HHsearch alignment for GI: 254780709 and conserved domain: pfam03215

>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.15  E-value=0.01  Score=39.43  Aligned_cols=107  Identities=17%  Similarity=0.207  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHH---CCCCEE--------------EEEC
Q ss_conf             99999987852010012100013667412311354444424789999999852---267426--------------7743
Q gi|254780709|r   85 LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVM--------------LAAG  147 (321)
Q Consensus        85 ~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~---~g~kV~--------------lva~  147 (321)
T Consensus        28 V~eV~~WL~~~~~~---------~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~~q~~d~~g~~   98 (490)
T pfam03215        28 IAEVDHWLKAVFLE---------SNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNECQKPDFRGDC   98 (490)
T ss_pred             HHHHHHHHHHHHCC---------CCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCCCCCCC
T ss_conf             99999999998547---------777318998798998899999999997596899814865456775022101212345


Q ss_pred             CCCCHHHHHHHHHHHH---HHC-------------CCCCCCCCCCCCHHHHHHHHHHHHH-HC-CCEEEEEC
Q ss_conf             4512456889999975---303-------------5321223586612454228999965-14-87599865
Q gi|254780709|r  148 DTFRSAAIDQLKIWAD---RTS-------------ADFVCSEIGSDAAALAYEAFKQAQA-KK-VDVLIIDT  201 (321)
Q Consensus       148 DtfR~aA~eQL~~~a~---~~~-------------v~~~~~~~~~dp~~v~~~a~~~a~~-~~-~DvvliDT  201 (321)
T Consensus        99 ~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~-fr~~L~~~L~s~~~~PlV~IiS  169 (490)
T pfam03215        99 IVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEK-FREVIREVLQSIWHLPLIFCLT  169 (490)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHH-HHHHHHHHHHHCCCCCEEEEEE
T ss_conf             7666637777678876223356544578873599996588744236699-9999999997089998799997