HHsearch alignment for GI: 254780709 and conserved domain: pfam06564
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=98.18 E-value=3.6e-05 Score=56.64 Aligned_cols=149 Identities=13% Similarity=0.171 Sum_probs=77.7
Q ss_pred EEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH------HHHHHHHHHH---------------HHCCCCC
Q ss_conf 23113-544444247899999998522674267743451245------6889999975---------------3035321
Q gi|254780709|r 113 VILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA------AIDQLKIWAD---------------RTSADFV 170 (321)
Q Consensus 113 vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~a------A~eQL~~~a~---------------~~~v~~~ 170 (321)
T Consensus 3 iIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~~l~~~~g~~~~~~~g~~~~~l~~~~~~~~~~~~~~gl~ll 82 (244)
T pfam06564 3 VLALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASPDNLLRLHFNVDFDHSDGWARAELDGRPWRDAALRYTPGLDLL 82 (244)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHEEECCCEEEE
T ss_conf 99996699986199999999999997799589996898742102358886434414899875997777444526975897
Q ss_pred CCCCCCCC-HHH------------HHHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 22358661-245------------422899996-5148759986543332115778999989987630222343011231
Q gi|254780709|r 171 CSEIGSDA-AAL------------AYEAFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 (321)
Q Consensus 171 ~~~~~~dp-~~v------------~~~a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lV 236 (321)
T Consensus 83 P--~g~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l~--~l~~~al------------~aad~vLv~ 146 (244)
T pfam06564 83 P--FGQLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGFS--PLTRQLL------------ELADVTLAV 146 (244)
T ss_pred E--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH--HHHHHHH------------HHCCCEEEE
T ss_conf 2--89974789998986544379999987642135789999997999968--9999999------------976960899
Q ss_pred CCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHH-HHHHHH
Q ss_conf 023352257789998764-358976999654578706999-999999
Q gi|254780709|r 237 LDATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTARGGGL-IPIVVT 281 (321)
Q Consensus 237 lda~~gq~~~~~a~~F~~-~~~~~g~I~TKlD~ta~~G~~-ls~~~~ 281 (321)
T Consensus 147 v~~d~----~s~~~l~~~~~~~~~~ilvn~~d~~~~l~~d~~~~~~~ 189 (244)
T pfam06564 147 VHADA----NCHIRLHQQALPAGCHLLINDFRIGSQLQDDLYQLWLQ 189 (244)
T ss_pred ECCCH----HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 68885----89999732334467748864245576899999999998