HHsearch alignment for GI: 254780709 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.

Probab=96.26  E-value=0.018  Score=37.68  Aligned_cols=86  Identities=17%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf             1231135444442478999999985226742677434512456889999975303532-122358661245422899996
Q gi|254780709|r  112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQ  190 (321)
Q Consensus       112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~~~~dp~~v~~~a~~~a~  190 (321)
T Consensus         4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~-----~~~v~~l~g~~~gyvg---~~~~G~l~~~v---~   72 (168)
T pfam07724         4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYME-----EHSVSRLIGAPPGYVG---YEEGGQLTEAV---R   72 (168)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC-----HHHHHHHCCCCCCCCC---CCCCCCHHHHH---H
T ss_conf             79998898998999999999999679853448855756542-----5699987058998726---24265078999---8


Q ss_pred             HHCCCEEEEECCCCCCCH
Q ss_conf             514875998654333211
Q gi|254780709|r  191 AKKVDVLIIDTAGRLHNN  208 (321)
Q Consensus       191 ~~~~DvvliDTAGR~~~~  208 (321)
T Consensus        73 ~~p~~VillDEIeKa~~~   90 (168)
T pfam07724        73 RKPYSIVLIDEIEKAHPG   90 (168)
T ss_pred             HCCCCEEEEHHHHHHCHH
T ss_conf             389848986577665899