HHsearch alignment for GI: 254780709 and conserved domain: pfam03215
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.15 E-value=0.01 Score=39.43 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHH---CCCCEE--------------EEEC
Q ss_conf 99999987852010012100013667412311354444424789999999852---267426--------------7743
Q gi|254780709|r 85 LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVM--------------LAAG 147 (321)
Q Consensus 85 ~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~---~g~kV~--------------lva~ 147 (321)
T Consensus 28 V~eV~~WL~~~~~~---------~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~~q~~d~~g~~ 98 (490)
T pfam03215 28 IAEVDHWLKAVFLE---------SNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNECQKPDFRGDC 98 (490)
T ss_pred HHHHHHHHHHHHCC---------CCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCCCCCCC
T ss_conf 99999999998547---------777318998798998899999999997596899814865456775022101212345
Q ss_pred CCCCHHHHHHHHHHHH---HHC-------------CCCCCCCCCCCCHHHHHHHHHHHHH-HC-CCEEEEEC
Q ss_conf 4512456889999975---303-------------5321223586612454228999965-14-87599865
Q gi|254780709|r 148 DTFRSAAIDQLKIWAD---RTS-------------ADFVCSEIGSDAAALAYEAFKQAQA-KK-VDVLIIDT 201 (321)
Q Consensus 148 DtfR~aA~eQL~~~a~---~~~-------------v~~~~~~~~~dp~~v~~~a~~~a~~-~~-~DvvliDT 201 (321)
T Consensus 99 ~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~-fr~~L~~~L~s~~~~PlV~IiS 169 (490)
T pfam03215 99 IVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEK-FREVIREVLQSIWHLPLIFCLT 169 (490)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHH-HHHHHHHHHHHCCCCCEEEEEE
T ss_conf 7666637777678876223356544578873599996588744236699-9999999997089998799997