643-589769996545787069---99999999769889
Q gi|254780709|r 243 -QNALRQVEMFHAV-AGTTGLIMTKMDGTARGG---GLIPIVVTHKIPVY 287 (321)
Q Consensus 243 -q~~~~~a~~F~~~-~~~~g~I~TKlD~ta~~G---~~ls~~~~~~~Pi~ 287 (321)
T Consensus 149 l~~~~~l~~~~~~l~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (212)
T pfam01656 149 VLGAQRLLELVERLGLKILGVVLNKVDRGDERHLDKEIEALERKTGIPVL 198 (212)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999985996229999148899836630789999999789975