HHsearch alignment for GI: 254780709 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.91 E-value=0.00052 Score=48.45 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7412311354444424789999999-85226742677434512456889999975303532
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~-~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~ 169 (321)
T Consensus 18 ~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~----~~~l~~~~~~~g~~~ 74 (231)
T pfam06745 18 EGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEP----PEDLRENAKSFGWDL 74 (231)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----HHHHHHHHHHCCCCH
T ss_conf 996999985897259999999999999865896899981379----999999999829985